Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004721

Physical Location & Seq

Genomic Coordinates Forward (+)

16943369 .. 16943848

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0122400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTGTCTCTACCTTCTCCCAAACATTTCTTCATCCCTCCTCATAACCTTGACCATATTCTTATTTCATGTTCCATACTCTCTGAGCGTTGATGATGAGCGGTACCTCAATTGCAGCCAATCGTTTGAATGCTCCAATCTTGAGAGCGTCGGTTACCCTTTCTGGGGATCAAACCGGCCCGACTACTGTGGCTTCCCTGAGTTCAAGTTGAATTGCAGCGGTGACGCCCCGTCCATCTTGATCCATGAACAAGAATTTCGAGTCCTTTCTATCAATCAGAGTCAAAGTAGATTCACAGTTGCCAGAGCCGATTACTGGAACACCGTTTGTCCGGTGCCCCTTACCAATACCACCACCATAGATAATTCATCATCCCGTGTTCTTGAATTTGCTTCAGATGTTCAACAACTCTTGCTCTTCTATGCATGCCCCTCACTTAATATTCCTCTCCCACTTCAGCTTACTAGCCAACTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000723 GO:0000726 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010212 GO:0010332 GO:0010833 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031323 GO:0031347 GO:0032200 GO:0032204 GO:0032501 GO:0032504 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043247 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051276 GO:0051321 GO:0051716 GO:0055044 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03460 ko04110 ko04115 ko04214 ko04218 ko05165 ko05166 map03460 map04110 map04115 map04214 map04218 map05165 map05166

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase UME

Protein Analysis

159

Amino Acids

17.99

Weight (kDa)

4.52

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	38 - 102	3.2e-16	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40820 AT5G40820 AT5G40820 AT5G40820
fragaria_vesca	FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770
malus_domestica	MD05G1126600.v1.1
prunus_persica	Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1
pyrus_communis	pycom05g12250 pycom10g11100 pycom10g11110
rosa_chinensis	RchiOBHm_Chr6g0279121
rosa_laevigata	RLG00000013166
rosa_multiflora	Rmu_sc0014203.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189110
rosa_rugosa	Rorug06G0122400
rosa_samantha	Rh6AG231100 Rh6BG236000 Rh6CG238100 Rh6DG229700
rosa_wichuraiana	Rw6G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	102
AccB1I	GGYRCC	2 cut(s)	102, 334
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	2 cut(s)	100, 219
AclWI	GGATC	2 cut(s)	175, 235
AcsI	RAATTY	2 cut(s)	254, 386
AcuI	CTGAAG	2 cut(s)	378, 440
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	163, 164, 315
AgsI	TTSAA	5 cut(s)	128, 205, 211, 386, 404
AhdI	GACNNNNNGTC	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	1 cut(s)	460
AluI	AGCT	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	175, 235
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	114, 216
ApoI	RAATTY	2 cut(s)	254, 386
Asp718I	GGTACC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	339
BanI	GGYRCC	2 cut(s)	102, 334
BbvI	GCAGC	2 cut(s)	126, 228
BccI	CCATC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	2 cut(s)	115, 217
BlsI	GCNGC	2 cut(s)	116, 218
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	104, 336
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 164, 315
Bse118I	RCCGGY	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	320
BseGI	GGATG	2 cut(s)	32, 371
BseLI	CCNNNNNNNGG	3 cut(s)	163, 164, 315
BseMII	CTCAG	2 cut(s)	74, 189
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	126, 228
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	2 cut(s)	102, 334
BsiSI	CCGG	2 cut(s)	175, 332
BslI	CCNNNNNNNGG	3 cut(s)	163, 164, 315
BsmAI	GTCTC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	167, 240
BspACI	CCGC	2 cut(s)	100, 219
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	75, 190
BspLI	GGNNCC	2 cut(s)	104, 336
BspPI	GGATC	2 cut(s)	175, 235
BspQI	GCTCTTC	1 cut(s)	422
BspT107I	GGYRCC	2 cut(s)	102, 334
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	174
BssMI	GATC	2 cut(s)	167, 240
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	188, 298, 325
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	83, 198
BstEII	GGTNACC	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	32, 371
BstKTI	GATC	2 cut(s)	170, 243
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	167, 240
BstNSI	RCATGY	1 cut(s)	429
BstPI	GGTNACC	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	126, 228
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	32, 371
Cac8I	GCNNGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	177
CseI	GACGC	2 cut(s)	136, 233
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	68, 245, 426
CviJI	RGCY	6 cut(s)	117, 178, 192, 308, 460, 468
CviKI_1	RGCY	6 cut(s)	117, 178, 192, 308, 460, 468
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	83, 198
DpnI	GATC	2 cut(s)	169, 242
DpnII	GATC	2 cut(s)	167, 240
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	422
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	378, 440
Eco91I	GGTNACC	1 cut(s)	152
EcoO65I	GGTNACC	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	3 cut(s)	71, 248, 429
FaiI	YATR	8 cut(s)	44, 56, 69, 76, 246, 359, 423, 427
FatI	CATG	3 cut(s)	67, 244, 425
Fnu4HI	GCNGC	2 cut(s)	115, 217
FokI	GGATG	2 cut(s)	19, 358
Fsp4HI	GCNGC	2 cut(s)	115, 217
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	2 cut(s)	115, 217
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	175, 332
HgaI	GACGC	2 cut(s)	136, 233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	71, 248, 429
HinfI	GANTC	3 cut(s)	261, 280, 291
HpaII	CCGG	2 cut(s)	175, 332
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	3 cut(s)	84, 279, 397
Hpy188III	TCNNGA	3 cut(s)	140, 238, 383
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	3 cut(s)	188, 298, 325
HpyCH4V	TGCA	4 cut(s)	114, 216, 425, 475
HpyF3I	CTNAG	2 cut(s)	83, 198
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	71, 248, 429
KpnI	GGTACC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	167, 240
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	6 cut(s)	148, 188, 210, 301, 316, 345
Lsp1109I	GCAGC	2 cut(s)	126, 228
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	152, 221
MalI	GATC	2 cut(s)	169, 242
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	2 cut(s)	167, 240
MboII	GAAGA	2 cut(s)	21, 409
MfeI	CAATTG	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	5 cut(s)	109, 211, 254, 364, 386
MlyI	GAGTC	2 cut(s)	270, 289
MnlI	CCTC	5 cut(s)	47, 50, 116, 442, 456
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	2 cut(s)	175, 332
MunI	CAATTG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	167, 240
NlaIII	CATG	3 cut(s)	71, 248, 429
NlaIV	GGNNCC	2 cut(s)	104, 336
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	429
PaeI	GCATGC	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	422
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	116, 218
PleI	GAGTC	2 cut(s)	269, 288
PpsI	GAGTC	2 cut(s)	269, 288
PspEI	GGTNACC	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	104, 336
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	422
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	115, 217
Sau3AI	GATC	2 cut(s)	167, 240
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	2 cut(s)	270, 289
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	4 cut(s)	15, 50, 108, 462
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	5 cut(s)	109, 211, 254, 364, 386
SsiI	CCGC	2 cut(s)	100, 219
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	188, 298, 325
TaqI	TCGA	1 cut(s)	259
TasI	AATT	5 cut(s)	109, 211, 254, 364, 386
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	114, 216
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	21, 56, 261, 357
XapI	RAATTY	2 cut(s)	254, 386
XceI	RCATGY	1 cut(s)	429
XspI	CTAG	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.