pycom10g11290

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008369
Physical Location & Seq
Forward (+)
14792105 .. 14793871
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
ATGCCGAAAAAGATGGGTGTGAACAGCAAGGCGGAGGCCGCCAAGGCTCGGAAGAGCTCCACCGAAGCCGAGCGCAAGGAGCGCGAGACTCGCGAGAAGGACGAGCAGTACTGGCGCGAGGCGGAGGGCAGCAAGTCCCGCGCGGCCAAGAAGCGCGAGGAAGAAGCCGAGAAGCGGGCGGAGGCCGCCGCGCGGAAAGCCGAGGCCCGCCGATTGGCGGAGCTGGAGGAGAAGGAGCTCGAAAAGGCGGCAAAGAAGCCCGATAAGAAGGTCGGCCGAGTCACGATCCCGGTTCCTAAGGTGACTGAGGCCGAGCTGAGACGGCGGAAAGAGGAGGAGCAGGCGGCGTTGGAGAAGAAATCGGATGAGGTGAAGAAGAAGCAGAGCCGTACGGCCGAGGAGGAGGAGTATGAGAGGATGGTGGTGGTAGAGAATAAGAATCGGGATGATTCGTTTATTGAGGCTAGGTCGGTGGAGGAGGCGGTTGCGAAGATGTCCGTGTCGGAGAGCTTGCCGGTGGATCGGCACCCGGAGAGGAGGCTCAAGGCTTCGTTTAAGGCTTTTGAAGAAGCTGAGCTCCCGAGGCTGAAGGAAGAGAAACCAGGTCTTACTCACAACCAATACAAGGATATGATATGGAAGCTTTGGAAGAAATCTCCGGATAATCCTCTAAATCAGGTTGAGTTTCGTCTCAGATATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ccdc124

Protein Analysis

235

Amino Acids

27.39

Weight (kDa)

9.34

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ccdc124 PF06244 147 - 226 3.1e-33 Coiled-coil domain-containing protein 124 /Oxs1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 525
AccII CGCG 8 cut(s) 84, 93, 117, 141, 143, 156, 191, 193
AccIII TCCGGA 1 cut(s) 658
AclWI GGATC 2 cut(s) 280, 528
AcoI YGGCCR 3 cut(s) 144, 274, 393
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 2 cut(s) 110, 391
AfiI CCNNNNNNNGG 6 cut(s) 48, 174, 192, 214, 217, 625
AgsI TTSAA 1 cut(s) 566
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 8 cut(s) 57, 223, 238, 316, 510, 572, 577, 643
AluI AGCT 8 cut(s) 57, 223, 238, 316, 510, 572, 577, 643
Alw21I GWGCWC 3 cut(s) 59, 240, 579
Alw26I GTCTC 3 cut(s) 80, 313, 695
AlwI GGATC 2 cut(s) 280, 528
Ama87I CYCGRG 1 cut(s) 580
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 7 cut(s) 36, 144, 183, 204, 274, 309, 393
ApeKI GCWGC 1 cut(s) 129
AspLEI GCGC 6 cut(s) 75, 84, 117, 143, 156, 193
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 2 cut(s) 290, 530
AsuHPI GGTGA 2 cut(s) 313, 382
AvaI CYCGRG 1 cut(s) 580
AxyI CCTNAGG 1 cut(s) 297
BanI GGYRCC 1 cut(s) 525
BanII GRGCYC 3 cut(s) 59, 240, 579
Bbv12I GWGCWC 3 cut(s) 59, 240, 579
BbvI GCAGC 1 cut(s) 141
BccI CCATC 2 cut(s) 7, 412
BceAI ACGGC 3 cut(s) 338, 372, 408
BciT130I CCWGG 1 cut(s) 603
BcnI CCSGG 2 cut(s) 290, 530
BcoDI GTCTC 3 cut(s) 80, 313, 695
BfaI CTAG 1 cut(s) 465
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 7 cut(s) 39, 130, 144, 186, 189, 249, 345
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 7 cut(s) 40, 131, 145, 187, 190, 250, 346
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 3 cut(s) 290, 530, 603
BmeT110I CYCGRG 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 294, 527
BmrFI CCNGG 3 cut(s) 290, 530, 603
BpmI CTGGAG 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 2 cut(s) 290, 530
BsaJI CCNNGG 4 cut(s) 42, 201, 396, 581
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 174, 192, 214, 217, 625
Bse118I RCCGGY 1 cut(s) 514
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 4 cut(s) 42, 201, 396, 581
BseGI GGATG 3 cut(s) 370, 423, 451
BseLI CCNNNNNNNGG 6 cut(s) 48, 174, 192, 214, 217, 625
BseMII CTCAG 3 cut(s) 297, 308, 564
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 8 cut(s) 242, 347, 350, 413, 416, 419, 491, 550
BseX3I CGGCCG 2 cut(s) 274, 393
BseXI GCAGC 1 cut(s) 141
Bsh1236I CGCG 8 cut(s) 84, 93, 117, 141, 143, 156, 191, 193
Bsh1285I CGRYCG 2 cut(s) 277, 396
BshFI GGCC 7 cut(s) 38, 146, 185, 206, 276, 311, 395
BshNI GGYRCC 1 cut(s) 525
BsiEI CGRYCG 2 cut(s) 277, 396
BsiHKAI GWGCWC 3 cut(s) 59, 240, 579
BsiHKCI CYCGRG 1 cut(s) 580
BsiSI CCGG 4 cut(s) 290, 515, 530, 659
BsiWI CGTACG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 6 cut(s) 48, 174, 192, 214, 217, 625
BsmAI GTCTC 3 cut(s) 80, 313, 695
BsmBI CGTCTC 2 cut(s) 313, 695
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 7 cut(s) 38, 146, 185, 206, 276, 311, 395
BsoBI CYCGRG 1 cut(s) 580
Bsp1286I GDGCHC 3 cut(s) 59, 240, 579
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 2 cut(s) 285, 520
Bsp1720I GCTNAGC 1 cut(s) 573
Bsp68I TCGCGA 1 cut(s) 93
BspANI GGCC 7 cut(s) 38, 146, 185, 206, 276, 311, 395
BspCNI CTCAG 4 cut(s) 298, 309, 565, 705
BspEI TCCGGA 1 cut(s) 658
BspFNI CGCG 8 cut(s) 84, 93, 117, 141, 143, 156, 191, 193
BspLI GGNNCC 2 cut(s) 294, 527
BspPI GGATC 2 cut(s) 280, 528
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 514
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 4 cut(s) 42, 201, 396, 581
BssMI GATC 2 cut(s) 285, 520
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 603
Bst6I CTCTTC 2 cut(s) 47, 588
BstC8I GCNNGC 4 cut(s) 177, 208, 342, 512
BstDEI CTNAG 5 cut(s) 297, 306, 317, 573, 692
BstF5I GGATG 3 cut(s) 370, 423, 451
BstFNI CGCG 8 cut(s) 84, 93, 117, 141, 143, 156, 191, 193
BstHHI GCGC 6 cut(s) 75, 84, 117, 143, 156, 193
BstKTI GATC 2 cut(s) 288, 523
BstMAI GTCTC 3 cut(s) 80, 313, 695
BstMBI GATC 2 cut(s) 285, 520
BstMCI CGRYCG 2 cut(s) 277, 396
BstNI CCWGG 1 cut(s) 603
BstSCI CCNGG 3 cut(s) 288, 528, 601
BstUI CGCG 8 cut(s) 84, 93, 117, 141, 143, 156, 191, 193
BstV1I GCAGC 1 cut(s) 141
BstZI CGGCCG 2 cut(s) 274, 393
Bsu36I CCTNAGG 1 cut(s) 297
BsuRI GGCC 7 cut(s) 38, 146, 185, 206, 276, 311, 395
BtsCI GGATG 3 cut(s) 370, 423, 451
BtuMI TCGCGA 1 cut(s) 93
Cac8I GCNNGC 4 cut(s) 177, 208, 342, 512
CfoI GCGC 6 cut(s) 75, 84, 117, 143, 156, 193
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 205
CsiI ACCWGGT 1 cut(s) 601
Csp6I GTAC 2 cut(s) 109, 390
CviQI GTAC 2 cut(s) 109, 390
DdeI CTNAG 5 cut(s) 297, 306, 317, 573, 692
DpnI GATC 2 cut(s) 287, 522
DpnII GATC 2 cut(s) 285, 520
EaeI YGGCCR 3 cut(s) 144, 274, 393
EagI CGGCCG 2 cut(s) 274, 393
Eam1104I CTCTTC 2 cut(s) 47, 588
EarI CTCTTC 2 cut(s) 47, 588
EciI GGCGGA 5 cut(s) 47, 137, 194, 233, 340
Ecl136II GAGCTC 3 cut(s) 57, 238, 577
EclXI CGGCCG 2 cut(s) 274, 393
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 3 cut(s) 59, 240, 579
Eco52I CGGCCG 2 cut(s) 274, 393
Eco53kI GAGCTC 3 cut(s) 57, 238, 577
Eco57I CTGAAG 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 580
EcoICRI GAGCTC 3 cut(s) 57, 238, 577
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 3 cut(s) 59, 240, 579
ErhI CCWWGG 1 cut(s) 42
Esp3I CGTCTC 2 cut(s) 313, 695
FaiI YATR 6 cut(s) 411, 632, 637, 699, 701, 703
FaqI GGGAC 1 cut(s) 121
FauI CCCGC 3 cut(s) 146, 168, 215
Fnu4HI GCNGC 7 cut(s) 39, 130, 144, 186, 189, 249, 345
FokI GGATG 3 cut(s) 377, 430, 458
FriOI GRGCYC 3 cut(s) 59, 240, 579
Fsp4HI GCNGC 7 cut(s) 39, 130, 144, 186, 189, 249, 345
FspBI CTAG 1 cut(s) 465
GlaI GCGC 6 cut(s) 74, 83, 116, 142, 155, 192
GluI GCNGC 7 cut(s) 39, 130, 144, 186, 189, 249, 345
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 7 cut(s) 38, 146, 185, 206, 276, 311, 395
HapII CCGG 4 cut(s) 290, 515, 530, 659
HhaI GCGC 6 cut(s) 75, 84, 117, 143, 156, 193
Hin6I GCGC 6 cut(s) 73, 82, 115, 141, 154, 191
HinP1I GCGC 6 cut(s) 73, 82, 115, 141, 154, 191
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 4 cut(s) 88, 279, 439, 449
HpaII CCGG 4 cut(s) 290, 515, 530, 659
HphI GGTGA 2 cut(s) 313, 382
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 51, 364, 505, 695
Hpy188III TCNNGA 5 cut(s) 92, 283, 443, 580, 659
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 91, 226, 262, 583
HpyF3I CTNAG 5 cut(s) 297, 306, 317, 573, 692
HspAI GCGC 6 cut(s) 73, 82, 115, 141, 154, 191
Kpn2I TCCGGA 1 cut(s) 658
Kzo9I GATC 2 cut(s) 285, 520
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 6 cut(s) 62, 79, 220, 235, 337, 582
Lsp1109I GCAGC 1 cut(s) 141
MabI ACCWGGT 1 cut(s) 601
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 280, 301
MalI GATC 2 cut(s) 287, 522
MboI GATC 2 cut(s) 285, 520
MboII GAAGA 9 cut(s) 64, 173, 367, 385, 388, 502, 578, 605, 661
MhlI GDGCHC 3 cut(s) 59, 240, 579
MlyI GAGTC 2 cut(s) 82, 288
MmeI TCCRAC 2 cut(s) 330, 483
MroI TCCGGA 1 cut(s) 658
MseI TTAA 1 cut(s) 555
MspI CCGG 4 cut(s) 290, 515, 530, 659
MspR9I CCNGG 3 cut(s) 290, 530, 603
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 8 cut(s) 84, 93, 117, 141, 143, 156, 191, 193
NciI CCSGG 2 cut(s) 290, 530
NdeII GATC 2 cut(s) 285, 520
NlaIV GGNNCC 2 cut(s) 294, 527
NmeAIII GCCGAG 6 cut(s) 94, 193, 226, 302, 337, 421
NmuCI GTSAC 2 cut(s) 280, 301
NruI TCGCGA 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 439, 449
Pfl23II CGTACG 1 cut(s) 389
PkrI GCNGC 7 cut(s) 40, 131, 145, 187, 190, 250, 346
PleI GAGTC 2 cut(s) 82, 287
PpsI GAGTC 2 cut(s) 82, 287
Psp124BI GAGCTC 3 cut(s) 59, 240, 579
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspLI CGTACG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 294, 527
PspPI GGNCC 1 cut(s) 205
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 2 cut(s) 110, 391
RsaNI GTAC 2 cut(s) 109, 390
SacI GAGCTC 3 cut(s) 59, 240, 579
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 7 cut(s) 39, 130, 144, 186, 189, 249, 345
Sau3AI GATC 2 cut(s) 285, 520
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 110
SchI GAGTC 2 cut(s) 82, 288
ScrFI CCNGG 3 cut(s) 290, 530, 603
SduI GDGCHC 3 cut(s) 59, 240, 579
SexAI ACCWGGT 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 3 cut(s) 59, 240, 579
StyD4I CCNGG 3 cut(s) 288, 528, 601
StyI CCWWGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 240
TatI WGTACW 1 cut(s) 108
TauI GCSGC 6 cut(s) 41, 146, 188, 191, 251, 347
TfiI GAWTC 2 cut(s) 439, 449
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TseFI GTSAC 2 cut(s) 280, 301
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 2 cut(s) 280, 301
TspGWI ACGGA 1 cut(s) 487
XspI CTAG 1 cut(s) 465
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.