Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Reverse (-)

16068024 .. 16069683

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTATCCTCTCTGCTCAATTCGCCTCTGCAGTGGCACTGATTGCGGCGGCTTCGCTGTGCCTGATCGACGCCAAGCAAGCCGGAATCGGAGTCGAAATCGGAAGCAGAGGAGGAGGAGGGCAGAGGGAGTTCGATTACTTCAACTTGGCCCTGCAATGGCCTGGCACTTTCTGTCAGCGCACCCGCTATTGTTGCTCCTCCAATGCTTGCTGCCGCGGCTCAAATGGTCCAACCGTGTTTACAATCCATGGATTGTGGCCTGACTACAATGATGGAACCTGGCCTGCTTGTTGCACACAGAAAACCTTTGATGAGAAAGAGATCTCAACATTGCATGATGCTTTAGAGAAATACTGGCCATCTTTAAGCTGTGGTAAACCATCATCCTGCCATGGTGGAAAAGGATCATTTTGGGGTCATGAGAGAAGCACGGGACTTGCTCCTCTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

152

Amino Acids

16.22

Weight (kDa)

6.86

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	45 - 142	5.8e-21	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	5 cut(s)	47, 50, 187, 217, 219
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	163, 281
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
AlwI	GGATC	1 cut(s)	415
AoxI	GGCC	5 cut(s)	150, 161, 260, 284, 359
ApeKI	GCWGC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	151, 230
AvaII	GGWCC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	3 cut(s)	269, 370, 391
BciT130I	CCWGG	2 cut(s)	165, 283
BfmI	CTRYAG	1 cut(s)	30
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	5 cut(s)	48, 51, 214, 217, 220
BlsI	GCNGC	5 cut(s)	49, 52, 215, 218, 221
Bme1390I	CCNGG	2 cut(s)	165, 283
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	151, 230
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	165, 283
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	217, 250, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	362, 451
Bse3DI	GCAATG	2 cut(s)	164, 332
BseBI	CCWGG	2 cut(s)	165, 283
BseDI	CCNNGG	3 cut(s)	217, 250, 394
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	2 cut(s)	164, 332
BseNI	ACTGG	2 cut(s)	362, 451
BseRI	GAGGAG	5 cut(s)	126, 129, 132, 190, 435
BseXI	GCAGC	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	5 cut(s)	152, 163, 262, 286, 361
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	5 cut(s)	152, 163, 262, 286, 361
Bsp143I	GATC	3 cut(s)	66, 324, 407
Bsp19I	CCATGG	2 cut(s)	250, 394
BspACI	CCGC	5 cut(s)	47, 50, 187, 217, 219
BspANI	GGCC	5 cut(s)	152, 163, 262, 286, 361
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	415
BsrDI	GCAATG	2 cut(s)	164, 332
BsrI	ACTGG	2 cut(s)	362, 451
BssECI	CCNNGG	3 cut(s)	217, 250, 394
BssMI	GATC	3 cut(s)	66, 324, 407
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	2 cut(s)	250, 394
Bst2UI	CCWGG	2 cut(s)	165, 283
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	81, 211, 288
BstDSI	CCRYGG	3 cut(s)	217, 250, 394
BstF5I	GGATG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	69, 327, 410
BstMBI	GATC	3 cut(s)	66, 324, 407
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 44, 80, 195, 219
BstNI	CCWGG	2 cut(s)	165, 283
BstSCI	CCNGG	2 cut(s)	163, 281
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	152, 163, 262, 286, 361
BtgI	CCRYGG	3 cut(s)	217, 250, 394
BtsCI	GGATG	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	38, 39
Cac8I	GCNNGC	3 cut(s)	81, 211, 288
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	151, 230
Cfr42I	CCGCGG	1 cut(s)	220
CseI	GACGC	1 cut(s)	80
CviAII	CATG	4 cut(s)	251, 338, 395, 422
DpnI	GATC	3 cut(s)	68, 326, 409
DpnII	GATC	3 cut(s)	66, 324, 407
EaeI	YGGCCR	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	250, 394
Eco47I	GGWCC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	163, 281
EcoT14I	CCWWGG	2 cut(s)	250, 394
ErhI	CCWWGG	2 cut(s)	250, 394
FaeI	CATG	4 cut(s)	254, 341, 398, 425
FaiI	YATR	4 cut(s)	252, 339, 396, 423
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	4 cut(s)	250, 337, 394, 421
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	5 cut(s)	48, 51, 214, 217, 220
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	5 cut(s)	48, 51, 214, 217, 220
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	5 cut(s)	48, 51, 214, 217, 220
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	5 cut(s)	152, 163, 262, 286, 361
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	254, 341, 398, 425
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	87, 93
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	2 cut(s)	243, 380
Hpy188I	TCNGA	2 cut(s)	92, 104
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	2 cut(s)	243, 380
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	32, 157, 297, 337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 44, 80, 195, 219
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	254, 341, 398, 425
HspAI	GCGC	1 cut(s)	181
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	66, 324, 407
LmnI	GCTCC	2 cut(s)	203, 448
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	331
MalI	GATC	3 cut(s)	68, 326, 409
MboI	GATC	3 cut(s)	66, 324, 407
MflI	RGATCY	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	9 cut(s)	20, 37, 104, 107, 110, 113, 120, 211, 456
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	165, 283
MvaI	CCWGG	2 cut(s)	165, 283
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	5 cut(s)	23, 44, 80, 195, 219
NcoI	CCATGG	2 cut(s)	250, 394
NdeII	GATC	3 cut(s)	66, 324, 407
NlaIII	CATG	4 cut(s)	254, 341, 398, 425
NlaIV	GGNNCC	1 cut(s)	280
PagI	TCATGA	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	5 cut(s)	49, 52, 215, 218, 221
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	163, 281
PspGI	CCWGG	2 cut(s)	163, 281
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	151, 230
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	324
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	5 cut(s)	48, 51, 214, 217, 220
Sau3AI	GATC	3 cut(s)	66, 324, 407
Sau96I	GGNCC	2 cut(s)	151, 230
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	165, 283
SetI	ASST	3 cut(s)	284, 311, 374
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	220
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	5 cut(s)	47, 50, 187, 217, 219
StyD4I	CCNGG	2 cut(s)	163, 281
StyI	CCWWGG	2 cut(s)	250, 394
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	69, 96, 135
TasI	AATT	1 cut(s)	20
TauI	GCSGC	4 cut(s)	50, 53, 219, 222
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	39, 45
TseI	GCWGC	1 cut(s)	213
TspRI	CASTG	2 cut(s)	39, 45
VpaK11BI	GGWCC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.