pycom10g13470

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013547
Physical Location & Seq
Reverse (-)
16907092 .. 16908324
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGCTCCCCAACATTACACTCTTCCTCCGTCGCTCTATGATGATGCCGGTGACTTTACGCCGCCTTCTCACCGGCGTCACCGCCACTATCAGAAACCCTAATGTTCACCTTCTTCCACGCCCACCTCTCCCCTATCGCCACGTACATCCCCAACCCTCATTTCCGTCCTCACATCCGTCACTCTATCTCAACCACCGCCTGCTGTCCTCCTCACCCACCGAAAACCCTATCCCTCTAAACCCGCTCCGAACCCGAACCCCACTTGAAAAGCACTTCGAGACGTGGGTCCAGAAGCTCAAACCCGGGTTCGGGCCACTCGAAGTGAACGAGGCCCTGAAAGCCCAATCGGACGCGGATCGATCGCCCTCGACATTTTTCGGTGGACCGCCCAGCAGCGGAACTACAAGCACAACCACGCCACCTACCTCACCATCGATCAGAATCTTGCTCGACGGCAGACGCTACCGCCACGCCGAAACCCTAGTCGAAGAGGTTGATGATGCAATGCAGGTTTTTCGCGAAATGGGGTTGTACGGGTGTGAGCCGAATGCGTATACTTATGGCTACATAGCTAAGGGGTTGTGTGAGAAGGGGAGGGTTGCTCAGGGTTTAGGGTTTTACAAGGAAATGAGAGGAAAAGGGTTGGTGCCTAGCAGTAGTTCGTATATGATTGTGATTTGCAGTCTCGCTATGGAACGGAAGTATGATGATGCGACTGAGGTTGTGCTTGATATGTTGAGTAATGCTATGTCTCCTGATTTGTTAACTTACAAAACGTTGTTGGAAGGGTTGTGCCGGGATGGAAAGGGTGTCAAGGCATTTGATTTACTAGAGGATTTCCGGAGGAAGGATAGTATGATGAATGAAAGGACTTACAAGACTTTGTTAAATGCTTTGCATTTTGTAAATGGAGAGTAG

Protein Analysis

306

Amino Acids

34.29

Weight (kDa)

9.08

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 163 - 295 6.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 164 - 195 8.8e-08 PPR repeat family
PPR_2 PF13041 217 - 266 6.2e-09 PPR repeat family
PPR_1 PF12854 250 - 278 9e-07 PPR repeat
PPR_2 PF13041 256 - 299 2.5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25210
fragaria_vesca FvH4_3g25580
malus_domestica MD05G1166500.v1.1 MD10G1156500.v1.1
prunus_persica Prupe.8G194300_v2.0.a1
pyrus_communis pycom05g15510 pycom10g13470
rosa_chinensis RchiOBHm_Chr5g0046411
rosa_laevigata RLG00000034408
rosa_multiflora Rmu_sc0003878.1_g000050
rosa_roxburghii Rroxscaffold_1G00034990 Rroxscaffold_7G00197530
rosa_rugosa Rorug05G0227800
rosa_samantha Rh5AG309000 Rh5BG317200 Rh5CG343100 Rh5DG327400
rosa_wichuraiana Rw0G021510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 499
AccB1I GGYRCC 1 cut(s) 646
AccBSI CCGCTC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 554
AccII CGCG 2 cut(s) 353, 519
AccIII TCCGGA 1 cut(s) 840
AciI CCGC 8 cut(s) 61, 81, 196, 242, 353, 386, 396, 466
AclI AACGTT 1 cut(s) 776
AclWI GGATC 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 144, 533
AfiI CCNNNNNNNGG 4 cut(s) 308, 309, 395, 847
AgsI TTSAA 1 cut(s) 266
AjiI CACGTC 1 cut(s) 282
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 295, 572
AluI AGCT 2 cut(s) 295, 572
Alw26I GTCTC 3 cut(s) 272, 689, 756
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 302
Aor13HI TCCGGA 1 cut(s) 840
AoxI GGCC 2 cut(s) 311, 330
ApeKI GCWGC 1 cut(s) 393
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
AspS9I GGNCC 4 cut(s) 286, 311, 331, 383
AsuC2I CCSGG 3 cut(s) 303, 304, 797
AsuHPI GGTGA 6 cut(s) 61, 61, 70, 98, 204, 420
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 2 cut(s) 286, 383
BanI GGYRCC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 405
BccI CCATC 2 cut(s) 439, 794
BceAI ACGGC 1 cut(s) 469
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BcnI CCSGG 3 cut(s) 303, 304, 797
BcoDI GTCTC 3 cut(s) 272, 689, 756
BfaI CTAG 3 cut(s) 482, 651, 830
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 2 cut(s) 61, 394
BlsI GCNGC 2 cut(s) 62, 395
Bme1390I CCNGG 3 cut(s) 303, 304, 797
Bme18I GGWCC 2 cut(s) 286, 383
BmeT110I CYCGRG 1 cut(s) 302
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 4 cut(s) 286, 311, 331, 383
BmiI GGNNCC 2 cut(s) 287, 648
BmrFI CCNGG 3 cut(s) 303, 304, 797
BmsI GCATC 3 cut(s) 33, 490, 700
BoxI GACNNNNGTC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 586, 618
Bpu10I CCTNAGC 2 cut(s) 573, 603
BpuMI CCSGG 3 cut(s) 303, 304, 797
Bsa29I ATCGAT 2 cut(s) 358, 434
BsaAI YACGTR 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 840
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 4 cut(s) 308, 309, 395, 847
Bse118I RCCGGY 2 cut(s) 46, 71
Bse3DI GCAATG 1 cut(s) 510
Bse8I GATNNNNATC 1 cut(s) 440
BseAI TCCGGA 1 cut(s) 840
BseCI ATCGAT 2 cut(s) 358, 434
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 3 cut(s) 145, 172, 805
BseJI GATNNNNATC 1 cut(s) 440
BseLI CCNNNNNNNGG 4 cut(s) 308, 309, 395, 847
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 2 cut(s) 617, 708
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 405
BseYI CCCAGC 1 cut(s) 389
Bsh1236I CGCG 2 cut(s) 353, 519
Bsh1285I CGRYCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 313, 332
BshNI GGYRCC 1 cut(s) 646
BshVI ATCGAT 2 cut(s) 358, 434
BsiEI CGRYCG 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 5 cut(s) 47, 72, 303, 796, 841
BslI CCNNNNNNNGG 4 cut(s) 308, 309, 395, 847
BsmAI GTCTC 3 cut(s) 272, 689, 756
BsmBI CGTCTC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 313, 332
BsoBI CYCGRG 1 cut(s) 302
Bsp13I TCCGGA 1 cut(s) 840
Bsp143I GATC 3 cut(s) 355, 359, 435
Bsp68I TCGCGA 1 cut(s) 519
BspACI CCGC 8 cut(s) 61, 81, 196, 242, 353, 386, 396, 466
BspANI GGCC 2 cut(s) 313, 332
BspCNI CTCAG 2 cut(s) 616, 709
BspDI ATCGAT 2 cut(s) 358, 434
BspEI TCCGGA 1 cut(s) 840
BspFNI CGCG 2 cut(s) 353, 519
BspLI GGNNCC 2 cut(s) 287, 648
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 2 cut(s) 46, 71
BssAI RCCGGY 2 cut(s) 46, 71
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 355, 359, 435
BssNAI GTATAC 1 cut(s) 555
BssNI GRCGYC 1 cut(s) 75
Bst1107I GTATAC 1 cut(s) 555
Bst6I CTCTTC 2 cut(s) 26, 483
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 573, 603, 717
BstF5I GGATG 3 cut(s) 145, 172, 805
BstFNI CGCG 2 cut(s) 353, 519
BstKTI GATC 3 cut(s) 358, 362, 438
BstMAI GTCTC 3 cut(s) 272, 689, 756
BstMBI GATC 3 cut(s) 355, 359, 435
BstMCI CGRYCG 1 cut(s) 362
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstPAI GACNNNNGTC 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 301, 302, 795
BstUI CGCG 2 cut(s) 353, 519
BstV1I GCAGC 1 cut(s) 405
BstZ17I GTATAC 1 cut(s) 555
Bsu15I ATCGAT 2 cut(s) 358, 434
BsuRI GGCC 2 cut(s) 313, 332
BsuTUI ATCGAT 2 cut(s) 358, 434
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 3 cut(s) 145, 172, 805
BtuMI TCGCGA 1 cut(s) 519
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 200
Cfr10I RCCGGY 2 cut(s) 46, 71
Cfr13I GGNCC 4 cut(s) 286, 311, 331, 383
Cfr9I CCCGGG 1 cut(s) 302
ClaI ATCGAT 2 cut(s) 358, 434
CseI GACGC 3 cut(s) 64, 359, 468
Csp6I GTAC 2 cut(s) 143, 532
CviJI RGCY 7 cut(s) 295, 313, 332, 341, 544, 564, 572
CviKI_1 RGCY 7 cut(s) 295, 313, 332, 341, 544, 564, 572
CviQI GTAC 2 cut(s) 143, 532
DdeI CTNAG 3 cut(s) 573, 603, 717
DpnI GATC 3 cut(s) 357, 361, 437
DpnII GATC 3 cut(s) 355, 359, 435
Eam1104I CTCTTC 2 cut(s) 26, 483
EarI CTCTTC 2 cut(s) 26, 483
Eco47I GGWCC 2 cut(s) 286, 383
Eco88I CYCGRG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 272
FauI CCCGC 1 cut(s) 249
FblI GTMKAC 1 cut(s) 554
Fnu4HI GCNGC 2 cut(s) 61, 394
FokI GGATG 3 cut(s) 132, 159, 812
Fsp4HI GCNGC 2 cut(s) 61, 394
FspBI CTAG 3 cut(s) 482, 651, 830
GluI GCNGC 2 cut(s) 61, 394
GsaI CCCAGC 1 cut(s) 393
HaeIII GGCC 2 cut(s) 313, 332
HapII CCGG 5 cut(s) 47, 72, 303, 796, 841
HgaI GACGC 3 cut(s) 64, 359, 468
Hin1I GRCGYC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 765
HindII GTYRAC 1 cut(s) 765
HinfI GANTC 1 cut(s) 441
HpaI GTTAAC 1 cut(s) 765
HpaII CCGG 5 cut(s) 47, 72, 303, 796, 841
HphI GGTGA 6 cut(s) 61, 61, 70, 98, 204, 420
Hpy166II GTNNAC 5 cut(s) 106, 325, 383, 555, 765
Hpy188I TCNGA 4 cut(s) 92, 248, 349, 440
Hpy188III TCNNGA 5 cut(s) 277, 289, 518, 755, 841
Hpy8I GTNNAC 5 cut(s) 106, 325, 383, 555, 765
Hpy99I CGWCG 2 cut(s) 33, 455
HpyAV CCTTC 5 cut(s) 74, 119, 583, 779, 841
HpyCH4IV ACGT 3 cut(s) 141, 281, 776
HpyCH4V TGCA 4 cut(s) 503, 508, 681, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 3 cut(s) 573, 603, 717
HpySE526I ACGT 3 cut(s) 141, 281, 776
Hsp92I GRCGYC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 840
KspAI GTTAAC 1 cut(s) 765
Kzo9I GATC 3 cut(s) 355, 359, 435
LmnI GCTCC 2 cut(s) 9, 249
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 3 cut(s) 33, 490, 700
MaeI CTAG 3 cut(s) 482, 651, 830
MaeII ACGT 3 cut(s) 141, 281, 776
MaeIII GTNAC 3 cut(s) 49, 76, 177
MalI GATC 3 cut(s) 357, 361, 437
MbiI CCGCTC 1 cut(s) 244
MboI GATC 3 cut(s) 355, 359, 435
MboII GAAGA 3 cut(s) 13, 104, 500
MmeI TCCRAC 1 cut(s) 762
MroI TCCGGA 1 cut(s) 840
MseI TTAA 2 cut(s) 764, 887
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 5 cut(s) 47, 72, 303, 796, 841
MspR9I CCNGG 3 cut(s) 303, 304, 797
Mva1269I GAATGC 1 cut(s) 553
MvnI CGCG 2 cut(s) 353, 519
MwoI GCNNNNNNNGC 1 cut(s) 338
NciI CCSGG 3 cut(s) 303, 304, 797
NdeII GATC 3 cut(s) 355, 359, 435
NlaIV GGNNCC 2 cut(s) 287, 648
NmuCI GTSAC 3 cut(s) 49, 76, 177
NruI TCGCGA 1 cut(s) 519
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 324
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 2 cut(s) 62, 395
Ple19I CGATCG 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 142
PshAI GACNNNNGTC 1 cut(s) 284
Psp1406I AACGTT 1 cut(s) 776
PspFI CCCAGC 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 287, 648
PspPI GGNCC 4 cut(s) 286, 311, 331, 383
PvuI CGATCG 1 cut(s) 362
RruI TCGCGA 1 cut(s) 519
RsaI GTAC 2 cut(s) 144, 533
RsaNI GTAC 2 cut(s) 143, 532
SaqAI TTAA 2 cut(s) 764, 887
SatI GCNGC 2 cut(s) 61, 394
Sau3AI GATC 3 cut(s) 355, 359, 435
Sau96I GGNCC 4 cut(s) 286, 311, 331, 383
ScrFI CCNGG 3 cut(s) 303, 304, 797
SfaNI GCATC 3 cut(s) 33, 490, 700
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 2 cut(s) 286, 383
SmaI CCCGGG 1 cut(s) 304
SsiI CCGC 8 cut(s) 61, 81, 196, 242, 353, 386, 396, 466
SspMI CTAG 3 cut(s) 482, 651, 830
StyD4I CCNGG 3 cut(s) 301, 302, 795
TaiI ACGT 3 cut(s) 144, 284, 779
TaqI TCGA 7 cut(s) 276, 318, 358, 368, 434, 450, 486
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 2 cut(s) 764, 887
Tru9I TTAA 2 cut(s) 764, 887
TseFI GTSAC 3 cut(s) 49, 76, 177
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 3 cut(s) 49, 76, 177
TspDTI ATGAA 2 cut(s) 875, 879
TspGWI ACGGA 4 cut(s) 17, 153, 165, 712
TspMI CCCGGG 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 286, 383
XmaI CCCGGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 554
XspI CTAG 3 cut(s) 482, 651, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.