Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004721

Physical Location & Seq

Genomic Coordinates Reverse (-)

41516162 .. 41529933

Gene Structure 13772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 8016 bp

ATGGCCAACCTGAGTAGCCTACTCCACGAGCTCCGAGAACGCATAGCAGCCTCCTCATCCACTCCTCCTAACAACTCACACGACGTCGCTTTGGAGATCCGATTCCGCGCCGTCCTTCCCAACCTTCTTCAAGCTTACGTCGTCCCCTCTCCCTCCGCGGATGAGAGAGAAGTGATAGCTGTATTGAGGTTCATCGGTTACACGGTGAAGCATTTTCCCGGAGTCTTTTACCATGGCAAGGCTGCCGCGATTCTTCCTATGATCGGTCGTATTCTGCCTTTCTTTGCAGAGCCGGCGTTCCGTTCTAGGCATGGAGTGATATTTGATACGCTTGGATCGCTTTTAACCTTACTTCGTAGTGGAGCTCAGGATGCATATCGTCAGTTTTTTGTAGATTCCATGCTCGTTGTTCAAGATCTTTTGTGTGTCGCATCAGTCTCTGCAGACATATCAAGTTTTACAGAATCAACTAGAGTGACTTTAAAGTGTTTCTGCGAGTCCTTCAATGCAATTTTTGATGATCCTTCACATCTTGGTGATCTCCCACATAGTATCAAACCTGTTGATGGCACTGGGATCTTGATTAACCTTACAGGAAAAGCAAGGTGGCAACCTTTCGCAACTTGGATGATTAAGCTTCTTGGAAAATGCTTAACTGAAGGAACTCTATATGTGGATGGACTCATCAATATGCCATTTGTTATGGCTGCATGGTCCCTTTTTTGTTATGGGGATGCTGATTTGCACATGGCATTTTTTGAATTTGCACGCATCGTTGGATCTGTGATAAAATGTGACGTCATTCCTTATCATAACATAGTCCAGTCGATATCATCTATATTAAGCGAGGACAAAGAGGGGACTCCTGCATTTAGAAACACGGTTTATGATTCGTCCATGGGTGGTTGCCTAGAGGCATTGCACTCTAATTGCCCTGAGGGTATAGTCAAGCTAACAGCTGCACATTTTGTCAATGTATTTCCTCATTCAATGAGGAGAACCCGAAGCCAGGAGCTTAAGGTTGCATTGTGCAACACATACATACGGATTGCGAAGATTTGCCCCCCTCATATCTGGAGGCCAGAAATTCTCCTATATGTTGGAGAAAAAAGACCTATTGAGGATGTGGATTCTTTCAACACTAAACGCCAAAAGGTTGATGAAAAAATCATCAATCCTGATTCTAATATTCAGTTGGAATGGCAGTGTGCTCATATAGTTCCTTGTGAGACAGAAGACTATGCAAATCAGATGCATAAATCACTCCTTTCTTTTGCTGAATGTTTAAAATCTCCTGGTGTCTGTCCTAATTCCTTAAGACCTGATCTCGCGTTAATGGCTCTTAGCATTCTTTGCATTGCGTTCTGTAGATATCCTGAGACCAATCTGTCACTATGCATCTTTCATCAGATGTATACATGGATACCTTGGATATGCCAACAGGCAAAGCAAGGAAGTACATTTGAACTTGATATTTCCATCTACCTGGAAGGAATTCACTGTATGTTGCGGTTGCAAAATTGCTTAATCATGAAGTGTATGGACAGTACGCTTGTCAATGCTGATCTTATACATGTCCTTCTAAAGCTTCCATGGACCCATTCTCATGTAGTTACTGACTGCCATCAATTGTGGAAAACAAAATGCATCTCAGTTCAAGTTGCATGCAAACTTGGTCATAGCACAAGAATTGAAACTCAACTTGAAGTATTGGATTTGAGTCTCAATGATGAATGTGACGAAGTTATAATTGAAGCTATAACTTCTATGCCCGTGATTGTCATGTGGTCTGGCCTCAGTGGACTTTCTCACATATTCAGAAGGCTTGAGCTCTTGGGGCGACAGAGAAGTGAGAAGGTTAAGAATATCATTCCCTTTTCTCTTGGTTTTTTGTCATGTCTTTACGGATCTCATAGCAATGGAGATGACATAAATAGAAGTCAGTGTAAACTATTTTTAAAAATGAAAAGTGAGAGACACAGTCAAACAGTGGATTATTTACTGCAAGGATTCTGGTGTTCAAAGTGTGACCGAAGTGTTCAACACAATACTGAGTCATATTCAAATATCATAAATCTACCTGACAAGCCCAGAGAATTGGACTGTAATTTTCTCCATCTTCAGTCTACGTATTTTCAGCTTCTTAATGATGAGTCATCTGAAGAGATTCAAGTGGCTTGTGTGAAAAATATCCGCCGAGTTCTTGTACATGGGGGCATAGAGAATCTGTTGGAGTCAAGATTTGAATGGATTAAATGTGTTAAATATCTACTCATTAATACCAAGAAGGCTATAAGAGAAGCATTCTGCACTCAGATTAGTTCATTCATTGAGGATTCAATTTTGAGCTGCTTATTTCCTGATGAGGGCATGTCAAGTAATGGTAGAGAAGAAAGGTTTCTGAACATAATCAACAGCTCCTTTTCAGAAACTGAAGACCTCCAAATCATTGAGACTCTTTTGGAATCAACAGCTGAAATAATGATTGCAGTTGATATTCAGAGTCAATTATTCTTGTTTTCTCTTCTTTTGTTGGTTGGTCAACTTGATAATCCACACACGACAGTGAGAATGATTGCAGCGAAGTTGATACACAAAGCTTGCTGTTTTCATCTTAAAGGAGGTTTCCAAGTAATCCTTCTGAAAGTTGTTCATGTTCGAAATGAGCTATTTGACTATCTGTCTTCGAGCCTCTCTAGCCGTCCGACTATGGTCCAAGAGTTTGCAGAATCAGTTCTTGGTATTGAAATAGAAGAACTTGTCAAGAAAATGGTTCCCGTAGTTCTTCCGAAGCTTGTAGTGTCTCAGCAGGATGATGATCAAGCAGTTGACACCTTATATGAACTGGCCAAGTGGTTAAACACCGATGTTGCAGGTCTTATAGTTCTATGGGTGCCAAAAGTGCTAGCTTTTGCTCTCCATCAACCAGATGTGCGAGAATTAGATGCTGCTGTACAGTTTTACCATACACAGATCAGTTCTAACAAAAGAGAAATCTTTGCTGCTGCATTAAATAATCTTTTAGATGAACTCATATGCTTTCTGGATGGAGGTGATTCAGATGAGATAAGCGGAAGGTTAGCAAGAGTACCTGAGACGATAAAAGAGGTTGCTAGAGTTTTGGATGAAGGTGAAGATCTACCAAACTTTTTGAGGAATCATTTTGCCCACCTTCTTAACAGTATCGATAGAAAGATGCTCCATGCAGAAGAATTTTCATTGCAGAAACAAGCCTTGCAACGAATTGAGATGCTAATTAAAATGATGGGTCGTCATCTTAGTACTTATGTGCCTAAACTAATGGTTCTTCTCATGCATGCTATTGATAAAGACAGCCTCCAGAGTGAGGGTCTCTCAGTGTTGCATTTTTTCATTGTGCAGCTGGTGAAAGTATCACCGGCTAGCACTAAACATGTAATTTCACAAGTTTTTGCTGCCCTTATTCCCTTTCTTGAGAGAGATGAAGAAAGTCCAGTACATCTGGATAAAGTGGTAAAAATTTTAGAAGAACTTGTGCTAAATAACAGGGATATTCTAAAGCAGCATATTCGTGAGTTCCCTCCATTGCCCAGTATTCCAGCCTTAATAAAAGTGAACAAGGCTATACAAGAAGCCAGAGGGTCAATGACTTTGAGGGATCGATTGCGGGATGTTGTTGATGGTCTGAATCATGACAGCTTAAATGTGAGATACATGGTTGTGTGTGAGTTGAAAAAGTTGCTGAACCTGGAACGGGAAGGGGTTACATCTCTAATAACTGCTGAAGGTGGTGCGGATATGGAAATTTTGAGCTCTTTAATCAGATCTCTACTTAAAGGATGTGCTGAAGAATCAAGGAGAGCAGTTGGACAGCGGCTAAAGTTGGTGTGTGCTGACTGCCTTGGGGCCCTGGGTGCAGTTGACCCTGCTAAAGTGAAGGCCTTTTCATGCCAACGCTTTAAAATTGAATGCTCTGATGATGACCTTATCTATGAGTTGATTCAAAAGCAACTTGCACGGGCCTTTAGAGCTGCACCTGACACTATAATTCAAGATTCAGCTGTAGTGGCCATACAGGAACTGCTAAAGATTGCTGGTTGTGAGGCCTCATTACATGAGAATGCTGCTGCTTCTATGTTGGCTCCAAAGGACAAAGAGCCTCTGATGGGTTCTGCTTCTGGAATGATGACTACTGATGGTACAAATGAGATGACTAGAAGGGGTCAGAGATTGTGGGACCGGTTCTCCAATTATGTGAAAGAAATAATTGCCCCTTATTTGTCCTCTAGATTTCAACTTCCTAATGTTGCTGATCCTGTATTTGTTGGCCCAATTTACCGTCCATCTATGTCATTCAGAAGATGGATATTCTTCTGGATAAGAAAGCTGACTGCACATGCTACTGGTTCTCGTGCAAGAATTTTCAATGCTTGTCGAGGTATAGTGCGCCAGGATATGCAAACAGCAATTTATCTGCTTCCATATTTAGTTCTGAATGCTGTCTGTCATGGCACAGAGGAGGCACGCTATGGCATAACAGAAGAAATCCTATATGTTCTTGATGTTGCTGCATCTCATAACAGTGAGGATGCAGTGCATGGTGTCAATGGTCGGAAAAATGAAGTTTGTGTTCAAGCTGTGTTCATTCTCCTTGATAATCTTGGTCAATGGGTGGATGACGTTACACAAGAACTATTCCGTTCTTTTCAATTATTAGCTTCTAAGCAACAAATATCCAAGACCAGGCATCAAACTCAGAATACTACCAATCAGGACCAACTTCGTCTACAGTGTGAACATGTTTCAAAACTCTTGTCTGCAGTTCCAAAGGAGACCCTTGCCAGGGCCTCCTTCAGGTGTCAGGCTTATGCAAGATCCTTCATGTATTTTGAGTTGTACGTGAGGGGAAAGTCAGGTTCTTTCAACCCTGCATCTGAGCGAAGTGGTTCATTTGATGATGCAGATGTTTCATATCTGATGGAAATATACAGCTGCCTGGATGAGCCTGATGGTCTTTCTGGATTTGCATTTTTACGTAAATCTTTGGAATTACAAGACCAGCTCTTGATAAACAAAAAAGCCGGGAACTGGGCAGAGGTTTTAACTTCTTGTGAACAAGCTTTGCAGATGGAACCAACATCAGTTCAAAAGCAGTCTGATGTGCTTAACTGTTTATTAAACATGTGTCACCTTCAGGCTATGGTGACTCATGTGGATGGTTTAATGTGTAGGATTCCCCAATACAAGAAAACATGGTGCATGCAAGGTGTGCAGGCAGCATGGAGACTTGGCAGGTGGGATTTGATGGATGAGTACCTTAGTGGAGCTGATCAAGAAGGTTTACTTTGTAGCAGTTCTGAAAGTAATGCGTCATTTGATATGGATGTTGCAAAAATTCTGCAGGCAATGATGAAGAAGGATCAGTTCTCAGTTGAAGAAAAAATTGCCCTCTCCAAGCAAGCTCTAATTGCTCCCCTTTCTGCTGCAGGCATGGATTCTTATGTGCGGGCTTACCCATTTGTCGTGAAACTTCACCTGCTACGAGAGCTTGAGGATTTTTATACTCTTCTTGGTGATGCTTCTTTCTTGGAGAAATCGTTTGCATTTGATGATCCTAAATTCTCAAAAGTGAGGGAGAACTGGGAAAACCGTCTCAGATTTACTCAGCCATCACTCTGGGCAAGAGAGCCACTTTTGGCTTTCCGAAGATTGGTTTTTGCTAACAGTGGTCTTGAGGCTCAAGTTGGGAACTGCTGGCTTCAATATGCAAAGCTCTGTCGCATGGCTGGTCATTATGAGACAGCAAATCAGGCTATTCTGGAAGCCCAAGCTACCAATGCACCTAACGTTCACATGGAGAAGGCTAAACTTCTCTGGAGCACCAGGCGATCTGATGGTGCAATTGCACAGTTGCAACAGTGTCTCTTGAACATGCCTGAAGGGATTGTAGGCTCCAATGCAATTGCATCAATTACCAGTCTTTCACTGGTTCCGCCAAACCTGCCCCCTTTAGTTAATAATACTCAAGCTTGGAATGAAAATCGAGATATTGCAAAGACACTTCTCCTCTATTCTAGGTGGATCCATTACACTGGGCAGAAGCAGAAAGAAGATGTCATAAGTCTATATAGCAGGGTGAGGGAACTGCAGCCCAAGTGGGAGAAAGGATATTTTTACATGGCTAAATATTATGAGGAAGTACTAGCTGATGCCAGGAAGCGTCAGGAAGAAAATCTTGAACTGGGTCCTAGGAAATTACCATCAAATAGTGCTATTGTTGGTTCTTCAAATTTAAATACAGAGAAGGCTTGGTGGGCATATGTGCCTGACATACTGATATTCTATGCAAAAGGGCTTCATCGGGGCCACAAGAATCTCTTTCAGGCACTTCCAAGGTTGTTAACCCTATGGTTTGACTTTGGGACTATGTATGAAAGGAGTGGCACATCATCCAATAAGGATCTCAAAAATGTCCACATGATGGTGATGAGATGCATGCGAGGGTGTTTGAAGGACTTGCCAACATATCAGTGGCTAACAGTACTACCACAGTTGGTTTCAAGAATCTGCCACCAGAATGAGGAAGTAGTTCGATTGGTCAAAAGCATCATCACATCAGTTCTCCGGCAATACCCACAACAAGCCCTGTGGATTATGGCAGCGGTTTCAAAATCCACTGTTCCATCCAGGAGGGATGCAGCTGCTGAAATTCTACAGGAGGCACGGAAAGGGTTCAGCCAAGGAACTGGTGGAAGCAATCTGTTTGCTCAGTTTGCCAGTCTGATTGATCATTTTATCAAGTTGTGCTTCCATGCTTGTCAGACAAAGGCGAAAACAATCAATGTCTCTACTGAATTTAGTCTCTTAAAGAGGATGATGCCGCTGGGAATTATCATGCCAATTCAGCAATCTCTAACTGTTAGCCTACCGACATACGATGGGAAGCTCACTGACTCACTTAAGTCTGATATCTTTTCTGCGACTGATCTTCCTACAATATCAGGAATACGCGATGAGGCTGAGATTCTTTCTTCCCTTCAGCGACCTAAGAAAATTGTTCTATTGGGCAGCGACGGCATTGAGCGTCCGTTCCTCTGCAAACCCAAGGATGACCTCAGGAAAGATGCCCGGATGATGGAGTTCACAGCAATGATAAACCGTTTGTTGTCTAAATACCCAGCAAGCCGTCGGAGGAAGCTCTACATTCGCACCTTTGCAGTAATTCCTTTGACAGAGGATTGTGGCATGATAGAATGGGTGCCCCACACACGTGGACTTCGGCATATACTTCAAGACATATATATGAACTGCGGAAACTTTGGTATTGATACAAATTCAAAGATCAAACGCTTATATGATCAATGCAAGGGTAAAATACCAGAAGATGAGATGTTGAAGGACAAAATTCTTCCAATGTTCCCTCCAGTTTTCCACAAGTGGTTCCTGACCACTTTTTCTGAGCCAGCTGCTTGGTTTAGGGCACGGATTGCTTATGCACACACTACTGCAGTTTGGTCCATGGTTGGACATATTGTGGGGCTTGGTGACCGACACGGGGAAAACATTCTTTTTGATTCTACAACAGGTGATTGTGTTCATGTTGATTTCAGTTGCTTATTCGATAAAGGCTTGCAGTTGGAGAAGCCTGAACTGGTGCCTTTCAGATTGACTCAGAATATGATTGATGGCTTGGGCATCACTGGTTATGAGGGAATCTTTTTGAGGATCTGTGAAATCACACTTTCAGTACTGAGGATGCATCGGGAGACATTGATGAGTGTTCTTGAGACTTTTGTCCATGATCCTCTTGTAGAATGGACAAAATCACACAAATCTAGTAGAGTAGAAGTTCAGAATCCACACGCACAGCTAGCCATCAGTAACATTGAGGCAAGATTGCAAGGAGTAGTTGTCGGTGTCGGAGCAGCACCATCTTTGCCCTTGGCTGTAGAAGGTCAGGCTCGTCGATTAATAGCTGAAGCAGTCTCCCACAAAAATCTCGGAAAGATGTATATCTGGTGGATGCCATGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000723 GO:0000726 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010212 GO:0010332 GO:0010833 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031323 GO:0031347 GO:0032200 GO:0032204 GO:0032501 GO:0032504 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043247 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051276 GO:0051321 GO:0051716 GO:0055044 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03460 ko04110 ko04115 ko04214 ko04218 ko05165 ko05166 map03460 map04110 map04115 map04214 map04218 map05165 map05166

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase UME

Protein Analysis

2671

Amino Acids

302.15

Weight (kDa)

6.75

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UME	PF08064	1050 - 1150	6.6e-17	UME (NUC010) domain
M-HEAT_ATR	PF25030	1437 - 1682	1.5e-32	Serine/threonine-protein kinase ATR, M-HEAT region
FAT	PF02259	1749 - 2128	3.4e-59	FAT domain
HEAT_ATR	PF23593	2155 - 2254	4.1e-32	Serine/threonine-protein kinase ATR-like, HEAT repeats
PI3_PI4_kinase	PF00454	2356 - 2600	3.3e-56	Phosphatidylinositol 3- and 4-kinase
FATC	PF02260	2640 - 2671	1e-12	FATC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40820 AT5G40820 AT5G40820 AT5G40820
fragaria_vesca	FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770
malus_domestica	MD05G1126600.v1.1
prunus_persica	Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1
pyrus_communis	pycom05g12250 pycom10g11100 pycom10g11110
rosa_chinensis	RchiOBHm_Chr6g0279121
rosa_laevigata	RLG00000013166
rosa_multiflora	Rmu_sc0014203.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189110
rosa_rugosa	Rorug06G0122400
rosa_samantha	Rh6AG231100 Rh6BG236000 Rh6CG238100 Rh6DG229700
rosa_wichuraiana	Rw6G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1748
AarI	CACCTGC	2 cut(s)	5262, 5523
AasI	GACNNNNNNGTC	1 cut(s)	1387
AatII	GACGTC	2 cut(s)	87, 801
Acc36I	ACCTGC	4 cut(s)	2864, 5262, 5523, 5988
AccB1I	GGYRCC	3 cut(s)	2893, 7237, 7633
AccB7I	CCANNNNNTGG	1 cut(s)	6460
AccI	GTMKAC	3 cut(s)	1415, 2126, 4765
AccII	CGCG	5 cut(s)	108, 158, 248, 1331, 6990
AclI	AACGTT	1 cut(s)	5826
AcoI	YGGCCR	3 cut(s)	3, 2847, 4047
AcvI	CACGTG	1 cut(s)	7250
AcyI	GRCGYC	2 cut(s)	84, 798
AflII	CTTAAG	3 cut(s)	1016, 1315, 6938
AflIII	ACRYGT	5 cut(s)	1573, 3412, 4777, 5160, 7247
AgeI	ACCGGT	1 cut(s)	4218
AhdI	GACNNNNNGTC	1 cut(s)	2680
AjuI	GAANNNNNNNTTGG	4 cut(s)	2622, 2654, 2721, 2753
AleI	CACNNNNGTG	2 cut(s)	2564, 7248
Alw21I	GWGCWC	6 cut(s)	33, 367, 1213, 1833, 3794, 5861
AlwNI	CAGNNNCTG	4 cut(s)	440, 2432, 4060, 6683
ApaI	GGGCCC	1 cut(s)	3889
ArsI	GACNNNNNNTTYG	2 cut(s)	4778, 4810
AseI	ATTAAT	2 cut(s)	2277, 7949
AsiGI	ACCGGT	1 cut(s)	4218
Asp700I	GAANNNNTTC	8 cut(s)	1494, 2166, 2397, 2733, 4924, 6567, 6710, 7542
AspA2I	CCTAGG	1 cut(s)	6227
AspLEI	GCGC	2 cut(s)	110, 4428
AsuC2I	CCSGG	3 cut(s)	219, 5062, 7108
AsuII	TTCGAA	1 cut(s)	2659
AsuNHI	GCTAGC	3 cut(s)	2905, 3401, 7849
AvaII	GGWCC	7 cut(s)	714, 1596, 2713, 4216, 4753, 6224, 7494
AvrII	CCTAGG	1 cut(s)	6227
AxyI	CCTNAGG	2 cut(s)	936, 7094
BaeGI	GKGCMC	3 cut(s)	3889, 7242, 7462
BalI	TGGCCA	3 cut(s)	5, 2849, 4049
BamHI	GGATCC	1 cut(s)	6060
BanI	GGYRCC	3 cut(s)	2893, 7237, 7633
BanII	GRGCYC	5 cut(s)	33, 367, 1833, 3794, 3889
BauI	CACGAG	2 cut(s)	26, 4389
BbrPI	CACGTG	1 cut(s)	7250
BbsI	GAAGAC	3 cut(s)	1242, 2442, 2676
Bbv12I	GWGCWC	6 cut(s)	33, 367, 1213, 1833, 3794, 5861
BceAI	ACGGC	4 cut(s)	95, 2685, 7069, 7149
BcgI	CGANNNNNNTGC	2 cut(s)	3530, 3564
BciVI	GTATCC	1 cut(s)	1416
BclI	TGATCA	4 cut(s)	2818, 5308, 6766, 7336
BcnI	CCSGG	3 cut(s)	219, 5062, 7108
BfrI	CTTAAG	3 cut(s)	1016, 1315, 6938
BfuAI	ACCTGC	4 cut(s)	2864, 5262, 5523, 5988
BfuI	GTATCC	1 cut(s)	1416
BglII	AGATCT	3 cut(s)	415, 3136, 3803
BlnI	CCTAGG	1 cut(s)	6227
BmcAI	AGTACT	4 cut(s)	3283, 6180, 6522, 7728
Bme18I	GGWCC	7 cut(s)	714, 1596, 2713, 4216, 4753, 6224, 7494
BmeRI	GACNNNNNGTC	1 cut(s)	2680
BmrI	ACTGGG	6 cut(s)	582, 3564, 5077, 5629, 6081, 6230
BmtI	GCTAGC	3 cut(s)	2909, 3405, 7853
BmuI	ACTGGG	6 cut(s)	582, 3564, 5077, 5629, 6081, 6230
BoxI	GACNNNNGTC	2 cut(s)	2711, 7772
BpiI	GAAGAC	3 cut(s)	1242, 2442, 2676
BplI	GAGNNNNNCTC	2 cut(s)	3338, 3370
BpmI	CTGGAG	4 cut(s)	1096, 3323, 5875, 7386
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	2659
BpuEI	CTTGAG	7 cut(s)	1847, 3473, 5549, 5703, 5732, 5988, 7784
BpuMI	CCSGG	3 cut(s)	219, 5062, 7108
Bsa29I	ATCGAT	2 cut(s)	3186, 3640
BsaAI	YACGTR	4 cut(s)	2130, 4879, 5015, 7250
BsaBI	GATNNNNATC	3 cut(s)	375, 2817, 7991
BsaHI	GRCGYC	2 cut(s)	84, 798
BsaI	GGTCTC	3 cut(s)	1373, 3356, 4805
BsaWI	WCCGGW	1 cut(s)	4218
BsaXI	ACNNNNNCTCC	6 cut(s)	4208, 4238, 5561, 5591, 7875, 7905
Bse118I	RCCGGY	3 cut(s)	292, 3397, 4218
Bse21I	CCTNAGG	2 cut(s)	936, 7094
Bse3DI	GCAATG	7 cut(s)	917, 1356, 1924, 3218, 3563, 5391, 7134
Bse8I	GATNNNNATC	3 cut(s)	375, 2817, 7991
BseCI	ATCGAT	2 cut(s)	3186, 3640
BseJI	GATNNNNATC	3 cut(s)	375, 2817, 7991
BseMI	GCAATG	7 cut(s)	917, 1356, 1924, 3218, 3563, 5391, 7134
BseRI	GAGGAG	5 cut(s)	43, 54, 1009, 4511, 6035
BseSI	GKGCMC	3 cut(s)	3889, 7242, 7462
BseYI	CCCAGC	2 cut(s)	6862, 7156
BsgI	GTGCAG	7 cut(s)	945, 2293, 3398, 3915, 3996, 4356, 5270
Bsh1236I	CGCG	5 cut(s)	108, 158, 248, 1331, 6990
Bsh1285I	CGRYCG	1 cut(s)	268
BshNI	GGYRCC	3 cut(s)	2893, 7237, 7633
BshTI	ACCGGT	1 cut(s)	4218
BshVI	ATCGAT	2 cut(s)	3186, 3640
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	6 cut(s)	33, 367, 1213, 1833, 3794, 5861
BsiSI	CCGG	7 cut(s)	219, 293, 3398, 4219, 5061, 6604, 7108
BslFI	GGGAC	5 cut(s)	128, 700, 874, 4229, 6415
BsmBI	CGTCTC	2 cut(s)	3089, 5636
BsmFI	GGGAC	5 cut(s)	128, 700, 874, 4229, 6415
BsmI	GAATGC	5 cut(s)	1347, 2303, 3953, 4105, 4480
Bso31I	GGTCTC	3 cut(s)	1373, 3356, 4805
Bsp119I	TTCGAA	1 cut(s)	2659
Bsp120I	GGGCCC	1 cut(s)	3885
Bsp1286I	GDGCHC	9 cut(s)	33, 367, 1213, 1833, 3794, 3889, 5861, 7242, 7462
Bsp1407I	TGTACA	2 cut(s)	2206, 2953
Bsp19I	CCATGG	5 cut(s)	232, 897, 1592, 7497, 8006
BspDI	ATCGAT	2 cut(s)	3186, 3640
BspFNI	CGCG	5 cut(s)	108, 158, 248, 1331, 6990
BspHI	TCATGA	2 cut(s)	1530, 3670
BspMAI	CTGCAG	6 cut(s)	445, 4801, 5382, 5467, 6129, 7489
BspMI	ACCTGC	4 cut(s)	2864, 5262, 5523, 5988
BspOI	GCTAGC	3 cut(s)	2909, 3405, 7853
BspT104I	TTCGAA	1 cut(s)	2659
BspT107I	GGYRCC	3 cut(s)	2893, 7237, 7633
BspTI	CTTAAG	3 cut(s)	1016, 1315, 6938
BspTNI	GGTCTC	3 cut(s)	1373, 3356, 4805
BsrDI	GCAATG	7 cut(s)	917, 1356, 1924, 3218, 3563, 5391, 7134
BsrFI	RCCGGY	3 cut(s)	292, 3397, 4218
BsrGI	TGTACA	2 cut(s)	2206, 2953
BssAI	RCCGGY	3 cut(s)	292, 3397, 4218
BssNAI	GTATAC	1 cut(s)	1416
BssNI	GRCGYC	2 cut(s)	84, 798
BssSI	CACGAG	2 cut(s)	26, 4389
Bst1107I	GTATAC	1 cut(s)	1416
Bst2BI	CACGAG	2 cut(s)	26, 4389
Bst6I	CTCTTC	3 cut(s)	2157, 2529, 5550
BstACI	GRCGYC	2 cut(s)	84, 798
BstAFI	CTTAAG	3 cut(s)	1016, 1315, 6938
BstAPI	GCANNNNNTGC	3 cut(s)	1353, 5248, 7466
BstAUI	TGTACA	2 cut(s)	2206, 2953
BstBAI	YACGTR	4 cut(s)	2130, 4879, 5015, 7250
BstBI	TTCGAA	1 cut(s)	2659
BstDSI	CCRYGG	6 cut(s)	156, 232, 897, 1592, 7497, 8006
BstEII	GGTNACC	1 cut(s)	7523
BstENI	CCTNNNNNAGG	1 cut(s)	4831
BstFNI	CGCG	5 cut(s)	108, 158, 248, 1331, 6990
BstHHI	GCGC	2 cut(s)	110, 4428
BstMCI	CGRYCG	1 cut(s)	268
BstPAI	GACNNNNGTC	2 cut(s)	2711, 7772
BstPI	GGTNACC	1 cut(s)	7523
BstSLI	GKGCMC	3 cut(s)	3889, 7242, 7462
BstSNI	TACGTA	2 cut(s)	2130, 5015
BstUI	CGCG	5 cut(s)	108, 158, 248, 1331, 6990
BstV2I	GAAGAC	3 cut(s)	1242, 2442, 2676
BstXI	CCANNNNNNTGG	7 cut(s)	1486, 2098, 5655, 6071, 6725, 7250, 7449
BstZ17I	GTATAC	1 cut(s)	1416
Bsu15I	ATCGAT	2 cut(s)	3186, 3640
Bsu36I	CCTNAGG	2 cut(s)	936, 7094
BsuI	GTATCC	1 cut(s)	1416
BsuTUI	ATCGAT	2 cut(s)	3186, 3640
BtgI	CCRYGG	6 cut(s)	156, 232, 897, 1592, 7497, 8006
BtgZI	GCGATG	1 cut(s)	7005
BtsI	GCAGTG	2 cut(s)	1211, 4578
BveI	ACCTGC	4 cut(s)	2864, 5262, 5523, 5988
CaiI	CAGNNNCTG	4 cut(s)	440, 2432, 4060, 6683
CciI	TCATGA	2 cut(s)	1530, 3670
CfoI	GCGC	2 cut(s)	110, 4428
Cfr10I	RCCGGY	3 cut(s)	292, 3397, 4218
Cfr42I	CCGCGG	1 cut(s)	159
ClaI	ATCGAT	2 cut(s)	3186, 3640
CseI	GACGC	3 cut(s)	5337, 6188, 7052
CspAI	ACCGGT	1 cut(s)	4218
CspCI	CAANNNNNGTGG	2 cut(s)	6608, 6643
DraI	TTTAAA	5 cut(s)	483, 1287, 1959, 3940, 6273
DrdI	GACNNNNNNGTC	1 cut(s)	1387
DriI	GACNNNNNGTC	1 cut(s)	2680
DseDI	GACNNNNNNGTC	1 cut(s)	1387
EaeI	YGGCCR	3 cut(s)	3, 2847, 4047
Eam1104I	CTCTTC	3 cut(s)	2157, 2529, 5550
Eam1105I	GACNNNNNGTC	1 cut(s)	2680
EarI	CTCTTC	3 cut(s)	2157, 2529, 5550
EciI	GGCGGA	2 cut(s)	2183, 5961
Ecl136II	GAGCTC	4 cut(s)	31, 365, 1831, 3792
Eco105I	TACGTA	2 cut(s)	2130, 5015
Eco147I	AGGCCT	2 cut(s)	3920, 4085
Eco24I	GRGCYC	5 cut(s)	33, 367, 1833, 3794, 3889
Eco31I	GGTCTC	3 cut(s)	1373, 3356, 4805
Eco32I	GATATC	3 cut(s)	831, 1373, 6949
Eco47I	GGWCC	7 cut(s)	714, 1596, 2713, 4216, 4753, 6224, 7494
Eco53kI	GAGCTC	4 cut(s)	31, 365, 1831, 3792
Eco72I	CACGTG	1 cut(s)	7250
Eco81I	CCTNAGG	2 cut(s)	936, 7094
Eco91I	GGTNACC	1 cut(s)	7523
EcoICRI	GAGCTC	4 cut(s)	31, 365, 1831, 3792
EcoNI	CCTNNNNNAGG	1 cut(s)	4831
EcoO109I	RGGNCCY	4 cut(s)	3885, 3886, 4824, 6224
EcoO65I	GGTNACC	1 cut(s)	7523
EcoRI	GAATTC	1 cut(s)	1494
EcoRV	GATATC	3 cut(s)	831, 1373, 6949
EcoT22I	ATGCAT	7 cut(s)	376, 1257, 1400, 1649, 3318, 6476, 7740
EcoT38I	GRGCYC	5 cut(s)	33, 367, 1833, 3794, 3889
Esp3I	CGTCTC	2 cut(s)	3089, 5636
FaqI	GGGAC	5 cut(s)	128, 700, 874, 4229, 6415
FauI	CCCGC	2 cut(s)	3639, 5478
FauNDI	CATATG	2 cut(s)	3035, 6298
FbaI	TGATCA	4 cut(s)	2818, 5308, 6766, 7336
FblI	GTMKAC	3 cut(s)	1415, 2126, 4765
FriOI	GRGCYC	5 cut(s)	33, 367, 1833, 3794, 3889
GlaI	GCGC	2 cut(s)	109, 4427
GsaI	CCCAGC	2 cut(s)	6866, 7160
GsuI	CTGGAG	4 cut(s)	1096, 3323, 5875, 7386
HapII	CCGG	7 cut(s)	219, 293, 3398, 4219, 5061, 6604, 7108
HgaI	GACGC	3 cut(s)	5337, 6188, 7052
HhaI	GCGC	2 cut(s)	110, 4428
Hin1I	GRCGYC	2 cut(s)	84, 798
Hin6I	GCGC	2 cut(s)	108, 4426
HinP1I	GCGC	2 cut(s)	108, 4426
HincII	GTYRAC	4 cut(s)	2543, 2830, 3901, 6381
HindII	GTYRAC	4 cut(s)	2543, 2830, 3901, 6381
HindIII	AAGCTT	7 cut(s)	132, 635, 1586, 2598, 2792, 5097, 6006
HpaI	GTTAAC	1 cut(s)	6381
HpaII	CCGG	7 cut(s)	219, 293, 3398, 4219, 5061, 6604, 7108
Hpy99I	CGWCG	6 cut(s)	86, 89, 143, 7055, 7170, 7947
HpyCH4IV	ACGT	9 cut(s)	84, 138, 798, 2129, 4659, 4878, 5014, 5826, 7249
HpySE526I	ACGT	9 cut(s)	84, 138, 798, 2129, 4659, 4878, 5014, 5826, 7249
Hsp92I	GRCGYC	2 cut(s)	84, 798
HspAI	GCGC	2 cut(s)	108, 4426
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Ksp22I	TGATCA	4 cut(s)	2818, 5308, 6766, 7336
KspAI	GTTAAC	1 cut(s)	6381
KspI	CCGCGG	1 cut(s)	159
MaeII	ACGT	9 cut(s)	84, 138, 798, 2129, 4659, 4878, 5014, 5826, 7249
MfeI	CAATTG	3 cut(s)	1628, 5880, 5940
MhlI	GDGCHC	9 cut(s)	33, 367, 1213, 1833, 3794, 3889, 5861, 7242, 7462
MlsI	TGGCCA	3 cut(s)	5, 2849, 4049
MluNI	TGGCCA	3 cut(s)	5, 2849, 4049
Mox20I	TGGCCA	3 cut(s)	5, 2849, 4049
Mph1103I	ATGCAT	7 cut(s)	376, 1257, 1400, 1649, 3318, 6476, 7740
MroNI	GCCGGC	1 cut(s)	292
MroXI	GAANNNNTTC	8 cut(s)	1494, 2166, 2397, 2733, 4924, 6567, 6710, 7542
MscI	TGGCCA	3 cut(s)	5, 2849, 4049
Msp20I	TGGCCA	3 cut(s)	5, 2849, 4049
MspCI	CTTAAG	3 cut(s)	1016, 1315, 6938
MspI	CCGG	7 cut(s)	219, 293, 3398, 4219, 5061, 6604, 7108
MunI	CAATTG	3 cut(s)	1628, 5880, 5940
Mva1269I	GAATGC	5 cut(s)	1347, 2303, 3953, 4105, 4480
MvnI	CGCG	5 cut(s)	108, 158, 248, 1331, 6990
NaeI	GCCGGC	1 cut(s)	294
NciI	CCSGG	3 cut(s)	219, 5062, 7108
NcoI	CCATGG	5 cut(s)	232, 897, 1592, 7497, 8006
NdeI	CATATG	2 cut(s)	3035, 6298
NgoMIV	GCCGGC	1 cut(s)	292
NheI	GCTAGC	3 cut(s)	2905, 3401, 7849
NmeAIII	GCCGAG	1 cut(s)	2222
NmuCI	GTSAC	8 cut(s)	475, 794, 1389, 1736, 2027, 5165, 5182, 7523
NsiI	ATGCAT	7 cut(s)	376, 1257, 1400, 1649, 3318, 6476, 7740
NspV	TTCGAA	1 cut(s)	2659
OliI	CACNNNNGTG	2 cut(s)	2564, 7248
PaeI	GCATGC	4 cut(s)	1668, 3320, 5242, 6478
PagI	TCATGA	2 cut(s)	1530, 3670
PaqCI	CACCTGC	2 cut(s)	5262, 5523
PasI	CCCWGGG	1 cut(s)	3889
PceI	AGGCCT	2 cut(s)	3920, 4085
PciI	ACATGT	4 cut(s)	1573, 3412, 4777, 5160
PctI	GAATGC	5 cut(s)	1347, 2303, 3953, 4105, 4480
PdiI	GCCGGC	1 cut(s)	294
PdmI	GAANNNNTTC	8 cut(s)	1494, 2166, 2397, 2733, 4924, 6567, 6710, 7542
PflFI	GACNNNGTC	1 cut(s)	1980
PflMI	CCANNNNNTGG	1 cut(s)	6460
PfoI	TCCNGGA	2 cut(s)	217, 6665
PinAI	ACCGGT	1 cut(s)	4218
PmaCI	CACGTG	1 cut(s)	7250
PmlI	CACGTG	1 cut(s)	7250
Ppu21I	YACGTR	4 cut(s)	2130, 4879, 5015, 7250
PpuMI	RGGWCCY	1 cut(s)	6224
PscI	ACATGT	4 cut(s)	1573, 3412, 4777, 5160
PshAI	GACNNNNGTC	2 cut(s)	2711, 7772
PshBI	ATTAAT	2 cut(s)	2277, 7949
PsiI	TTATAA	1 cut(s)	1748
Psp124BI	GAGCTC	4 cut(s)	33, 367, 1833, 3794
Psp1406I	AACGTT	1 cut(s)	5826
Psp5II	RGGWCCY	1 cut(s)	6224
PspCI	CACGTG	1 cut(s)	7250
PspEI	GGTNACC	1 cut(s)	7523
PspFI	CCCAGC	2 cut(s)	6862, 7156
PspOMI	GGGCCC	1 cut(s)	3885
PspPPI	RGGWCCY	1 cut(s)	6224
PstI	CTGCAG	6 cut(s)	445, 4801, 5382, 5467, 6129, 7489
PstNI	CAGNNNCTG	4 cut(s)	440, 2432, 4060, 6683
PsyI	GACNNNGTC	1 cut(s)	1980
PvuII	CAGCTG	7 cut(s)	959, 2474, 3382, 4040, 4971, 6680, 7445
SacI	GAGCTC	4 cut(s)	33, 367, 1833, 3794
SacII	CCGCGG	1 cut(s)	159
ScaI	AGTACT	4 cut(s)	3283, 6180, 6522, 7728
SduI	GDGCHC	9 cut(s)	33, 367, 1213, 1833, 3794, 3889, 5861, 7242, 7462
Sfr303I	CCGCGG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	2659
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	7 cut(s)	714, 1596, 2713, 4216, 4753, 6224, 7494
SmiI	ATTTAAAT	1 cut(s)	6273
SnaBI	TACGTA	2 cut(s)	2130, 5015
SphI	GCATGC	4 cut(s)	1668, 3320, 5242, 6478
SseBI	AGGCCT	2 cut(s)	3920, 4085
SspI	AATATT	2 cut(s)	1189, 6167
SstI	GAGCTC	4 cut(s)	33, 367, 1833, 3794
StuI	AGGCCT	2 cut(s)	3920, 4085
SwaI	ATTTAAAT	1 cut(s)	6273
TaiI	ACGT	9 cut(s)	87, 141, 801, 2132, 4662, 4881, 5017, 5829, 7252
TaqII	GACCGA	3 cut(s)	254, 2046, 7542
TatI	WGTACW	8 cut(s)	1457, 2206, 2953, 3281, 3475, 6178, 6520, 7726
TauI	GCSGC	3 cut(s)	248, 3856, 6862
TseFI	GTSAC	8 cut(s)	475, 794, 1389, 1736, 2027, 5165, 5182, 7523
Tsp45I	GTSAC	8 cut(s)	475, 794, 1389, 1736, 2027, 5165, 5182, 7523
TspGWI	ACGGA	7 cut(s)	290, 1060, 1920, 4667, 6718, 7056, 7477
Tth111I	GACNNNGTC	1 cut(s)	1980
Van91I	CCANNNNNTGG	1 cut(s)	6460
Vha464I	CTTAAG	3 cut(s)	1016, 1315, 6938
VpaK11BI	GGWCC	7 cut(s)	714, 1596, 2713, 4216, 4753, 6224, 7494
VspI	ATTAAT	2 cut(s)	2277, 7949
XagI	CCTNNNNNAGG	1 cut(s)	4831
XbaI	TCTAGA	1 cut(s)	4265
XcmI	CCANNNNNNNNNTGG	3 cut(s)	5962, 6507, 6725
XmaJI	CCTAGG	1 cut(s)	6227
XmiI	GTMKAC	3 cut(s)	1415, 2126, 4765
XmnI	GAANNNNTTC	8 cut(s)	1494, 2166, 2397, 2733, 4924, 6567, 6710, 7542
ZraI	GACGTC	2 cut(s)	85, 799
ZrmI	AGTACT	4 cut(s)	3283, 6180, 6522, 7728
Zsp2I	ATGCAT	7 cut(s)	376, 1257, 1400, 1649, 3318, 6476, 7740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.