pycom10g15650

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011816
Physical Location & Seq
Reverse (-)
18874631 .. 18877117
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGAACATGTTCAGTAAGAAACCCACGGCCAAAGAGGCTCTTCGGGAGAGCAAGAGAGAAATGGCTAATGCTACCAGAGGGATAGAGAAGGAAATTGGAGCATTGCAATTAGAAGAAAAGAAGCTTGTCGCTGAGATAAAGAGAACAGCTAAAACCGGAAACGAGGGAGCAACTAAAATACTAGCCAGGCAGCTAGTCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTCGAGCTCAAATGAGAGGAATAGCAACTCATACGCAGGCAATGCATGCTCAGTCCTCAGTTGCTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGCTCCCGCAAAGCAAGCAAAGGTGATACGCGAGTTTCAGAAGCAATCTGCGCAAATGGATATGACTACTGAAATGATGTCCGATGCCATAGATGATGCCTTGGATAATGATGAGGCGGAAGAGGAAACTGACGAGCTGACAGACCAGGTGCTGGATGAAATTGGCGTTGATGTCGCCTCGCAGCTTTCAGCAGCTCCCAAAGGAAAAATTGCATCAAAGAACGCTGAGGGTGTTAGCAGTTCCAGCGTTGCTGATCTTGAGAAAAGATTGGCAGCTCTTAGAAATCCATGA

Protein Analysis

213

Amino Acids

22.95

Weight (kDa)

8.73

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 16 - 185 3.7e-41 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03950
fragaria_vesca FvH4_2g21140 FvH4_2g21140
malus_domestica MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica Prupe.8G220500_v2.0.a1
pyrus_communis pycom10g15650
rosa_chinensis RchiOBHm_Chr6g0287631
rosa_laevigata RLG00000012478
rosa_multiflora Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa Rorug06G0190300 Rorug06G0190400
rosa_samantha Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana Rw6G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 399
AccB7I CCANNNNNTGG 1 cut(s) 499
AccII CGCG 1 cut(s) 378
AciI CCGC 2 cut(s) 354, 464
AcoI YGGCCR 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 499
AflIII ACRYGT 1 cut(s) 6
AjnI CCWGG 2 cut(s) 185, 492
Alw21I GWGCWC 1 cut(s) 241
AlwNI CAGNNNCTG 2 cut(s) 296, 499
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 5 cut(s) 190, 329, 529, 539, 620
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 382
BaeI ACNNNNGTAYC 2 cut(s) 365, 398
BanII GRGCYC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 5 cut(s) 202, 341, 541, 551, 632
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 187, 494
BfaI CTAG 3 cut(s) 182, 194, 315
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 5 cut(s) 191, 330, 530, 540, 621
BlsI GCNGC 5 cut(s) 192, 331, 531, 541, 622
Bme1390I CCNGG 2 cut(s) 187, 494
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 187, 494
BmsI GCATC 3 cut(s) 421, 433, 569
Bpu10I CCTNAGC 2 cut(s) 203, 573
BpuEI CTTGAG 1 cut(s) 626
BsaJI CCNNGG 2 cut(s) 24, 447
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse3DI GCAATG 3 cut(s) 101, 279, 330
BseBI CCWGG 2 cut(s) 187, 494
BseDI CCNNGG 2 cut(s) 24, 447
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 3 cut(s) 101, 279, 330
BseMII CTCAG 4 cut(s) 123, 296, 303, 564
BseXI GCAGC 5 cut(s) 202, 341, 541, 551, 632
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 499
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 2 cut(s) 354, 464
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 4 cut(s) 124, 295, 302, 565
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 351
BspQI GCTCTTC 1 cut(s) 45
BsrDI GCAATG 3 cut(s) 101, 279, 330
BssECI CCNNGG 2 cut(s) 24, 447
BssMI GATC 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 187, 494
Bst6I CTCTTC 2 cut(s) 45, 462
BstAPI GCANNNNNTGC 2 cut(s) 274, 278
BstC8I GCNNGC 3 cut(s) 270, 279, 363
BstDEI CTNAG 6 cut(s) 132, 203, 282, 289, 573, 626
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 1 cut(s) 604
BstMBI GATC 1 cut(s) 601
BstMWI GCNNNNNNNGC 9 cut(s) 35, 199, 274, 278, 320, 329, 362, 397, 591
BstNI CCWGG 2 cut(s) 187, 494
BstNSI RCATGY 2 cut(s) 10, 281
BstSCI CCNGG 2 cut(s) 185, 492
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 5 cut(s) 202, 341, 541, 551, 632
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 3 cut(s) 270, 279, 363
CaiI CAGNNNCTG 2 cut(s) 296, 499
CfoI GCGC 1 cut(s) 400
CsiI ACCWGGT 1 cut(s) 492
CviAII CATG 4 cut(s) 7, 278, 304, 636
DdeI CTNAG 6 cut(s) 132, 203, 282, 289, 573, 626
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 45, 462
EarI CTCTTC 2 cut(s) 45, 462
EciI GGCGGA 1 cut(s) 479
Ecl136II GAGCTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 185, 492
EcoT14I CCWWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 4 cut(s) 10, 281, 307, 639
FaiI YATR 8 cut(s) 8, 264, 279, 305, 335, 410, 437, 637
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 4 cut(s) 6, 277, 303, 635
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 5 cut(s) 191, 330, 530, 540, 621
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 5 cut(s) 191, 330, 530, 540, 621
FspBI CTAG 3 cut(s) 182, 194, 315
FspI TGCGCA 1 cut(s) 399
GlaI GCGC 1 cut(s) 399
GluI GCNGC 5 cut(s) 191, 330, 530, 540, 621
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 156
HhaI GCGC 1 cut(s) 400
Hin1II CATG 4 cut(s) 10, 281, 307, 639
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HindIII AAGCTT 1 cut(s) 122
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 387, 430
Hpy188III TCNNGA 2 cut(s) 44, 605
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 106, 277, 560
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 199, 274, 278, 320, 329, 362, 397, 591
HpyF3I CTNAG 6 cut(s) 132, 203, 282, 289, 573, 626
Hsp92II CATG 4 cut(s) 10, 281, 307, 639
HspAI GCGC 1 cut(s) 398
Kzo9I GATC 1 cut(s) 601
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 98, 167, 355, 547
Lsp1109I GCAGC 5 cut(s) 202, 341, 541, 551, 632
LweI GCATC 3 cut(s) 421, 433, 569
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 3 cut(s) 182, 194, 315
MalI GATC 1 cut(s) 603
MboI GATC 1 cut(s) 601
MboII GAAGA 3 cut(s) 32, 125, 479
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 4 cut(s) 93, 107, 507, 555
MnlI CCTC 9 cut(s) 28, 71, 157, 242, 298, 454, 463, 535, 568
Mph1103I ATGCAT 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 187, 494
MvaI CCWGG 2 cut(s) 187, 494
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 9 cut(s) 35, 199, 274, 278, 320, 329, 362, 397, 591
NdeII GATC 1 cut(s) 601
NlaIII CATG 4 cut(s) 10, 281, 307, 639
NlaIV GGNNCC 1 cut(s) 351
NsbI TGCGCA 1 cut(s) 399
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 2 cut(s) 10, 281
PaeI GCATGC 1 cut(s) 281
PciI ACATGT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 5 cut(s) 192, 331, 531, 541, 622
PscI ACATGT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 185, 492
PspGI CCWGG 2 cut(s) 185, 492
PspN4I GGNNCC 1 cut(s) 351
PstNI CAGNNNCTG 2 cut(s) 296, 499
SacI GAGCTC 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 45
SatI GCNGC 5 cut(s) 191, 330, 530, 540, 621
Sau3AI GATC 1 cut(s) 601
ScrFI CCNGG 2 cut(s) 187, 494
SduI GDGCHC 1 cut(s) 241
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 3 cut(s) 421, 433, 569
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SphI GCATGC 1 cut(s) 281
Sse9I AATT 4 cut(s) 93, 107, 507, 555
SsiI CCGC 2 cut(s) 354, 464
SspMI CTAG 3 cut(s) 182, 194, 315
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 185, 492
StyI CCWWGG 1 cut(s) 447
TaqI TCGA 1 cut(s) 235
TasI AATT 4 cut(s) 93, 107, 507, 555
TseI GCWGC 5 cut(s) 190, 329, 529, 539, 620
TspDTI ATGAA 4 cut(s) 17, 320, 350, 519
Van91I CCANNNNNTGG 1 cut(s) 499
XceI RCATGY 2 cut(s) 10, 281
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 182, 194, 315
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.