Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004721

Physical Location & Seq

Genomic Coordinates Reverse (-)

44229494 .. 44243987

Gene Structure 14494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG236000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 8160 bp

ATGGCCAACCTGAGTAGCCTACTCCACGAGCTCCGAGAACGCATAGCAGCCGCCTCATCCACTCCTCCTAACAACTCACACGACGTCGCTTTGGAGATCCGATTCCGCGCCGTCCTTCCCAACCTTCTTCAAGCTCACGTCGTCCCCTCTCCCTCCGCGAATGAGAGAGAAGTGATAGCTATATTGAGGTTCATCGGTTACACGGCGAAGCATTTTCCCGGAGTCTTTTACCATGGCAAGGCTGCCGCGATTCTTCCTATGATCGGTCGTATTCTGCCTTTCTTTGCAGAGCCGGCGTTCCGTTCTAGGCATGGAGTGATATTTGATACGCTTGGATCGCTTTTAACCTTACTTCGTAGTGGAGCTCAGGATGCATATCGTCAGTTTTTTGTAGATTCCATGCTCGTTGTTCAAGATCTTTTGTGTGTCGCATCAGTCTCTGCAGACATATCAAGTTTTACAGAATCAACTAGAGTGACTTTAAAGTGTTTCTGCGAGTCCTTCAATGCAATTTTTGATGATCCTTCACATCTTGGTGATCTCCCACATAGTATCAAACCTGTTGATGGCACTGGGATCTTGATTAACCTTACAGGAAAAGCAAGGTGGCAACCTTTCGCAACTTGGATGATTAAGCTTCTTGGAAAATGCTTAACTGAAGGAACTCTATATGTGGATGGACTCATCAATATGCCATTTGTTATGGCTGCATGGTCCCTTTTTTGTTATGGGGATGGTGATTTGCACATGGCATTTTTTGAATTTGCACGCATCGTTGGATCTGCGATAAAATGTGACGTCATTCCTTATCATAACATAGTCCAGTCGATATCATCTATATTAAGCGAGGACAAAGAGGGGACTCCTGCATTTAGAAACACGGTTTATGATTCGTCCATGGGTGGTTGCCTAGAGGCATTGCACTCTAATTGCCCTGAGGGTGTAGTCAAGCTAACAGCTGCACATTTTGTCAATGTATTTCCTCATTCAATGAGGAGAACCCGAAGCCAGGAGCTTAAGGTTGCATTGTGCAACACATACATACGGATTGCGAAGATTTGCCCCCCTCATATCTGGAGGCCAGAAATTCTCCTATATGTACTTTCATGTCCAGATCCCTGCTTTTCATTGATAGATTGCTTACATGTAGCTCTCTCTATACTTGGTCCTGATCTTGTTGGAGGAAGAATTACAGATAATTCCTGCCAGAGTTTATCCACATTAAGTGATAAATCAATTGAAAACTCACAGGTTGGAGAAAAAAGACCTATTGAGGATGTGGATTCTTTCAACACTAAACGCCAAAAGGTTGATGAAAAAATCATCAATCCTGATTCTAATATTCAGTTGGAATGGCAGTCTGCTCATATAGTTCCTTGTGAGACAGAAGACTATGCAAATCAGATGCATAAATCACTCCTTTCTTTTGCTGAATGTTTAAAATCTCCTGGTGTCTGTCCTAATTCCTTAAGACCTGATCTCGCGTTAATGGCTCTTAGCATTCTTTGCATTGCGTTCTGTAGATATCCTGAGACCAATCTGTCACTATGCATCTTTCATCAGATGTATACATGGATACCTTGGATATGCCAACAGGCAAAGGAAGGAAGTACAGTTGAACTTGATATTTCTGTCTACCTGGAAGGAATTCACTGTATGTTGCGGTTGCAAAATTGCTTAATCATGAAGTGTATGGACAGTACGCTTGTCGATGCTGATCTTATACATGTCCTTCTAAAGCTTCCATGGACCCATTCTCATGTAGTTACTGACTGCCATCAATTGTGGAAAACAAAATGCATCTCAGTTCAAGTTGCATGCAAACTTGGTCATAGCACAAGAATTGAAACTCAACTTGAAGTATTGGATTTGAGTCTCAATGATGAATGTGACGAAGTTATAATTGAAGCTATAACTTCTATGCCCGTGATTGTCATGTGGTCTGGCCTCAGTGGACTTTCTCACATATTCAGAAGGCTTGAGCTCTTGGGGCGACAGAGAAGTGAGAAGGTTAAGAATATCATTCCCTTTTCTCTTGGTTTTTTGTCATGTCTTTACGGATCTCATAGCAATGGAGATGACATAAATAGAAGTCAGTGTAAACTATTTTTAAAAATGAAAAGTGAGAGACAAAGTCAAACAGTGGATTATTTACTGCAAGGATTCTGGTGTTCAAAGTGTGACCGAAGTGTTCAACACAATACTGAGTCATATTCAAATATCATAAATCTACCTGACAAGCCCAGAGAATTGGACTGTAATTTTCTCCATCTTCAGTCTATATATTTTCAGCTTCTTAATGATGAGTCATCTGAAGAGATTCAAGTGGCTTGTGTGAAAAATATCCGCCGAGTTCTTGTACATGGGGGCATAGAGAATCTGTTGGAGTCAAGATTTGAATGGATTAAATGTGTTAAATATCTACTCATTAATACCAAGAAGGCTATAAGAGAAGCATTCTGCACTCAGATTAGTTCATTCGTTGAGGATTCAATTTTGAGTTGCTTATTTCCTGATGAGAGCATGTCAAGTAATGGTAGAGAAGAAGGGTTTTTGAACATAATCAACAGCTCCTTTTCAGAAACTGAAGACCTCCAAATCATTGAGACTCTTTTGGAATCAACAGCTGAAATAATGATTGCAGTTGATATTCAGAGTCAATTATTCTTGTTTTCTCTTCTTTTGTTGGTTAGTCAACTTGATAATCCACACATGACAGTGAGAATGATTGCAGCGAAGTTGATACACAAAGCTTGCTGTTTTCATCTTAAAGGAGGTTTCCAAGTAATCCTTCTGAAAGTGGTTCATGTTCGAAATGAGCTATTTGACTATCTGTCTTCGAGCCTCTCTAGCCGTCCGACTATGGTCCAAGAGTTTGCAGAATCAGTTCTTGGTATTGAAATAGAAGAACTTGTCAAGAAAATGGTTCCCGTAGTTCTTCCGAAGCTTGTAGTGTCTCAGCAGGATGATGATCAAGCAGTTGACACCTTATATGAACTGGCCAAGTGGTTAAACACCGATGTTGCAGGTCTTATAGTTCTATGGGTGCCAAAAGTGCTAGCTTTTGCTCTCCATCAACCAGATGTGCGAGAATTAGATGCTGCTGTACAGTTTTACCATACACAAATCAGTTCTAACAAAAGAGAAATCTTTGCTGCTGCATTAAATAATCTTTTAGATGAACTCATATGCTTTCTGGATGGAGGTGATTCAGATGAGATAAGCGGAAGGTTAGCAAGAGTACCTGAGACGATAAAAGAGGTTGCTAGAGTTTTGGATGAAGGTGAAGATCTACCAAACTTTTTGAGGAATCATTTTGCCCACCTTCTTAACAGTATCGATAGAAAGATGCTCCATGCAGAAGAATTTTCATTGCAGAAACAAGCCTTGCAACGAATTGAGATGCTAATTAAAATGATGGGTCGTCATCTTAGTACTTATGTGCCTAAACTAATGGTTCTTCTCATGCATGCTATTGATAAAGACATCCTCCAGAGTGAGGGTCTCTCAGTGTTGCATTTTTTCATTGTGCAGCTGGTGAAAGTATCACCGGCTAGCACTAAACATATAATTTCACAAGTTTTTGCTGCCCTTATTCCCTTTCTTGAGAGAGATGAAGAAAGTCCAGTACATCTGGATAAAGTGGTAAAAATTTTAGAAGAACTTGTGCTAAATAACAGGGATATTCTAAAGCAGCATATTCGTGAGTTCCCTCCATTGCCCAGTATTCCAGCCTTAATAAAAGTGAACAAGGCTATACAAGAAGCCAGAGGGTCAATGACTTTGAGGGATCGATTGCGGGATGTTGTTGATGGTCTGAATCATGACAGCTTAAATGTGAGATACATGGTTGTGTGTGAGTTGAAAAAGTTGCTGAACCTGGAACGGGAAGGGGTTACATCTCTAATAACTGCTGAAGGTGGTGCGGATATGGAAATTTTGAGCTCTTTAATCAGATCTCTACTTAAAGGATGTGCTGAAGAATCAAGGAGAGCAGTTGGACAGCGGCTAAAGTTGGTGTGTGCTGACTGCCTTGGGGCCCTGGGTGCAGTTGACCCTGCTAAAGTGAAGGCCTTTTCATGCCAACGCTTTAAAATTGAATGCTCTGATGATGACCTTATCTATGAGTTGATTCAAAAGCAACTTGCACGGGCCTTTAGAGCTGCACCTGACACTATAATTCAAGATTCAGCTGTAGTGGCCATACAGGAACTGCTAAAGATTGCTGGTTGTGAGGCCTCATTACATGAGAATGCTGCTGCTTCTATGTTGGCTCCAAAGGACAAAGAGCCTCTGGCTTCTGGAATGATGACTACTGATGGTACAAATGAGATGACTAGAAGGGGTCAGAGATTATGGGACCGGTTCTCCAATTATGTGAAAGAAATAATTGCCCCTTATTTGTCCTCTAGATTTCAACTTCCTAATGTTGCTGATCCTGTATTTGTTGGCCCAATTTACCGTCCATCTATGTCATTCAGAAGATGGATATTCTTCTGGATAAGAAAGCTGACTGCACATGCTACTGGTTCTCGTGCAAGAATTTTCAATGCTTGTCGAGGTATAGTGCGCCAGGATATGCAAACAGCAATTTATCTGCTTCCATATTTAGTTCTTAATGCTGTCTGTCATGGCACAGAGGAGGCACGCTATGGCATAACAGAAGAAATCCTATATGTTCTTGATGTTGCTGCATCTCATAACAGTGAGGATGCAGTGCATGGTGTCAATGGTCGGAAAAATGAAGTTTGTGTTCAAGCTGTGTTCATTCTCCTTGATAATCTTGGTCAATGGGTGGATGACGTTAGACAAGAACTATTCCGTTCTTTTCAATTATTAGCTTCTAAGCAACAAATATCCAAGACCAGGCATCAAACTCAGAATACTACCAATCAGGACCAACTTCGTCTACAGTGTGAACATGTTTCAAAACTCTTGTCTGCAGTTCCAAAGGAGACCCTTGCCAGGGCCTCCTTCAGGTGTCAGGCTTATGCAAGATCCTTCATGTATTTTGAGTTGTACGTGAGGGGAAAGTCAGGTTCTTTCAACCCTGCATCTGAGCGAAGTGGTTCATTTGATGATGCAGATGTTTCATATCTGATGGAAATATACAGCTGCCTGGATGAGCCTGATGGTCTTTCTGGATTTGCATTTTTACGTAAATCTTTGGAATTACAAGACCAGCTCTTGATAAACAAAAAAGCCGGGAACTGGGCAGAGGTTTTAACTTCTTGTGAACAAGCTTTGCAGATGGAACCAACATCAGTTCAAAAGCAGTCTGATGTGCTTAACTGTTTATTAAACATGTGTCACCTTCAGGCTATGGTGACTCATGTGGATGGTTTAATGTGTAGGATTCCCCAATACAAGAAAACATGGTGCATGCAAGGTGTGCAGGCAGCATGGAGACTTGGCAGGTGGGATTTGATGGATGAGTACCTTAGTGGAGCTGATCAAGAAGGTTTACTTTGTAGCAGTTCTGAAAGTAATGCGTCATTTGATATGGATGTTGCAAAAATTCTGCAGGCAATGATGAAGAAGGATCAGTTCTCAGTTGAAGAAAAAATTGCCCTCTCCAAGCAAGCTCTAATTGCTCCCCTTTCTGCTGCAGGCATGGATTCTTATGTGCGGGCTTACCCATTTGTAGTGAAACTTCACCTGCTACGAGAGCTTGAGGATTTTTATACTCTTCTTGGTGATGCTTCTTTCTTGGAGAAATCGTTTGCATTTGATGATCCTAAATTCTCAAAAGTGAGGGAGAACTGGGAAAACCGTCTCAGATTTACTCAGCCATCACTCTGGGCAAGAGAGCCACTTTTGGCTTTCCGAAGATTGGTTTTTGCTAACAGTGGTCTTGAGGCTCAAGTTGGGAACTGCTGGCTTCAATATGCAAAGCTCTGTCGCATGGCTGGTCATTATGAGACAGCAAATCAGGCTATTCTGGAAGCCCAAGCTACCAATGCACCTAACGTTCACATGGAGAAGGCTAAACTTCTCTGGAGCACCAGGCGATCTGATGGTGCAATTGCACAGTTGCAACAGTGTCTCTTGAACATGCCTGAAGGGATTGTAGGCTCCAATGCAATTGCATCAATTACCAGTCTTTCACTGGTTCCGCCAAACCTGCCCCCTTTAGTTAATAATACTCAAGCTTGGAATGAAAATCGAGATATTGCAAAGACACTTCTCCTCTATTCTAGGTGGATCCATTACACTGGGCAGAAACAGAAAGAAGATGTCATAAGTCTATATAGCAGGGTGAGGGAACTGCAGCCCAAGTGGGAGAAAGGATATTTTTACATGGCTAAATATTATGAGGAAGTACTAGCTGATGCCAGGAAGCGTCAGGAAGAAAATCTTGAACTGGGTCCGAGGAAATTACCATCAAATAGTGCTATTGTTGGTTCTTCAAATTTAAATACAGAGAAGGCTTGGTGGGCATATGTGCCTGACATACTGATATTCTATGCAAAAGGGCTTCATCGGGGCCACAAGAATCTCTTTCAGGCACTTCCAAGGTTGTTAACCCTATGGTTTGACTTTGGGACTATGTATGAAAGGAGTGGCACATCATCCAATAAGGATCTCAAAAATGTCCACATGATGGTGATGAGATGCATGCGAGGGTGTTTGAAGGACTTGCCAACATATCAGTGGCTAACAGTACTGCCACAGTTGGTTTCAAGAATCTGCCACCAGAATGAGGAAGTAGTTCGATTGGTCAAAAGCATCATCACATCAGTTCTCCGGCAATACCCACAACAAGCCCTGTGGATTATGGCAGCGGTTTCAAAATCCACTGTTCCATCCAGGAGGGATGCAGCTGCTGAAATTCTACAGGAGGCACGGAAAGGGTTCAGCCAAGGAACTGGTGGAAGCAATCTGTTTGCTCAGTTTGCCAGTCTGATTGATCATTTTATCAAGTTGTGCTTCCATGCTTGTCAGACAAAGGCGAAAACAATCAATGTCTCTACTGAATTTAGTCTCTTAAAGAGGATGATGCCACTGGGAATTATCATGCCAATTCAGCAATCTCTAACTGTTAGCCTACCGACATACGATGGGAAGCTCACTGACTCACTTAAGTCTGATATCTTTTCTGCGACTGATCTTCCTACAATATCAGGAATACGTGATGAGGCTGAGATTCTTTCTTCCCTTCAGCGACCTAAGAAAATTGTTCTATTGGGCAGCGACGGCATTGAACGTCCGTTCCTCTGCAAACCCAAGGATGACCTCAGGAAAGATGCCCGGATGATGGAGTTCACAGCAATGATAAACCGTTTGTTGTCCAAATACCCAGCAAGCCGTCGGAGGAAGCTCTACATTCGCACCTTTGCAGTAATTCCTTTGACAGAGGATTGTGGCATGATAGAATGGGTGCCCCACACACGTGGACTTCGGCATATACTTCAAGACATATATATGAACTGCGGAAACTTTGGTATTGATACAAATTCAAAGATCAAGCGCTTATATGATCAATGCAAGGGTAAAATACCAGAAGATGAGATGTTGAAGGACAAAATTCTTCCAATGTTCCCTCCAGTTTTCCACAAGTGGTTCCTGACCACTTTTTCTGAGCCAGCTGCTTGGTTTAGGGCACGGATTGCTTATGCACACACTACTGCAGTTTGGTCCATGGTTGGACATATTGTGGGGCTTGGTGACCGACACGGGGAAAACATTCTTTTTGATTCTACAACAGGTGATTGTGTTCATGTTGATTTCAGTTGCTTATTCGATAAAGGCTTGCAGTTGGAGAAGCCTGAACTGGTGCCTTTCAGATTGACTCAGAATATGATTGATGGCTTGGGCATCACTGGTTATGAGGGAATCTTTTTGAGGATCTGTGAAATCACACTTTCAGTACTGAGGATGCATCGGGAGACATTGATGAGTGTTCTTGAGACTTTTGTCCATGATCCTCTTGTAGAATGGACAAAATCACACAAATCTAGTAGAGTAGAAGTTCAGAATCCACACGCACAGCTAGCCATCAGTAACATTGAGGCAAGATTGCAAGGAGTAGTTGTCGGTGTCGGAGCAGCACCATCTTTGCCCTTGGCTGTAGAAGGTCAGGCTCGTCGATTAATAGCTGAAGCAGTCTCCCACAAAAATCTCGGAAAGATGTATATCTGGTGGATGCCATGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000723 GO:0000726 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010212 GO:0010332 GO:0010833 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031323 GO:0031347 GO:0032200 GO:0032204 GO:0032501 GO:0032504 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043247 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051276 GO:0051321 GO:0051716 GO:0055044 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03460 ko04110 ko04115 ko04214 ko04218 ko05165 ko05166 map03460 map04110 map04115 map04214 map04218 map05165 map05166

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase UME

Protein Analysis

2719

Amino Acids

307.1

Weight (kDa)

6.59

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UME	PF08064	1101 - 1201	2.9e-16	UME (NUC010) domain
M-HEAT_ATR	PF25030	1485 - 1730	9.2e-33	Serine/threonine-protein kinase ATR, M-HEAT region
FAT	PF02259	1797 - 2176	3.5e-59	FAT domain
HEAT_ATR	PF23593	2203 - 2302	4.2e-32	Serine/threonine-protein kinase ATR-like, HEAT repeats
PI3_PI4_kinase	PF00454	2404 - 2648	3.4e-56	Phosphatidylinositol 3- and 4-kinase
FATC	PF02260	2688 - 2719	1e-12	FATC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40820 AT5G40820 AT5G40820 AT5G40820
fragaria_vesca	FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770
malus_domestica	MD05G1126600.v1.1
prunus_persica	Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1
pyrus_communis	pycom05g12250 pycom10g11100 pycom10g11110
rosa_chinensis	RchiOBHm_Chr6g0279121
rosa_laevigata	RLG00000013166
rosa_multiflora	Rmu_sc0014203.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189110
rosa_rugosa	Rorug06G0122400
rosa_samantha	Rh6AG231100 Rh6BG236000 Rh6CG238100 Rh6DG229700
rosa_wichuraiana	Rw6G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1901
AarI	CACCTGC	2 cut(s)	5406, 5667
AasI	GACNNNNNNGTC	1 cut(s)	1540
AatII	GACGTC	2 cut(s)	87, 801
Acc36I	ACCTGC	4 cut(s)	3017, 5406, 5667, 6132
AccB1I	GGYRCC	3 cut(s)	3046, 7381, 7777
AccB7I	CCANNNNNTGG	1 cut(s)	6604
AccI	GTMKAC	3 cut(s)	1568, 1635, 4909
AccII	CGCG	4 cut(s)	108, 158, 248, 1484
AclI	AACGTT	1 cut(s)	5970
AcoI	YGGCCR	3 cut(s)	3, 3000, 4200
AcvI	CACGTG	1 cut(s)	7394
AcyI	GRCGYC	2 cut(s)	84, 798
AfeI	AGCGCT	1 cut(s)	7472
AflII	CTTAAG	3 cut(s)	1016, 1468, 7082
AflIII	ACRYGT	5 cut(s)	1144, 1726, 4921, 5304, 7391
AgeI	ACCGGT	1 cut(s)	4362
AhdI	GACNNNNNGTC	1 cut(s)	2833
AjiI	CACGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	4 cut(s)	2775, 2807, 2874, 2906
AleI	CACNNNNGTG	1 cut(s)	7392
AloI	GAACNNNNNNTCC	2 cut(s)	7197, 7229
Alw21I	GWGCWC	5 cut(s)	33, 367, 1986, 3947, 6005
AlwNI	CAGNNNCTG	4 cut(s)	440, 2585, 4213, 6827
Aor51HI	AGCGCT	1 cut(s)	7472
ApaI	GGGCCC	1 cut(s)	4042
ArsI	GACNNNNNNTTYG	2 cut(s)	4922, 4954
AseI	ATTAAT	2 cut(s)	2430, 8093
AsiGI	ACCGGT	1 cut(s)	4362
Asp700I	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5068, 6711, 6854, 7686
AspLEI	GCGC	3 cut(s)	110, 4572, 7473
AsuC2I	CCSGG	3 cut(s)	219, 5206, 7252
AsuII	TTCGAA	1 cut(s)	2812
AsuNHI	GCTAGC	3 cut(s)	3058, 3554, 7993
AvaII	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4360, 4897, 6368, 7638
AxyI	CCTNAGG	2 cut(s)	936, 7238
BaeGI	GKGCMC	3 cut(s)	4042, 7386, 7606
BalI	TGGCCA	3 cut(s)	5, 3002, 4202
BamHI	GGATCC	1 cut(s)	6204
BanI	GGYRCC	3 cut(s)	3046, 7381, 7777
BanII	GRGCYC	5 cut(s)	33, 367, 1986, 3947, 4042
BarI	GAAGNNNNNNTAC	2 cut(s)	5637, 5669
BauI	CACGAG	2 cut(s)	26, 4533
BbrPI	CACGTG	1 cut(s)	7394
BbsI	GAAGAC	3 cut(s)	1395, 2595, 2829
Bbv12I	GWGCWC	5 cut(s)	33, 367, 1986, 3947, 6005
BceAI	ACGGC	5 cut(s)	95, 219, 2838, 7213, 7293
BcgI	CGANNNNNNTGC	2 cut(s)	3683, 3717
BciVI	GTATCC	1 cut(s)	1569
BclI	TGATCA	4 cut(s)	2971, 5452, 6910, 7480
BcnI	CCSGG	3 cut(s)	219, 5206, 7252
BfoI	RGCGCY	1 cut(s)	7474
BfrI	CTTAAG	3 cut(s)	1016, 1468, 7082
BfuAI	ACCTGC	4 cut(s)	3017, 5406, 5667, 6132
BfuI	GTATCC	1 cut(s)	1569
BglII	AGATCT	3 cut(s)	415, 3289, 3956
BmcAI	AGTACT	4 cut(s)	3436, 6324, 6666, 7872
Bme18I	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4360, 4897, 6368, 7638
BmeRI	GACNNNNNGTC	1 cut(s)	2833
BmgBI	CACGTC	1 cut(s)	139
BmrI	ACTGGG	7 cut(s)	582, 3717, 5221, 5773, 6225, 6374, 7016
BmtI	GCTAGC	3 cut(s)	3062, 3558, 7997
BmuI	ACTGGG	7 cut(s)	582, 3717, 5221, 5773, 6225, 6374, 7016
BoxI	GACNNNNGTC	2 cut(s)	2864, 7916
BpiI	GAAGAC	3 cut(s)	1395, 2595, 2829
BplI	GAGNNNNNCTC	2 cut(s)	3491, 3523
BpmI	CTGGAG	4 cut(s)	1096, 3476, 6019, 7530
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	2812
BpuEI	CTTGAG	7 cut(s)	2000, 3626, 5693, 5847, 5876, 6132, 7928
BpuMI	CCSGG	3 cut(s)	219, 5206, 7252
Bsa29I	ATCGAT	2 cut(s)	3339, 3793
BsaAI	YACGTR	4 cut(s)	5023, 5159, 7133, 7394
BsaBI	GATNNNNATC	4 cut(s)	375, 1716, 2970, 8135
BsaHI	GRCGYC	2 cut(s)	84, 798
BsaI	GGTCTC	3 cut(s)	1526, 3509, 4949
BsaWI	WCCGGW	1 cut(s)	4362
BsaXI	ACNNNNNCTCC	6 cut(s)	4352, 4382, 5705, 5735, 8019, 8049
Bse118I	RCCGGY	3 cut(s)	292, 3550, 4362
Bse21I	CCTNAGG	2 cut(s)	936, 7238
Bse3DI	GCAATG	7 cut(s)	917, 1509, 2077, 3371, 3716, 5535, 7278
Bse8I	GATNNNNATC	4 cut(s)	375, 1716, 2970, 8135
BseCI	ATCGAT	2 cut(s)	3339, 3793
BseJI	GATNNNNATC	4 cut(s)	375, 1716, 2970, 8135
BseMI	GCAATG	7 cut(s)	917, 1509, 2077, 3371, 3716, 5535, 7278
BseRI	GAGGAG	4 cut(s)	54, 1009, 4655, 6179
BseSI	GKGCMC	3 cut(s)	4042, 7386, 7606
BseYI	CCCAGC	1 cut(s)	7300
BsgI	GTGCAG	7 cut(s)	945, 2446, 3551, 4068, 4149, 4500, 5414
Bsh1236I	CGCG	4 cut(s)	108, 158, 248, 1484
Bsh1285I	CGRYCG	1 cut(s)	268
BshNI	GGYRCC	3 cut(s)	3046, 7381, 7777
BshTI	ACCGGT	1 cut(s)	4362
BshVI	ATCGAT	2 cut(s)	3339, 3793
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	5 cut(s)	33, 367, 1986, 3947, 6005
BsiSI	CCGG	7 cut(s)	219, 293, 3551, 4363, 5205, 6748, 7252
BslFI	GGGAC	5 cut(s)	128, 700, 874, 4373, 6559
BsmBI	CGTCTC	2 cut(s)	3242, 5780
BsmFI	GGGAC	5 cut(s)	128, 700, 874, 4373, 6559
BsmI	GAATGC	4 cut(s)	1500, 2456, 4106, 4258
Bso31I	GGTCTC	3 cut(s)	1526, 3509, 4949
Bsp119I	TTCGAA	1 cut(s)	2812
Bsp120I	GGGCCC	1 cut(s)	4038
Bsp1286I	GDGCHC	8 cut(s)	33, 367, 1986, 3947, 4042, 6005, 7386, 7606
Bsp1407I	TGTACA	2 cut(s)	2359, 3106
Bsp19I	CCATGG	5 cut(s)	232, 897, 1745, 7641, 8150
BspDI	ATCGAT	2 cut(s)	3339, 3793
BspFNI	CGCG	4 cut(s)	108, 158, 248, 1484
BspHI	TCATGA	2 cut(s)	1683, 3823
BspMAI	CTGCAG	6 cut(s)	445, 4945, 5526, 5611, 6273, 7633
BspMI	ACCTGC	4 cut(s)	3017, 5406, 5667, 6132
BspOI	GCTAGC	3 cut(s)	3062, 3558, 7997
BspT104I	TTCGAA	1 cut(s)	2812
BspT107I	GGYRCC	3 cut(s)	3046, 7381, 7777
BspTI	CTTAAG	3 cut(s)	1016, 1468, 7082
BspTNI	GGTCTC	3 cut(s)	1526, 3509, 4949
BsrDI	GCAATG	7 cut(s)	917, 1509, 2077, 3371, 3716, 5535, 7278
BsrFI	RCCGGY	3 cut(s)	292, 3550, 4362
BsrGI	TGTACA	2 cut(s)	2359, 3106
BssAI	RCCGGY	3 cut(s)	292, 3550, 4362
BssNAI	GTATAC	1 cut(s)	1569
BssNI	GRCGYC	2 cut(s)	84, 798
BssSI	CACGAG	2 cut(s)	26, 4533
Bst1107I	GTATAC	1 cut(s)	1569
Bst2BI	CACGAG	2 cut(s)	26, 4533
Bst6I	CTCTTC	3 cut(s)	2310, 2682, 5694
BstACI	GRCGYC	2 cut(s)	84, 798
BstAFI	CTTAAG	3 cut(s)	1016, 1468, 7082
BstAPI	GCANNNNNTGC	3 cut(s)	1506, 5392, 7610
BstAUI	TGTACA	2 cut(s)	2359, 3106
BstBAI	YACGTR	4 cut(s)	5023, 5159, 7133, 7394
BstBI	TTCGAA	1 cut(s)	2812
BstDSI	CCRYGG	5 cut(s)	232, 897, 1745, 7641, 8150
BstEII	GGTNACC	1 cut(s)	7667
BstENI	CCTNNNNNAGG	1 cut(s)	4975
BstFNI	CGCG	4 cut(s)	108, 158, 248, 1484
BstH2I	RGCGCY	1 cut(s)	7474
BstHHI	GCGC	3 cut(s)	110, 4572, 7473
BstMCI	CGRYCG	1 cut(s)	268
BstPAI	GACNNNNGTC	2 cut(s)	2864, 7916
BstPI	GGTNACC	1 cut(s)	7667
BstSLI	GKGCMC	3 cut(s)	4042, 7386, 7606
BstSNI	TACGTA	1 cut(s)	5159
BstUI	CGCG	4 cut(s)	108, 158, 248, 1484
BstV2I	GAAGAC	3 cut(s)	1395, 2595, 2829
BstXI	CCANNNNNNTGG	6 cut(s)	2251, 5799, 6215, 6869, 7394, 7593
BstZ17I	GTATAC	1 cut(s)	1569
Bsu15I	ATCGAT	2 cut(s)	3339, 3793
Bsu36I	CCTNAGG	2 cut(s)	936, 7238
BsuI	GTATCC	1 cut(s)	1569
BsuTUI	ATCGAT	2 cut(s)	3339, 3793
BtgI	CCRYGG	5 cut(s)	232, 897, 1745, 7641, 8150
BtrI	CACGTC	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	4722
BveI	ACCTGC	4 cut(s)	3017, 5406, 5667, 6132
CaiI	CAGNNNCTG	4 cut(s)	440, 2585, 4213, 6827
CciI	TCATGA	2 cut(s)	1683, 3823
CfoI	GCGC	3 cut(s)	110, 4572, 7473
Cfr10I	RCCGGY	3 cut(s)	292, 3550, 4362
ClaI	ATCGAT	2 cut(s)	3339, 3793
CseI	GACGC	2 cut(s)	5481, 6332
CspAI	ACCGGT	1 cut(s)	4362
CspCI	CAANNNNNGTGG	2 cut(s)	6752, 6787
DraI	TTTAAA	5 cut(s)	483, 1440, 2112, 4093, 6417
DrdI	GACNNNNNNGTC	1 cut(s)	1540
DriI	GACNNNNNGTC	1 cut(s)	2833
DseDI	GACNNNNNNGTC	1 cut(s)	1540
EaeI	YGGCCR	3 cut(s)	3, 3000, 4200
Eam1104I	CTCTTC	3 cut(s)	2310, 2682, 5694
Eam1105I	GACNNNNNGTC	1 cut(s)	2833
EarI	CTCTTC	3 cut(s)	2310, 2682, 5694
EciI	GGCGGA	2 cut(s)	2336, 6105
Ecl136II	GAGCTC	4 cut(s)	31, 365, 1984, 3945
Eco105I	TACGTA	1 cut(s)	5159
Eco147I	AGGCCT	2 cut(s)	4073, 4238
Eco24I	GRGCYC	5 cut(s)	33, 367, 1986, 3947, 4042
Eco31I	GGTCTC	3 cut(s)	1526, 3509, 4949
Eco32I	GATATC	3 cut(s)	831, 1526, 7093
Eco47I	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4360, 4897, 6368, 7638
Eco47III	AGCGCT	1 cut(s)	7472
Eco53kI	GAGCTC	4 cut(s)	31, 365, 1984, 3945
Eco72I	CACGTG	1 cut(s)	7394
Eco81I	CCTNAGG	2 cut(s)	936, 7238
Eco91I	GGTNACC	1 cut(s)	7667
EcoICRI	GAGCTC	4 cut(s)	31, 365, 1984, 3945
EcoNI	CCTNNNNNAGG	1 cut(s)	4975
EcoO109I	RGGNCCY	3 cut(s)	4038, 4039, 4968
EcoO65I	GGTNACC	1 cut(s)	7667
EcoRI	GAATTC	1 cut(s)	1647
EcoRV	GATATC	3 cut(s)	831, 1526, 7093
EcoT22I	ATGCAT	7 cut(s)	376, 1410, 1553, 1802, 3471, 6620, 7884
EcoT38I	GRGCYC	5 cut(s)	33, 367, 1986, 3947, 4042
Esp3I	CGTCTC	2 cut(s)	3242, 5780
FaqI	GGGAC	5 cut(s)	128, 700, 874, 4373, 6559
FauI	CCCGC	2 cut(s)	3792, 5622
FauNDI	CATATG	2 cut(s)	3188, 6442
FbaI	TGATCA	4 cut(s)	2971, 5452, 6910, 7480
FblI	GTMKAC	3 cut(s)	1568, 1635, 4909
FriOI	GRGCYC	5 cut(s)	33, 367, 1986, 3947, 4042
GlaI	GCGC	3 cut(s)	109, 4571, 7472
GsaI	CCCAGC	1 cut(s)	7304
GsuI	CTGGAG	4 cut(s)	1096, 3476, 6019, 7530
HaeII	RGCGCY	1 cut(s)	7474
HapII	CCGG	7 cut(s)	219, 293, 3551, 4363, 5205, 6748, 7252
HgaI	GACGC	2 cut(s)	5481, 6332
HhaI	GCGC	3 cut(s)	110, 4572, 7473
Hin1I	GRCGYC	2 cut(s)	84, 798
Hin6I	GCGC	3 cut(s)	108, 4570, 7471
HinP1I	GCGC	3 cut(s)	108, 4570, 7471
HincII	GTYRAC	4 cut(s)	2696, 2983, 4054, 6525
HindII	GTYRAC	4 cut(s)	2696, 2983, 4054, 6525
HindIII	AAGCTT	6 cut(s)	635, 1739, 2751, 2945, 5241, 6150
HpaI	GTTAAC	1 cut(s)	6525
HpaII	CCGG	7 cut(s)	219, 293, 3551, 4363, 5205, 6748, 7252
Hpy99I	CGWCG	6 cut(s)	86, 89, 143, 7199, 7314, 8091
Hsp92I	GRCGYC	2 cut(s)	84, 798
HspAI	GCGC	3 cut(s)	108, 4570, 7471
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Ksp22I	TGATCA	4 cut(s)	2971, 5452, 6910, 7480
KspAI	GTTAAC	1 cut(s)	6525
MfeI	CAATTG	4 cut(s)	1236, 1781, 6024, 6084
MhlI	GDGCHC	8 cut(s)	33, 367, 1986, 3947, 4042, 6005, 7386, 7606
MlsI	TGGCCA	3 cut(s)	5, 3002, 4202
MluNI	TGGCCA	3 cut(s)	5, 3002, 4202
Mox20I	TGGCCA	3 cut(s)	5, 3002, 4202
Mph1103I	ATGCAT	7 cut(s)	376, 1410, 1553, 1802, 3471, 6620, 7884
MroNI	GCCGGC	1 cut(s)	292
MroXI	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5068, 6711, 6854, 7686
MscI	TGGCCA	3 cut(s)	5, 3002, 4202
Msp20I	TGGCCA	3 cut(s)	5, 3002, 4202
MspA1I	CMGCKG	9 cut(s)	959, 2627, 3535, 4006, 4193, 5115, 6785, 6824, 7589
MspCI	CTTAAG	3 cut(s)	1016, 1468, 7082
MspI	CCGG	7 cut(s)	219, 293, 3551, 4363, 5205, 6748, 7252
MunI	CAATTG	4 cut(s)	1236, 1781, 6024, 6084
Mva1269I	GAATGC	4 cut(s)	1500, 2456, 4106, 4258
MvnI	CGCG	4 cut(s)	108, 158, 248, 1484
NaeI	GCCGGC	1 cut(s)	294
NciI	CCSGG	3 cut(s)	219, 5206, 7252
NcoI	CCATGG	5 cut(s)	232, 897, 1745, 7641, 8150
NdeI	CATATG	2 cut(s)	3188, 6442
NgoMIV	GCCGGC	1 cut(s)	292
NheI	GCTAGC	3 cut(s)	3058, 3554, 7993
NmeAIII	GCCGAG	1 cut(s)	2375
NmuCI	GTSAC	8 cut(s)	475, 794, 1542, 1889, 2180, 5309, 5326, 7667
NsiI	ATGCAT	7 cut(s)	376, 1410, 1553, 1802, 3471, 6620, 7884
NspV	TTCGAA	1 cut(s)	2812
OliI	CACNNNNGTG	1 cut(s)	7392
PaeI	GCATGC	4 cut(s)	1821, 3473, 5386, 6622
PagI	TCATGA	2 cut(s)	1683, 3823
PaqCI	CACCTGC	2 cut(s)	5406, 5667
PasI	CCCWGGG	1 cut(s)	4042
PceI	AGGCCT	2 cut(s)	4073, 4238
PciI	ACATGT	4 cut(s)	1144, 1726, 4921, 5304
PctI	GAATGC	4 cut(s)	1500, 2456, 4106, 4258
PdiI	GCCGGC	1 cut(s)	294
PdmI	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5068, 6711, 6854, 7686
PflFI	GACNNNGTC	1 cut(s)	2133
PflMI	CCANNNNNTGG	1 cut(s)	6604
PfoI	TCCNGGA	2 cut(s)	217, 6809
PinAI	ACCGGT	1 cut(s)	4362
PmaCI	CACGTG	1 cut(s)	7394
PmlI	CACGTG	1 cut(s)	7394
Ppu21I	YACGTR	4 cut(s)	5023, 5159, 7133, 7394
PscI	ACATGT	4 cut(s)	1144, 1726, 4921, 5304
PshAI	GACNNNNGTC	2 cut(s)	2864, 7916
PshBI	ATTAAT	2 cut(s)	2430, 8093
PsiI	TTATAA	1 cut(s)	1901
Psp124BI	GAGCTC	4 cut(s)	33, 367, 1986, 3947
Psp1406I	AACGTT	1 cut(s)	5970
PspCI	CACGTG	1 cut(s)	7394
PspEI	GGTNACC	1 cut(s)	7667
PspFI	CCCAGC	1 cut(s)	7300
PspOMI	GGGCCC	1 cut(s)	4038
PstI	CTGCAG	6 cut(s)	445, 4945, 5526, 5611, 6273, 7633
PstNI	CAGNNNCTG	4 cut(s)	440, 2585, 4213, 6827
PsyI	GACNNNGTC	1 cut(s)	2133
PvuII	CAGCTG	7 cut(s)	959, 2627, 3535, 4193, 5115, 6824, 7589
SacI	GAGCTC	4 cut(s)	33, 367, 1986, 3947
ScaI	AGTACT	4 cut(s)	3436, 6324, 6666, 7872
SduI	GDGCHC	8 cut(s)	33, 367, 1986, 3947, 4042, 6005, 7386, 7606
SfuI	TTCGAA	1 cut(s)	2812
SinI	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4360, 4897, 6368, 7638
SmiI	ATTTAAAT	1 cut(s)	6417
SnaBI	TACGTA	1 cut(s)	5159
SphI	GCATGC	4 cut(s)	1821, 3473, 5386, 6622
SseBI	AGGCCT	2 cut(s)	4073, 4238
SspI	AATATT	2 cut(s)	1342, 6311
SstI	GAGCTC	4 cut(s)	33, 367, 1986, 3947
StuI	AGGCCT	2 cut(s)	4073, 4238
SwaI	ATTTAAAT	1 cut(s)	6417
TaqII	GACCGA	3 cut(s)	254, 2199, 7686
TatI	WGTACW	9 cut(s)	1099, 1610, 2359, 3106, 3434, 3628, 6322, 6664, 7870
TauI	GCSGC	3 cut(s)	53, 248, 4009
TseFI	GTSAC	8 cut(s)	475, 794, 1542, 1889, 2180, 5309, 5326, 7667
Tsp45I	GTSAC	8 cut(s)	475, 794, 1542, 1889, 2180, 5309, 5326, 7667
TspGWI	ACGGA	7 cut(s)	290, 1060, 2073, 4811, 6862, 7200, 7621
Tth111I	GACNNNGTC	1 cut(s)	2133
Van91I	CCANNNNNTGG	1 cut(s)	6604
Vha464I	CTTAAG	3 cut(s)	1016, 1468, 7082
VpaK11BI	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4360, 4897, 6368, 7638
VspI	ATTAAT	2 cut(s)	2430, 8093
XagI	CCTNNNNNAGG	1 cut(s)	4975
XbaI	TCTAGA	1 cut(s)	4409
XcmI	CCANNNNNNNNNTGG	3 cut(s)	6106, 6651, 6869
XmiI	GTMKAC	3 cut(s)	1568, 1635, 4909
XmnI	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5068, 6711, 6854, 7686
ZraI	GACGTC	2 cut(s)	85, 799
ZrmI	AGTACT	4 cut(s)	3436, 6324, 6666, 7872
Zsp2I	ATGCAT	7 cut(s)	376, 1410, 1553, 1802, 3471, 6620, 7884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.