Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006858

Physical Location & Seq

Genomic Coordinates Reverse (-)

17753075 .. 17754252

Gene Structure 1178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGACGGAAATCAGCAGCCTCAGCTCCGATGTGACGGAGCTCATCCTTTCCTACCTCCCCATCCCCACCCTCATCCGCGCCTCCGCCGTCTGCAAGCACTGGCATTCCCTCATCTCCTCCTCCATCTTCTCCTCCTTACACTCCCATAAATACCCTTGGTTCTTCCTCTACGGCATCCACAATACCTCCTCCAACTTTAACCAGTCGTTCGCCTTCGACCCTTTCTCCAACCTCTGGTTCCGCCTCCCCTCACCCACCTTCCCCTCCCAGTCCTCCTCCTTCTTCAGCGCCGACGGCTTCTTCCTCATCACCGCCCCCCTTTTCACCTTCTCTCCTATTCTCAAGCGCCACTGGCTTTCCACCTCCCCTCTCCGATTTTCCCCCATCAACCCCCTTGTTGGCGTCGATTCTCCCCCCTCCTCCTCCTCCCCCATCCCTAGTTTCGTCGTAGTCGGCGGCGTCCGATTCATCGGCAATTTGGTCGACATCGAGGACTGTTTGGATGTCGAGATTTACAACCCCGATTCCGATTCCTGGCTCCTATGCCCTCTCCTCCCCGCCGATTTCCGCTCTGGAAACTCGTCCCAGTCGCTCTCCTCCGCCCTCTTCAAGCGCCGGTTCTACGTCTTTAGAATCTACTCCTGCTTCGTTACCCTCCACCCGCCCGGTGTCGTCTTCTCCTTCCTGATTTCCTCCACCAACCACCTCATCCTCACTGGAATATGCAACGGCCTTCTCGGGCCCTCCTTCAACCTGTGGAAGGTGGAGGAGACCACAATGGAGTTCAGTGAGATCGCCATCATGCCACAGGACTTGTTGTATGGATTGTTCGACGGCGATGAGGAAGACAAGTTTGCTAGCTTGAACTGTGTGGGATTGGGAAATCTTATATACGTGTTCAATGAGGAGTATCATAAAAAGTATCCGGCTTGTGTTTGCGAGATTGTTTCCGATGACAATGGTGGACCTTCGGGGAAGTGTAGCTGGAGGAGAATGCCCCAATTGCCTTCCCCTGTTAATAAATTCCATAAAGTTGTCAGCTTTTCTTCGACGGTTTCACTCCGTAATATCCTTCGCGGCGAAGGGGAGGGCGAGGGAGACGGTGTTGGCGATTTGCAGCCTATGTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

378

Amino Acids

41.96

Weight (kDa)

5.35

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 43	4.3e-09	F-box domain
F-box-like	PF12937	10 - 41	9.9e-08	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24760 AT3G24760
fragaria_vesca	FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330 FvH4_2g19330
malus_domestica	MD05G1178400.v1.1
prunus_persica	Prupe.8G204900_v2.0.a1 Prupe.8G204900_v2.0.a1
pyrus_communis	pycom10g14360
rosa_chinensis	RchiOBHm_Chr6g0285141
rosa_laevigata	RLG00000012669
rosa_multiflora	Rmu_co8327663.1_g000001 Rmu_sc0002535.1_g000018 Rmu_sc0012068.1_g000004
rosa_roxburghii	Rroxscaffold_7G00183630 Rroxscaffold_7G00184000
rosa_rugosa	Rorug06G0172000 Rorug06G0172100 Rorug06G0172100
rosa_samantha	Rh6BG283400 Rh6CG285200 Rh6DG278300
rosa_wichuraiana	Rw6G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	234
AccBSI	CCGCTC	1 cut(s)	570
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	2 cut(s)	78, 1077
AcsI	RAATTY	1 cut(s)	1022
AcuI	CTGAAG	1 cut(s)	268
AcyI	GRCGYC	2 cut(s)	402, 459
AfiI	CCNNNNNNNGG	4 cut(s)	234, 398, 534, 760
AflIII	ACRYGT	1 cut(s)	894
AgsI	TTSAA	4 cut(s)	610, 751, 865, 901
AjnI	CCWGG	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	24, 40, 861, 984, 1041
AluI	AGCT	5 cut(s)	24, 40, 861, 984, 1041
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	764, 1092
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	2 cut(s)	730, 740
ApaI	GGGCCC	1 cut(s)	744
ApeKI	GCWGC	2 cut(s)	15, 1117
ApoI	RAATTY	1 cut(s)	1022
AspLEI	GCGC	4 cut(s)	80, 290, 348, 615
AspS9I	GGNCC	3 cut(s)	740, 741, 965
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	3 cut(s)	243, 301, 316
AsuNHI	GCTAGC	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	965
BaeGI	GKGCMC	1 cut(s)	744
BanII	GRGCYC	2 cut(s)	42, 744
BbsI	GAAGAC	2 cut(s)	667, 852
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	27, 1129
BccI	CCATC	5 cut(s)	68, 131, 392, 440, 806
BceAI	ACGGC	5 cut(s)	71, 187, 310, 745, 850
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	933
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	764, 1092
BfaI	CTAG	2 cut(s)	438, 858
BfoI	RGCGCY	3 cut(s)	291, 349, 616
BfuI	GTATCC	1 cut(s)	933
BisI	GCNGC	4 cut(s)	16, 457, 1078, 1118
BlsI	GCNGC	4 cut(s)	17, 458, 1079, 1119
Bme1390I	CCNGG	2 cut(s)	535, 666
Bme18I	GGWCC	1 cut(s)	965
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	3 cut(s)	740, 741, 965
BmiI	GGNNCC	3 cut(s)	239, 539, 742
BmrFI	CCNGG	2 cut(s)	535, 666
BmrI	ACTGGG	2 cut(s)	262, 580
BmsI	GCATC	1 cut(s)	183
BmtI	GCTAGC	1 cut(s)	861
BmuI	ACTGGG	2 cut(s)	262, 580
BpiI	GAAGAC	2 cut(s)	667, 852
BpmI	CTGGAG	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	666
BsaAI	YACGTR	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	2 cut(s)	402, 459
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	8 cut(s)	170, 200, 209, 239, 316, 346, 1089, 1119
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 398, 534, 760
Bse118I	RCCGGY	1 cut(s)	615
Bse1I	ACTGG	6 cut(s)	104, 202, 268, 356, 586, 721
Bse8I	GATNNNNATC	1 cut(s)	797
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	7 cut(s)	42, 60, 72, 174, 432, 508, 708
BseJI	GATNNNNATC	1 cut(s)	797
BseLI	CCNNNNNNNGG	4 cut(s)	234, 398, 534, 760
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	6 cut(s)	104, 202, 268, 356, 586, 721
BseSI	GKGCMC	1 cut(s)	744
BseXI	GCAGC	2 cut(s)	27, 1129
Bsh1236I	CGCG	2 cut(s)	78, 1077
BshFI	GGCC	2 cut(s)	732, 742
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	3 cut(s)	616, 666, 926
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	4 cut(s)	234, 398, 534, 760
BsmAI	GTCTC	2 cut(s)	764, 1092
BsmBI	CGTCTC	1 cut(s)	1092
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	2 cut(s)	103, 999
BsnI	GGCC	2 cut(s)	732, 742
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	737
Bsp120I	GGGCCC	1 cut(s)	740
Bsp1286I	GDGCHC	2 cut(s)	42, 744
Bsp143I	GATC	1 cut(s)	792
BspANI	GGCC	2 cut(s)	732, 742
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	2 cut(s)	78, 1077
BspLI	GGNNCC	3 cut(s)	239, 539, 742
BspOI	GCTAGC	1 cut(s)	861
BspTNI	GGTCTC	1 cut(s)	764
BsrBI	CCGCTC	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	615
BsrI	ACTGG	6 cut(s)	104, 202, 268, 356, 586, 721
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	1 cut(s)	792
BssNI	GRCGYC	2 cut(s)	402, 459
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	4 cut(s)	497, 869, 1054, 1103
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	2 cut(s)	402, 459
BstBAI	YACGTR	1 cut(s)	895
BstC8I	GCNNGC	2 cut(s)	95, 859
BstDEI	CTNAG	1 cut(s)	20
BstENI	CCTNNNNNAGG	1 cut(s)	758
BstF5I	GGATG	7 cut(s)	42, 60, 72, 174, 432, 508, 708
BstFNI	CGCG	2 cut(s)	78, 1077
BstH2I	RGCGCY	3 cut(s)	291, 349, 616
BstHHI	GCGC	4 cut(s)	80, 290, 348, 615
BstKTI	GATC	1 cut(s)	795
BstMAI	GTCTC	2 cut(s)	764, 1092
BstMBI	GATC	1 cut(s)	792
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 294, 352, 1003
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	2 cut(s)	533, 664
BstSLI	GKGCMC	1 cut(s)	744
BstUI	CGCG	2 cut(s)	78, 1077
BstV1I	GCAGC	2 cut(s)	27, 1129
BstV2I	GAAGAC	2 cut(s)	667, 852
BsuI	GTATCC	1 cut(s)	933
BsuRI	GGCC	2 cut(s)	732, 742
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	7 cut(s)	42, 60, 72, 174, 432, 508, 708
BtsIMutI	CAGTG	4 cut(s)	97, 349, 714, 793
Cac8I	GCNNGC	2 cut(s)	95, 859
CfoI	GCGC	4 cut(s)	80, 290, 348, 615
Cfr10I	RCCGGY	1 cut(s)	615
Cfr13I	GGNCC	3 cut(s)	740, 741, 965
CseI	GACGC	2 cut(s)	391, 448
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	1 cut(s)	802
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	1 cut(s)	794
DpnII	GATC	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	3 cut(s)	73, 230, 589
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	2 cut(s)	42, 744
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	965
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	758
EcoO109I	RGGNCCY	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	2 cut(s)	42, 744
ErhI	CCWWGG	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	1092
FaeI	CATG	1 cut(s)	805
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	1 cut(s)	801
FauI	CCCGC	2 cut(s)	565, 669
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	16, 457, 1078, 1118
FokI	GGATG	7 cut(s)	29, 47, 59, 161, 419, 515, 695
FriOI	GRGCYC	2 cut(s)	42, 744
Fsp4HI	GCNGC	4 cut(s)	16, 457, 1078, 1118
FspBI	CTAG	2 cut(s)	438, 858
GlaI	GCGC	4 cut(s)	79, 289, 347, 614
GluI	GCNGC	4 cut(s)	16, 457, 1078, 1118
GsuI	CTGGAG	1 cut(s)	1006
HaeII	RGCGCY	3 cut(s)	291, 349, 616
HaeIII	GGCC	2 cut(s)	732, 742
HapII	CCGG	3 cut(s)	616, 666, 926
HgaI	GACGC	2 cut(s)	391, 448
HhaI	GCGC	4 cut(s)	80, 290, 348, 615
Hin1I	GRCGYC	2 cut(s)	402, 459
Hin1II	CATG	1 cut(s)	805
Hin6I	GCGC	4 cut(s)	78, 288, 346, 613
HinP1I	GCGC	4 cut(s)	78, 288, 346, 613
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	5 cut(s)	407, 465, 524, 530, 633
HpaII	CCGG	3 cut(s)	616, 666, 926
HphI	GGTGA	3 cut(s)	243, 301, 316
Hpy166II	GTNNAC	2 cut(s)	484, 965
Hpy188I	TCNGA	5 cut(s)	28, 374, 464, 529, 952
Hpy188III	TCNNGA	3 cut(s)	508, 573, 685
Hpy8I	GTNNAC	2 cut(s)	484, 965
Hpy99I	CGWCG	5 cut(s)	296, 407, 449, 836, 1054
HpyCH4III	ACNGT	4 cut(s)	497, 869, 1054, 1103
HpyCH4IV	ACGT	2 cut(s)	624, 894
HpyCH4V	TGCA	3 cut(s)	93, 726, 1117
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 294, 352, 1003
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	2 cut(s)	624, 894
Hsp92I	GRCGYC	2 cut(s)	402, 459
Hsp92II	CATG	1 cut(s)	805
HspAI	GCGC	4 cut(s)	78, 288, 346, 613
Kzo9I	GATC	1 cut(s)	792
LmnI	GCTCC	3 cut(s)	29, 37, 543
Lsp1109I	GCAGC	2 cut(s)	27, 1129
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	438, 858
MaeII	ACGT	2 cut(s)	624, 894
MaeIII	GTNAC	2 cut(s)	31, 649
MalI	GATC	1 cut(s)	794
MbiI	CCGCTC	1 cut(s)	570
MboI	GATC	1 cut(s)	792
MboII	GAAGA	8 cut(s)	118, 154, 274, 292, 598, 667, 857, 1038
MfeI	CAATTG	1 cut(s)	1001
MhlI	GDGCHC	2 cut(s)	42, 744
MluCI	AATT	3 cut(s)	475, 1001, 1022
MmeI	TCCRAC	3 cut(s)	216, 252, 1107
MseI	TTAA	2 cut(s)	198, 1017
MspI	CCGG	3 cut(s)	616, 666, 926
MspR9I	CCNGG	2 cut(s)	535, 666
MunI	CAATTG	1 cut(s)	1001
Mva1269I	GAATGC	2 cut(s)	103, 999
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	2 cut(s)	78, 1077
MwoI	GCNNNNNNNGC	4 cut(s)	21, 294, 352, 1003
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	1 cut(s)	792
NheI	GCTAGC	1 cut(s)	857
NlaIII	CATG	1 cut(s)	805
NlaIV	GGNNCC	3 cut(s)	239, 539, 742
NmuCI	GTSAC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	1107
PctI	GAATGC	2 cut(s)	103, 999
PfeI	GAWTC	5 cut(s)	407, 465, 524, 530, 633
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	17, 458, 1079, 1119
Ppu21I	YACGTR	1 cut(s)	895
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	3 cut(s)	239, 539, 742
PspOMI	GGGCCC	1 cut(s)	740
PspPI	GGNCC	3 cut(s)	740, 741, 965
PsrI	GAACNNNNNNTAC	2 cut(s)	812, 844
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	198, 1017
SatI	GCNGC	4 cut(s)	16, 457, 1078, 1118
Sau3AI	GATC	1 cut(s)	792
Sau96I	GGNCC	3 cut(s)	740, 741, 965
ScrFI	CCNGG	2 cut(s)	535, 666
SduI	GDGCHC	2 cut(s)	42, 744
SfaNI	GCATC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	965
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	475, 1001, 1022
SspMI	CTAG	2 cut(s)	438, 858
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	533, 664
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	4 cut(s)	497, 869, 1054, 1103
TaiI	ACGT	2 cut(s)	627, 897
TaqI	TCGA	7 cut(s)	216, 405, 483, 489, 507, 831, 1049
TasI	AATT	3 cut(s)	475, 1001, 1022
TauI	GCSGC	2 cut(s)	459, 1080
TfiI	GAWTC	5 cut(s)	407, 465, 524, 530, 633
Tru1I	TTAA	2 cut(s)	198, 1017
Tru9I	TTAA	2 cut(s)	198, 1017
TscAI	CASTG	4 cut(s)	104, 356, 721, 793
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	15, 1117
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	457
TspGWI	ACGGA	3 cut(s)	20, 50, 1052
TspRI	CASTG	4 cut(s)	104, 356, 721, 793
Van91I	CCANNNNNTGG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	965
XagI	CCTNNNNNAGG	1 cut(s)	758
XapI	RAATTY	1 cut(s)	1022
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	2 cut(s)	438, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.