pycom10g11810

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011477
Physical Location & Seq
Reverse (-)
15377665 .. 15381200
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
ATGTATTGCTTTGGAAGGTACTTGGTTGCATGCTTGGGTGGGGAAGAGAGGACTATTGAGTTTATGGAAAGGGAAGGACGTGCAAGTTCTAAGATTCCCCTATTAGAACACAGTTCTGAAAGGGGAACCGTTAAGCATCCTTTTCCAGTGAACTATATCTTGAAACCATGGAAACTTGGTCAATGGTTTTACCAAGTTGTCAAATTCGGAATTGTTCAGTATATGTTAATTAAGTCTCTCAGTGCTATTGTAGCAGTTATCCTTGAAGCTTTTGATGTATATTGCGAAGGTGACTTTAAATGGGGATGTGGGTATCCTTATATTGCAGTGGTTCTAAATTTTAGTCAGTCATGGGCTTTGTACTGTCTTGTTCAGTTTTACACTGTTACAAAAGATGAACTAGCTCGCATAAAACCATTAGCCAAGTTTTTGACATTTAAATCAATTGTGTTTTTGACATGGTGGCAAGGTGTGGCAATTGCTCTTCTCTATGCCTTGGGTTTGTTCAAAAGCCCTATAGCTCAAGGATTGCAGTTTAAGTCAAGTGTTCAAGACTTCATCATTTGTATAGAGATGGGCATTGCCTCTGTTGTTCACCTATATGTGTTTCCTGCCAAACCTTACGAAATGATGGGAGATCGTTTTCCTGGAACTGTCTCAGTTCTTGGAGACTATGTATCGGCTGACTGTCCTTTGGATCCAGAGGAGGTTAGGGACAGTGAACGCCCCACAAAGCTACGCCTCCCCACTCCTGACATTGATGTCAAGAGCGGCATGACCATCAGAGAAAGTGTTCGAGATGTTTTCATTGGTGGCGGGGAATATATTGTGCAAGATGTGAAGTTCACAGTTACACAGGCAGTAGAGCCAGTGGAGAAGGGGTTCACCAGGTTCAATGAGAAGCTACACAAGATCTCCGAAAACATTAAGAAACATGACAAGGAGAAACGAAAGACGAGGGATGACAGTTGTATATCCACATCACCTACACGGAAGGTGATTCGTGGGATAGATGACCCTCTCTTGAACGGAAGCATGAGTGACAGTGGGGTTGCAAGGGCAAATAGGCATCGCCGCAAATCTGGATATACCAGTGCAGAAAGCGGTGGAGAGAGTGGTAGTGATCAGAGTTATGGTGGGTTTCAGGTCAGAGGCCGTAGGTGGGTAACCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

393

Amino Acids

44.33

Weight (kDa)

8.82

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 1 - 208 2.9e-64 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011477)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38360
fragaria_vesca FvH4_2g16560 FvH4_2g16560
malus_domestica MD05G1133900.v1.1 MD10G1138900.v1.1
prunus_persica Prupe.8G177700_v2.0.a1
pyrus_communis pycom05g13070 pycom10g11810
rosa_chinensis RchiOBHm_Chr6g0280631
rosa_laevigata RLG00000013042
rosa_multiflora Rmu_sc0000976.1_g000001
rosa_roxburghii Rroxscaffold_7G00187860
rosa_rugosa Rorug06G0133000 Rorug06G0133100 Rorug06G0133200
rosa_samantha Rh6AG245600 Rh6BG248000 Rh6CG249400 Rh6DG240600
rosa_wichuraiana Rw6G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 771
AciI CCGC 4 cut(s) 771, 816, 1075, 1104
AclWI GGATC 2 cut(s) 692, 705
AcsI RAATTY 2 cut(s) 203, 337
AfaI GTAC 2 cut(s) 20, 362
AfiI CCNNNNNNNGG 1 cut(s) 1162
AgsI TTSAA 6 cut(s) 163, 266, 508, 551, 895, 1027
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 646, 887
AloI GAACNNNNNNTCC 2 cut(s) 866, 898
AluBI AGCT 5 cut(s) 269, 404, 521, 736, 904
AluI AGCT 5 cut(s) 269, 404, 521, 736, 904
Alw26I GTCTC 3 cut(s) 240, 661, 663
AlwI GGATC 2 cut(s) 692, 705
AoxI GGCC 1 cut(s) 1153
ApoI RAATTY 2 cut(s) 203, 337
Asp700I GAANNNNTTC 2 cut(s) 792, 881
AsuHPI GGTGA 5 cut(s) 302, 587, 877, 975, 1009
BamHI GGATCC 1 cut(s) 697
BccI CCATC 3 cut(s) 568, 625, 788
BceAI ACGGC 1 cut(s) 1140
BciT130I CCWGG 2 cut(s) 648, 889
BciVI GTATCC 1 cut(s) 324
BclI TGATCA 1 cut(s) 1123
BcoDI GTCTC 3 cut(s) 240, 661, 663
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 516
BfuI GTATCC 1 cut(s) 324
BglII AGATCT 1 cut(s) 912
BisI GCNGC 2 cut(s) 772, 1075
BlsI GCNGC 2 cut(s) 773, 1076
Bme1390I CCNGG 2 cut(s) 648, 889
BmgBI CACGTC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 127, 699
BmrFI CCNGG 2 cut(s) 648, 889
BmsI GCATC 2 cut(s) 145, 1078
BpuEI CTTGAG 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 167, 495
BsaXI ACNNNNNCTCC 6 cut(s) 660, 690, 866, 896, 899, 929
Bsc4I CCNNNNNNNGG 1 cut(s) 1162
Bse1I ACTGG 3 cut(s) 146, 869, 1092
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 648, 889
BseDI CCNNGG 2 cut(s) 167, 495
BseGI GGATG 3 cut(s) 136, 311, 967
BseLI CCNNNNNNNGG 1 cut(s) 1162
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 2 cut(s) 253, 672
BseNI ACTGG 3 cut(s) 146, 869, 1092
BseRI GAGGAG 1 cut(s) 719
BsgI GTGCAG 1 cut(s) 1116
BshFI GGCC 1 cut(s) 1155
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 1 cut(s) 1162
BsmAI GTCTC 3 cut(s) 240, 661, 663
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 1 cut(s) 1155
Bsp143I GATC 4 cut(s) 637, 697, 912, 1123
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 4 cut(s) 771, 816, 1075, 1104
BspANI GGCC 1 cut(s) 1155
BspCNI CTCAG 2 cut(s) 252, 671
BspLI GGNNCC 2 cut(s) 127, 699
BspPI GGATC 2 cut(s) 692, 705
BspQI GCTCTTC 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 3 cut(s) 146, 869, 1092
BssECI CCNNGG 2 cut(s) 167, 495
BssMI GATC 4 cut(s) 637, 697, 912, 1123
BssT1I CCWWGG 2 cut(s) 167, 495
Bst2UI CCWGG 2 cut(s) 648, 889
Bst6I CTCTTC 2 cut(s) 39, 489
BstC8I GCNNGC 2 cut(s) 31, 406
BstDEI CTNAG 3 cut(s) 90, 239, 658
BstDSI CCRYGG 1 cut(s) 167
BstEII GGTNACC 1 cut(s) 1165
BstF5I GGATG 3 cut(s) 136, 311, 967
BstKTI GATC 4 cut(s) 640, 700, 915, 1126
BstMAI GTCTC 3 cut(s) 240, 661, 663
BstMBI GATC 4 cut(s) 637, 697, 912, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 648, 889
BstNSI RCATGY 1 cut(s) 33
BstPI GGTNACC 1 cut(s) 1165
BstSCI CCNGG 2 cut(s) 646, 887
BstSFI CTRYAG 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 697, 912
BstYI RGATCY 2 cut(s) 697, 912
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 1 cut(s) 1155
BtgI CCRYGG 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 1055
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 3 cut(s) 136, 311, 967
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 8 cut(s) 153, 247, 333, 381, 724, 876, 1051, 1099
Cac8I GCNNGC 2 cut(s) 31, 406
CsiI ACCWGGT 1 cut(s) 887
Csp6I GTAC 2 cut(s) 19, 361
CviAII CATG 7 cut(s) 30, 168, 351, 459, 775, 935, 1036
CviQI GTAC 2 cut(s) 19, 361
DdeI CTNAG 3 cut(s) 90, 239, 658
DpnI GATC 4 cut(s) 639, 699, 914, 1125
DpnII GATC 4 cut(s) 637, 697, 912, 1123
DraI TTTAAA 2 cut(s) 298, 439
DrdI GACNNNNNNGTC 1 cut(s) 761
DseDI GACNNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 2 cut(s) 39, 489
EarI CTCTTC 2 cut(s) 39, 489
Eco130I CCWWGG 2 cut(s) 167, 495
Eco91I GGTNACC 1 cut(s) 1165
EcoO65I GGTNACC 1 cut(s) 1165
EcoRII CCWGG 2 cut(s) 646, 887
EcoT14I CCWWGG 2 cut(s) 167, 495
ErhI CCWWGG 2 cut(s) 167, 495
FaeI CATG 7 cut(s) 33, 171, 354, 462, 778, 938, 1039
FaqI GGGAC 1 cut(s) 728
FatI CATG 7 cut(s) 29, 167, 350, 458, 774, 934, 1035
FauI CCCGC 1 cut(s) 809
FbaI TGATCA 1 cut(s) 1123
Fnu4HI GCNGC 2 cut(s) 772, 1075
FokI GGATG 3 cut(s) 123, 318, 974
Fsp4HI GCNGC 2 cut(s) 772, 1075
FspBI CTAG 1 cut(s) 401
GluI GCNGC 2 cut(s) 772, 1075
HaeIII GGCC 1 cut(s) 1155
Hin1II CATG 7 cut(s) 33, 171, 354, 462, 778, 938, 1039
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 2 cut(s) 94, 1000
HphI GGTGA 5 cut(s) 302, 587, 877, 975, 1009
Hpy166II GTNNAC 5 cut(s) 151, 595, 722, 846, 885
Hpy188I TCNGA 6 cut(s) 118, 209, 785, 919, 1128, 1151
Hpy188III TCNNGA 8 cut(s) 160, 551, 701, 752, 766, 797, 1024, 1083
Hpy8I GTNNAC 5 cut(s) 151, 595, 722, 846, 885
HpyAV CCTTC 5 cut(s) 9, 68, 281, 871, 988
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 7 cut(s) 29, 83, 326, 532, 832, 1055, 1097
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 90, 239, 658
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 7 cut(s) 33, 171, 354, 462, 778, 938, 1039
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 4 cut(s) 637, 697, 912, 1123
LguI GCTCTTC 1 cut(s) 489
LweI GCATC 2 cut(s) 145, 1078
MabI ACCWGGT 1 cut(s) 887
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 5 cut(s) 290, 385, 850, 1040, 1165
MalI GATC 4 cut(s) 639, 699, 914, 1125
MbiI CCGCTC 1 cut(s) 771
MboI GATC 4 cut(s) 637, 697, 912, 1123
MboII GAAGA 2 cut(s) 56, 476
MfeI CAATTG 2 cut(s) 444, 477
MflI RGATCY 2 cut(s) 697, 912
MluCI AATT 6 cut(s) 203, 210, 228, 337, 444, 477
MnlI CCTC 8 cut(s) 42, 595, 697, 700, 752, 951, 1029, 1145
MroXI GAANNNNTTC 2 cut(s) 792, 881
MseI TTAA 7 cut(s) 132, 227, 231, 297, 438, 537, 927
MslI CAYNNNNRTG 1 cut(s) 600
MspR9I CCNGG 2 cut(s) 648, 889
MunI CAATTG 2 cut(s) 444, 477
MvaI CCWGG 2 cut(s) 648, 889
MwoI GCNNNNNNNGC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 167
NdeII GATC 4 cut(s) 637, 697, 912, 1123
NlaIII CATG 7 cut(s) 33, 171, 354, 462, 778, 938, 1039
NlaIV GGNNCC 2 cut(s) 127, 699
NmuCI GTSAC 2 cut(s) 290, 1040
NspI RCATGY 1 cut(s) 33
PacI TTAATTAA 1 cut(s) 231
PaeI GCATGC 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 489
PdmI GAANNNNTTC 2 cut(s) 792, 881
PfeI GAWTC 2 cut(s) 94, 1000
PfoI TCCNGGA 1 cut(s) 646
PkrI GCNGC 2 cut(s) 773, 1076
Psp6I CCWGG 2 cut(s) 646, 887
PspEI GGTNACC 1 cut(s) 1165
PspGI CCWGG 2 cut(s) 646, 887
PspN4I GGNNCC 2 cut(s) 127, 699
PsuI RGATCY 2 cut(s) 697, 912
RsaI GTAC 2 cut(s) 20, 362
RsaNI GTAC 2 cut(s) 19, 361
RseI CAYNNNNRTG 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 7 cut(s) 132, 227, 231, 297, 438, 537, 927
SatI GCNGC 2 cut(s) 772, 1075
Sau3AI GATC 4 cut(s) 637, 697, 912, 1123
ScrFI CCNGG 2 cut(s) 648, 889
SexAI ACCWGGT 1 cut(s) 887
SfaNI GCATC 2 cut(s) 145, 1078
SfcI CTRYAG 1 cut(s) 516
SmiI ATTTAAAT 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
SphI GCATGC 1 cut(s) 33
Sse9I AATT 6 cut(s) 203, 210, 228, 337, 444, 477
SsiI CCGC 4 cut(s) 771, 816, 1075, 1104
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 646, 887
StyI CCWWGG 2 cut(s) 167, 495
SwaI ATTTAAAT 1 cut(s) 439
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 796
TasI AATT 6 cut(s) 203, 210, 228, 337, 444, 477
TatI WGTACW 1 cut(s) 360
TauI GCSGC 2 cut(s) 774, 1077
TfiI GAWTC 2 cut(s) 94, 1000
Tru1I TTAA 7 cut(s) 132, 227, 231, 297, 438, 537, 927
Tru9I TTAA 7 cut(s) 132, 227, 231, 297, 438, 537, 927
TscAI CASTG 8 cut(s) 153, 247, 333, 388, 724, 876, 1051, 1099
TseFI GTSAC 2 cut(s) 290, 1040
Tsp45I GTSAC 2 cut(s) 290, 1040
TspDTI ATGAA 3 cut(s) 411, 547, 796
TspGWI ACGGA 2 cut(s) 1006, 1044
TspRI CASTG 8 cut(s) 153, 247, 333, 388, 724, 876, 1051, 1099
XapI RAATTY 2 cut(s) 203, 337
XceI RCATGY 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 792, 881
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.