pycom10g13300

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0007992
Physical Location & Seq
Reverse (-)
16747330 .. 16749588
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1464 bp
ATGGTGTTTTTAGCCAATGCCAGTAACTTTGTGAGATACTTCTTGTTGTCAATGCATTACCCACATGCTACAGCAGCAAATATGGTGACGAATTTTATTGGAACCTCCTTTTTGCTCTCCATACTGGGAGGATTTATCAGTGACTCACTCTTCACAAGATTCACAACCTTAATCATCTCCTCTATCATAGAGTTGCTGGGATTAATTTTGCTGAGAATCCAAGCTCAGCACGCAAAATTTCGACCAGCATCGGGTGCTACGCCTTCTCGGTCTCAAGCAGCCATTCTATACACTGGCCTTTATGTCGTTGCTACCGGTGTAGGTGGAATCAATGCGTCCTTACCTGCACACGGTGCTGATCAGCTTGATCACTGCAATCAGAGACTCATCTCTACCTACTTCAATTGGTTTTTCTTTTCCCTGTGCCTTGGGGGCCTCCTAAGCTGTACTGTTATGGTTTGGGTGGAAGAGAACAAGGGCTGGAATTCGAGCTTTACTATTACAAGTATAGCCTTGAGTTTGGCACTTTCAATTTTCATCAGTGGGAGTCCATTTTATCGACACAAACGTCCTGGAGGAAGCGCATTGACAAGAATCTTTAAGGTTCTTGCTTCTACAGTTCGAAACTGGAAGGCCTCACCCGAAGAGAGAGTATTGGAGAACCAGTATGCAGTATCTGCAATCAATTCGAACGGAGTTAATGTGCGATCCCATAACAAGTATAAGTTCTTAGACAAAGCACTAATTGATAGCACAGTCAGTGCAGCTCAAGTTAAGGAAACAAAAACTTTTATAGGCCTTCTACCCATCTTTGCAAGCACAATCATGATGAATTGCTGCCTAGCCCAACTTCAGACATACTCAGTGGTACAAGGGAGCACAATGAACCGAAAACTACACAATTTCGAAATCCCAGTTCAGTCATTAACCGTACTCCCCCTCTCTGTTATGCTTGCTTCTATTCCCTTATATGAACGATTCCGAAGAATCTTAGGAGACAAAAACTCAGCAAAAAGTCACATCTTCCAACCACTTTGGAGGATTGGAGTAGGGCTAGCACTAGCATCTGTATCAATGGCTGTAGCTGCCATAGTTGAATCTCAGAGACGTAAGGTGGCTCATAAAAATGTCACATTGTCTTTCTTCTGGCTTGGCTGGCAATACCTCTTCCTTGGAGTCTCAGACATGCTCACTCTTGGAGGAATGCTCGAGTTCTTTTATTCGGAAGCGCCTGATAGCATGAGAAGCATGTCCACTTCATTGTCATGGTGCTCAACATCAATGGGTTACTTTTTGAGCTCAGTTCTGGTGTCCATAGCAAATTCATTGAGTGGAAGATTTGGTAAAGAGTGGCTTGGAGGAGCTGATGTGAATCATTCACGTTTGGATCTGTTTTACACTCTTCTCTGCATTCTCAACACTCTCAATGTTCTTAATTACCTATACTGGGCTAGGAAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

488

Amino Acids

54.04

Weight (kDa)

9.63

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 54 - 446 3.4e-84 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 567
Acc36I ACCTGC 1 cut(s) 352
AclWI GGATC 2 cut(s) 702, 1395
AcsI RAATTY 4 cut(s) 91, 236, 484, 1321
AcuI CTGAAG 1 cut(s) 836
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 3 cut(s) 448, 870, 933
AfiI CCNNNNNNNGG 3 cut(s) 251, 350, 1447
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 3 cut(s) 403, 531, 1097
AjnI CCWGG 1 cut(s) 571
AluBI AGCT 8 cut(s) 224, 364, 444, 492, 767, 1085, 1299, 1364
AluI AGCT 8 cut(s) 224, 364, 444, 492, 767, 1085, 1299, 1364
Alw21I GWGCWC 3 cut(s) 881, 1274, 1301
Alw26I GTCTC 5 cut(s) 276, 376, 990, 1099, 1183
AlwI GGATC 2 cut(s) 702, 1395
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 1208
AoxI GGCC 4 cut(s) 295, 433, 633, 796
ApeKI GCWGC 5 cut(s) 74, 278, 764, 837, 1085
ApoI RAATTY 4 cut(s) 91, 236, 484, 1321
AseI ATTAAT 1 cut(s) 203
AsiGI ACCGGT 1 cut(s) 314
AspLEI GCGC 2 cut(s) 584, 1231
AspS9I GGNCC 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 97, 630
AsuII TTCGAA 3 cut(s) 622, 689, 906
AsuNHI GCTAGC 1 cut(s) 1054
AvaI CYCGRG 1 cut(s) 1208
BanII GRGCYC 1 cut(s) 1301
Bbv12I GWGCWC 3 cut(s) 881, 1274, 1301
BbvI GCAGC 5 cut(s) 86, 290, 776, 824, 1072
BccI CCATC 1 cut(s) 815
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 1 cut(s) 573
BclI TGATCA 2 cut(s) 358, 367
BcoDI GTCTC 5 cut(s) 276, 376, 990, 1099, 1183
BfaI CTAG 4 cut(s) 842, 1055, 1061, 1452
BfmI CTRYAG 3 cut(s) 69, 615, 1080
BfoI RGCGCY 1 cut(s) 1232
BfuAI ACCTGC 1 cut(s) 352
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 5 cut(s) 75, 279, 765, 838, 1086
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 5 cut(s) 76, 280, 766, 839, 1087
Bme1390I CCNGG 1 cut(s) 573
BmeT110I CYCGRG 1 cut(s) 1208
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 2 cut(s) 103, 434
BmrFI CCNGG 1 cut(s) 573
BmrI ACTGGG 3 cut(s) 134, 908, 1456
BmsI GCATC 2 cut(s) 257, 1073
BmtI GCTAGC 1 cut(s) 1058
BmuI ACTGGG 3 cut(s) 134, 908, 1456
BplI GAGNNNNNCTC 2 cut(s) 1191, 1223
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 3 cut(s) 622, 689, 906
BpuEI CTTGAG 3 cut(s) 258, 535, 753
BsaBI GATNNNNATC 1 cut(s) 1371
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 427, 1171
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 6 cut(s) 650, 680, 687, 717, 1353, 1383
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 350, 1447
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 7 cut(s) 21, 129, 298, 632, 664, 914, 1451
Bse8I GATNNNNATC 1 cut(s) 1371
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 427, 1171
BseJI GATNNNNATC 1 cut(s) 1371
BseLI CCNNNNNNNGG 3 cut(s) 251, 350, 1447
BseMII CTCAG 7 cut(s) 203, 239, 876, 1020, 1115, 1194, 1314
BseNI ACTGG 7 cut(s) 21, 129, 298, 632, 664, 914, 1451
BseRI GAGGAG 2 cut(s) 169, 1374
BseXI GCAGC 5 cut(s) 86, 290, 776, 824, 1072
BseYI CCCAGC 1 cut(s) 196
BsgI GTGCAG 2 cut(s) 330, 783
BshFI GGCC 4 cut(s) 297, 435, 635, 798
BshTI ACCGGT 1 cut(s) 314
BsiHKAI GWGCWC 3 cut(s) 881, 1274, 1301
BsiHKCI CYCGRG 1 cut(s) 1208
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 3 cut(s) 251, 350, 1447
BsmAI GTCTC 5 cut(s) 276, 376, 990, 1099, 1183
BsmBI CGTCTC 1 cut(s) 1099
BsmI GAATGC 2 cut(s) 1209, 1410
BsnI GGCC 4 cut(s) 297, 435, 635, 798
Bso31I GGTCTC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 1208
Bsp119I TTCGAA 3 cut(s) 622, 689, 906
Bsp1286I GDGCHC 3 cut(s) 881, 1274, 1301
Bsp143I GATC 4 cut(s) 358, 367, 707, 1387
Bsp1720I GCTNAGC 1 cut(s) 225
BspANI GGCC 4 cut(s) 297, 435, 635, 798
BspCNI CTCAG 7 cut(s) 204, 238, 875, 1019, 1114, 1193, 1313
BspHI TCATGA 1 cut(s) 825
BspLI GGNNCC 2 cut(s) 103, 434
BspMI ACCTGC 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 1058
BspPI GGATC 2 cut(s) 702, 1395
BspT104I TTCGAA 3 cut(s) 622, 689, 906
BspTNI GGTCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 7 cut(s) 21, 129, 298, 632, 664, 914, 1451
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 427, 1171
BssMI GATC 4 cut(s) 358, 367, 707, 1387
BssT1I CCWWGG 2 cut(s) 427, 1171
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 5 cut(s) 353, 451, 619, 757, 931
Bst6I CTCTTC 5 cut(s) 155, 462, 639, 1172, 1407
BstAPI GCANNNNNTGC 3 cut(s) 254, 353, 677
BstBI TTCGAA 3 cut(s) 622, 689, 906
BstC8I GCNNGC 5 cut(s) 231, 817, 954, 1056, 1157
BstH2I RGCGCY 1 cut(s) 1232
BstHHI GCGC 2 cut(s) 584, 1231
BstKTI GATC 4 cut(s) 361, 370, 710, 1390
BstMAI GTCTC 5 cut(s) 276, 376, 990, 1099, 1183
BstMBI GATC 4 cut(s) 358, 367, 707, 1387
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 3 cut(s) 68, 1189, 1252
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 3 cut(s) 69, 615, 1080
BstV1I GCAGC 5 cut(s) 86, 290, 776, 824, 1072
BstX2I RGATCY 1 cut(s) 1387
BstYI RGATCY 1 cut(s) 1387
BsuRI GGCC 4 cut(s) 297, 435, 635, 798
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 6 cut(s) 145, 291, 370, 547, 766, 870
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 5 cut(s) 231, 817, 954, 1056, 1157
CaiI CAGNNNCTG 1 cut(s) 677
CciI TCATGA 1 cut(s) 825
CfoI GCGC 2 cut(s) 584, 1231
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 433
CseI GACGC 1 cut(s) 324
Csp6I GTAC 3 cut(s) 447, 869, 932
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 6 cut(s) 65, 826, 1186, 1240, 1249, 1266
CviQI GTAC 3 cut(s) 447, 869, 932
DpnI GATC 4 cut(s) 360, 369, 709, 1389
DpnII GATC 4 cut(s) 358, 367, 707, 1387
DraIII CACNNNGTG 1 cut(s) 353
DrdI GACNNNNNNGTC 1 cut(s) 567
DseDI GACNNNNNNGTC 1 cut(s) 567
Eam1104I CTCTTC 5 cut(s) 155, 462, 639, 1172, 1407
EarI CTCTTC 5 cut(s) 155, 462, 639, 1172, 1407
Ecl136II GAGCTC 1 cut(s) 1299
Eco130I CCWWGG 2 cut(s) 427, 1171
Eco147I AGGCCT 2 cut(s) 635, 798
Eco24I GRGCYC 1 cut(s) 1301
Eco31I GGTCTC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 1299
Eco57I CTGAAG 1 cut(s) 836
Eco88I CYCGRG 1 cut(s) 1208
EcoICRI GAGCTC 1 cut(s) 1299
EcoO109I RGGNCCY 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 427, 1171
EcoT22I ATGCAT 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 1301
ErhI CCWWGG 2 cut(s) 427, 1171
Esp3I CGTCTC 1 cut(s) 1099
FaeI CATG 6 cut(s) 68, 829, 1189, 1243, 1252, 1269
FalI AAGNNNNNCTT 2 cut(s) 1338, 1370
FatI CATG 6 cut(s) 64, 825, 1185, 1239, 1248, 1265
FbaI TGATCA 2 cut(s) 358, 367
Fnu4HI GCNGC 5 cut(s) 75, 279, 765, 838, 1086
FriOI GRGCYC 1 cut(s) 1301
Fsp4HI GCNGC 5 cut(s) 75, 279, 765, 838, 1086
FspBI CTAG 4 cut(s) 842, 1055, 1061, 1452
GlaI GCGC 2 cut(s) 583, 1230
GluI GCNGC 5 cut(s) 75, 279, 765, 838, 1086
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 1232
HaeIII GGCC 4 cut(s) 297, 435, 635, 798
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 324
HhaI GCGC 2 cut(s) 584, 1231
Hin1II CATG 6 cut(s) 68, 829, 1189, 1243, 1252, 1269
Hin6I GCGC 2 cut(s) 582, 1229
HinP1I GCGC 2 cut(s) 582, 1229
HpaII CCGG 1 cut(s) 315
HphI GGTGA 2 cut(s) 97, 630
Hpy166II GTNNAC 1 cut(s) 1254
Hpy188I TCNGA 6 cut(s) 381, 855, 983, 1104, 1183, 1225
Hpy188III TCNNGA 1 cut(s) 826
Hpy8I GTNNAC 1 cut(s) 1254
HpyAV CCTTC 3 cut(s) 273, 625, 809
HpyCH4III ACNGT 5 cut(s) 353, 451, 619, 757, 931
HpyCH4IV ACGT 3 cut(s) 568, 1108, 1381
HpyCH4V TGCA 8 cut(s) 55, 347, 375, 671, 680, 764, 815, 1410
HpySE526I ACGT 3 cut(s) 568, 1108, 1381
Hsp92II CATG 6 cut(s) 68, 829, 1189, 1243, 1252, 1269
HspAI GCGC 2 cut(s) 582, 1229
Ksp22I TGATCA 2 cut(s) 358, 367
Kzo9I GATC 4 cut(s) 358, 367, 707, 1387
LmnI GCTCC 2 cut(s) 876, 1361
Lsp1109I GCAGC 5 cut(s) 86, 290, 776, 824, 1072
LweI GCATC 2 cut(s) 257, 1073
MaeI CTAG 4 cut(s) 842, 1055, 1061, 1452
MaeII ACGT 3 cut(s) 568, 1108, 1381
MaeIII GTNAC 6 cut(s) 23, 85, 140, 1016, 1129, 1286
MalI GATC 4 cut(s) 360, 369, 709, 1389
MboI GATC 4 cut(s) 358, 367, 707, 1387
MboII GAAGA 9 cut(s) 142, 479, 656, 996, 1015, 1135, 1159, 1347, 1394
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 1 cut(s) 1387
MhlI GDGCHC 3 cut(s) 881, 1274, 1301
MlyI GAGTC 4 cut(s) 137, 378, 556, 1185
MmeI TCCRAC 1 cut(s) 1051
Mph1103I ATGCAT 1 cut(s) 57
MseI TTAA 7 cut(s) 170, 203, 600, 699, 774, 926, 1434
MslI CAYNNNNRTG 3 cut(s) 824, 1125, 1264
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 573
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 2 cut(s) 1209, 1410
MvaI CCWGG 1 cut(s) 573
NdeII GATC 4 cut(s) 358, 367, 707, 1387
NheI GCTAGC 1 cut(s) 1054
NlaIII CATG 6 cut(s) 68, 829, 1189, 1243, 1252, 1269
NlaIV GGNNCC 2 cut(s) 103, 434
NmuCI GTSAC 4 cut(s) 85, 140, 1016, 1129
NsiI ATGCAT 1 cut(s) 57
NspI RCATGY 3 cut(s) 68, 1189, 1252
NspV TTCGAA 3 cut(s) 622, 689, 906
PaeR7I CTCGAG 1 cut(s) 1208
PagI TCATGA 1 cut(s) 825
PceI AGGCCT 2 cut(s) 635, 798
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PctI GAATGC 2 cut(s) 1209, 1410
PfeI GAWTC 8 cut(s) 159, 216, 327, 594, 978, 987, 1097, 1372
PfoI TCCNGGA 1 cut(s) 571
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 5 cut(s) 76, 280, 766, 839, 1087
PleI GAGTC 4 cut(s) 137, 378, 555, 1184
PpsI GAGTC 4 cut(s) 137, 378, 555, 1184
PshBI ATTAAT 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 1301
Psp6I CCWGG 1 cut(s) 571
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 103, 434
PspPI GGNCC 1 cut(s) 433
PspXI VCTCGAGB 1 cut(s) 1208
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 1387
RsaI GTAC 3 cut(s) 448, 870, 933
RsaNI GTAC 3 cut(s) 447, 869, 932
RseI CAYNNNNRTG 3 cut(s) 824, 1125, 1264
SacI GAGCTC 1 cut(s) 1301
SaqAI TTAA 7 cut(s) 170, 203, 600, 699, 774, 926, 1434
SatI GCNGC 5 cut(s) 75, 279, 765, 838, 1086
Sau3AI GATC 4 cut(s) 358, 367, 707, 1387
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 4 cut(s) 137, 378, 556, 1185
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 3 cut(s) 881, 1274, 1301
SfaNI GCATC 2 cut(s) 257, 1073
SfcI CTRYAG 3 cut(s) 69, 615, 1080
Sfr274I CTCGAG 1 cut(s) 1208
SfuI TTCGAA 3 cut(s) 622, 689, 906
SlaI CTCGAG 1 cut(s) 1208
SmiMI CAYNNNNRTG 3 cut(s) 824, 1125, 1264
SmlI CTYRAG 4 cut(s) 273, 514, 768, 1208
SmoI CTYRAG 4 cut(s) 273, 514, 768, 1208
SseBI AGGCCT 2 cut(s) 635, 798
SspMI CTAG 4 cut(s) 842, 1055, 1061, 1452
SstI GAGCTC 1 cut(s) 1301
StuI AGGCCT 2 cut(s) 635, 798
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 2 cut(s) 427, 1171
TaaI ACNGT 5 cut(s) 353, 451, 619, 757, 931
TaiI ACGT 3 cut(s) 571, 1111, 1384
TaqI TCGA 7 cut(s) 241, 488, 559, 622, 689, 906, 1209
TaqII GACCGA 1 cut(s) 258
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 8 cut(s) 159, 216, 327, 594, 978, 987, 1097, 1372
Tru1I TTAA 7 cut(s) 170, 203, 600, 699, 774, 926, 1434
Tru9I TTAA 7 cut(s) 170, 203, 600, 699, 774, 926, 1434
TscAI CASTG 6 cut(s) 145, 298, 377, 547, 766, 870
TseFI GTSAC 4 cut(s) 85, 140, 1016, 1129
TseI GCWGC 5 cut(s) 74, 278, 764, 837, 1085
Tsp45I GTSAC 4 cut(s) 85, 140, 1016, 1129
TspDTI ATGAA 6 cut(s) 526, 845, 899, 987, 1248, 1314
TspGWI ACGGA 1 cut(s) 708
TspRI CASTG 6 cut(s) 145, 298, 377, 547, 766, 870
VspI ATTAAT 1 cut(s) 203
XapI RAATTY 4 cut(s) 91, 236, 484, 1321
XceI RCATGY 3 cut(s) 68, 1189, 1252
XhoI CTCGAG 1 cut(s) 1208
XspI CTAG 4 cut(s) 842, 1055, 1061, 1452
Zsp2I ATGCAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.