pycom10g18360

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014691
Physical Location & Seq
Forward (+)
21656781 .. 21657953
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGGTGCAGCTGTTGAAAGCCCAAATTAATGGGCTAGCTAGGCAATCAGAGATTCTAATTTCATGGAAGGAACCCTTCAGATTATTAGGGTTTGTCATTGGTGGCAGAACATACAGAACACTTCATTGCAGAGACTCTTATCACCATACCTACTTGCTACAGCACTGTAAAAGCACCATATCAATCAAAAAACTCCATGCCCGGATAATTACTGGAGGTTTTGAGCAAAACCCATTTGTTGTTGCAAAGCTAGTTGGCAAGTATGTCGAGTGCAGTGAATCAAGCATGGAAGCTCCACGTAAGCTGTTTGATAAATTGCTTGAGAGAGACGTTTTTGTGTGGAACATGGTTATTCAGGATTATGCAAATGTGGTTCCTTTTGTTGAAGCCCTCAATGTGTATGATAGAATTCGGTTCAGTGGTGTACCTGCAAACCGGTACACCCACCCTTTTGTGCTCGAGGCTTGCGGTGCAATGAGAGATGTAAAAAGAGGTCGGATTGTTCATGGACATGTCGTGAAATGTGGACTCGACTCGGATTTGTCTGTTGGGAATGCTCTTATTGCCTTGTATTCCAAGTGTGAGGAGATTGAGATATCGAGAAGAGTGTTCGATGAAATACCTGAGAAAGATTCTTTCAGTTGGAATTCCATGATTTCGGGGTACACGGCAAGTGGGAATCCTCATGAAGCTCTCATTCGTTCCATGCTGCAAGATCATGCCACATGCTTGCCTGACCATGCCACTCTTGTTTGCATTCTTCCTGCTTGTGTTCCAATTATGAAAGCCGATGCTGTTTTAGGCAGCGCTCTCATTACAATGTATGCAAATTGTGGTTGCGTAACCACTGCCAGAGTTATTTTTGATCAAATCAGCGAGAATACTGTGATCCTGTGGAGTGCGATTGTCCGTTGTTATGGAATGCACAGGCATGTAGATGAGGCACTCCAAGTGTTTTCGCAGTTTGTGGAGACTGGCTTACGCCCGGATGGTACTGTATTTTTGTGTTTACCGTCCACTTGTAGTCACTCAGGGATCGATCACAAAAGGCTTGGAACTTTTCGAGAAAACGGTAGATTATGGAGTAACAATAAGCAAGAAACACTACGCCTGTGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

374

Amino Acids

42.0

Weight (kDa)

8.31

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014691)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13960
malus_domestica MD05G1239500.v1.1 MD10G1217700.v1.1
prunus_persica Prupe.4G126300_v2.0.a1
pyrus_communis pycom05g21580 pycom10g18360
rosa_chinensis RchiOBHm_Chr5g0023171
rosa_laevigata RLG00000032705
rosa_multiflora Rmu_sc0007300.1_g000014
rosa_roxburghii Rroxscaffold_1G00056170
rosa_rugosa Rorug05G0077700
rosa_samantha Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600
rosa_wichuraiana Rw0G018300 Rw5G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
AciI CCGC 1 cut(s) 468
AclWI GGATC 2 cut(s) 883, 1043
AcsI RAATTY 2 cut(s) 408, 646
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 4 cut(s) 426, 440, 665, 994
AfeI AGCGCT 1 cut(s) 808
AflIII ACRYGT 1 cut(s) 511
AgeI ACCGGT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 16, 386
AluBI AGCT 6 cut(s) 10, 38, 250, 293, 304, 692
AluI AGCT 6 cut(s) 10, 38, 250, 293, 304, 692
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 3 cut(s) 126, 321, 965
AlwI GGATC 2 cut(s) 883, 1043
Ama87I CYCGRG 1 cut(s) 458
Aor51HI AGCGCT 1 cut(s) 808
ApeKI GCWGC 3 cut(s) 7, 709, 804
ApoI RAATTY 2 cut(s) 408, 646
AseI ATTAAT 1 cut(s) 27
AsiGI ACCGGT 1 cut(s) 435
AspLEI GCGC 1 cut(s) 809
AsuC2I CCSGG 2 cut(s) 202, 986
AsuHPI GGTGA 1 cut(s) 134
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 19, 696, 816
BccI CCATC 1 cut(s) 983
BceAI ACGGC 1 cut(s) 684
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BclI TGATCA 1 cut(s) 865
BcnI CCSGG 2 cut(s) 202, 986
BcoDI GTCTC 3 cut(s) 126, 321, 965
BfaI CTAG 3 cut(s) 35, 39, 251
BfmI CTRYAG 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 3 cut(s) 8, 710, 805
BlsI GCNGC 3 cut(s) 9, 711, 806
Bme1390I CCNGG 2 cut(s) 202, 986
BmeT110I CYCGRG 1 cut(s) 458
BmiI GGNNCC 2 cut(s) 72, 375
BmrFI CCNGG 2 cut(s) 202, 986
BmsI GCATC 1 cut(s) 781
BmtI GCTAGC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 2 cut(s) 202, 986
Bsa29I ATCGAT 1 cut(s) 1038
BsaAI YACGTR 1 cut(s) 299
BsaWI WCCGGW 1 cut(s) 435
Bse118I RCCGGY 1 cut(s) 435
Bse1I ACTGG 2 cut(s) 217, 979
Bse3DI GCAATG 2 cut(s) 124, 480
BseCI ATCGAT 1 cut(s) 1038
BseGI GGATG 1 cut(s) 994
BseMI GCAATG 2 cut(s) 124, 480
BseMII CTCAG 2 cut(s) 615, 1044
BseNI ACTGG 2 cut(s) 217, 979
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 3 cut(s) 19, 696, 816
BsgI GTGCAG 2 cut(s) 26, 292
BshTI ACCGGT 1 cut(s) 435
BshVI ATCGAT 1 cut(s) 1038
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 3 cut(s) 202, 436, 986
BsmAI GTCTC 3 cut(s) 126, 321, 965
BsmBI CGTCTC 1 cut(s) 321
BsmI GAATGC 3 cut(s) 559, 756, 927
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 5 cut(s) 715, 865, 888, 1035, 1039
BspACI CCGC 1 cut(s) 468
BspCNI CTCAG 2 cut(s) 616, 1043
BspDI ATCGAT 1 cut(s) 1038
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 2 cut(s) 72, 375
BspMI ACCTGC 1 cut(s) 436
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 2 cut(s) 883, 1043
BsrDI GCAATG 2 cut(s) 124, 480
BsrFI RCCGGY 1 cut(s) 435
BsrI ACTGG 2 cut(s) 217, 979
BssAI RCCGGY 1 cut(s) 435
BssMI GATC 5 cut(s) 715, 865, 888, 1035, 1039
Bst4CI ACNGT 5 cut(s) 167, 886, 997, 1014, 1073
Bst6I CTCTTC 1 cut(s) 598
BstBAI YACGTR 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 36, 466, 731
BstDEI CTNAG 2 cut(s) 624, 1030
BstF5I GGATG 1 cut(s) 994
BstH2I RGCGCY 1 cut(s) 810
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 5 cut(s) 718, 868, 891, 1038, 1042
BstMAI GTCTC 3 cut(s) 126, 321, 965
BstMBI GATC 5 cut(s) 715, 865, 888, 1035, 1039
BstMWI GCNNNNNNNGC 3 cut(s) 40, 470, 563
BstNSI RCATGY 3 cut(s) 515, 729, 935
BstSCI CCNGG 2 cut(s) 200, 984
BstSFI CTRYAG 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 19, 696, 816
BstXI CCANNNNNNTGG 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 1038
BsuTUI ATCGAT 1 cut(s) 1038
BtsCI GGATG 1 cut(s) 994
BtsI GCAGTG 2 cut(s) 280, 846
BtsIMutI CAGTG 4 cut(s) 163, 280, 424, 846
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 36, 466, 731
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 1 cut(s) 435
ClaI ATCGAT 1 cut(s) 1038
Csp6I GTAC 4 cut(s) 425, 439, 664, 993
CspAI ACCGGT 1 cut(s) 435
CviQI GTAC 4 cut(s) 425, 439, 664, 993
DdeI CTNAG 2 cut(s) 624, 1030
DpnI GATC 5 cut(s) 717, 867, 890, 1037, 1041
DpnII GATC 5 cut(s) 715, 865, 888, 1035, 1039
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 597
Eco47III AGCGCT 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 458
EcoRI GAATTC 2 cut(s) 408, 646
EcoRV GATATC 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 321
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FbaI TGATCA 1 cut(s) 865
Fnu4HI GCNGC 3 cut(s) 8, 710, 805
FokI GGATG 1 cut(s) 1001
Fsp4HI GCNGC 3 cut(s) 8, 710, 805
FspBI CTAG 3 cut(s) 35, 39, 251
GlaI GCGC 1 cut(s) 808
GluI GCNGC 3 cut(s) 8, 710, 805
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 810
HapII CCGG 3 cut(s) 202, 436, 986
HhaI GCGC 1 cut(s) 809
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HinfI GANTC 7 cut(s) 52, 134, 278, 528, 533, 632, 679
HpaII CCGG 3 cut(s) 202, 436, 986
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 6 cut(s) 425, 441, 527, 666, 1010, 1017
Hpy188I TCNGA 4 cut(s) 49, 80, 498, 538
Hpy188III TCNNGA 5 cut(s) 356, 517, 600, 686, 1064
Hpy8I GTNNAC 6 cut(s) 425, 441, 527, 666, 1010, 1017
HpyAV CCTTC 2 cut(s) 61, 85
HpyCH4III ACNGT 5 cut(s) 167, 886, 997, 1014, 1073
HpyCH4IV ACGT 2 cut(s) 298, 330
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 470, 563
HpyF3I CTNAG 2 cut(s) 624, 1030
HpySE526I ACGT 2 cut(s) 298, 330
HspAI GCGC 1 cut(s) 807
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 5 cut(s) 715, 865, 888, 1035, 1039
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 3 cut(s) 19, 696, 816
LweI GCATC 1 cut(s) 781
MaeI CTAG 3 cut(s) 35, 39, 251
MaeII ACGT 2 cut(s) 298, 330
MaeIII GTNAC 3 cut(s) 841, 1025, 1085
MalI GATC 5 cut(s) 717, 867, 890, 1037, 1041
MboI GATC 5 cut(s) 715, 865, 888, 1035, 1039
MboII GAAGA 2 cut(s) 615, 752
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 8 cut(s) 24, 57, 207, 314, 408, 646, 777, 829
MlyI GAGTC 3 cut(s) 128, 522, 527
MmeI TCCRAC 2 cut(s) 476, 623
MnlI CCTC 7 cut(s) 209, 401, 454, 485, 577, 693, 934
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 4 cut(s) 510, 818, 930, 936
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 3 cut(s) 202, 436, 986
MspR9I CCNGG 2 cut(s) 202, 986
Mva1269I GAATGC 3 cut(s) 559, 756, 927
MwoI GCNNNNNNNGC 3 cut(s) 40, 470, 563
NciI CCSGG 2 cut(s) 202, 986
NdeII GATC 5 cut(s) 715, 865, 888, 1035, 1039
NheI GCTAGC 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 72, 375
NmuCI GTSAC 1 cut(s) 1025
NspI RCATGY 3 cut(s) 515, 729, 935
PaeR7I CTCGAG 1 cut(s) 458
PagI TCATGA 1 cut(s) 685
PciI ACATGT 1 cut(s) 511
PctI GAATGC 3 cut(s) 559, 756, 927
PfeI GAWTC 4 cut(s) 52, 278, 632, 679
PinAI ACCGGT 1 cut(s) 435
PkrI GCNGC 3 cut(s) 9, 711, 806
PleI GAGTC 3 cut(s) 128, 522, 527
PpsI GAGTC 3 cut(s) 128, 522, 527
Ppu21I YACGTR 1 cut(s) 299
PscI ACATGT 1 cut(s) 511
PshBI ATTAAT 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 72, 375
PspXI VCTCGAGB 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 4 cut(s) 426, 440, 665, 994
RsaNI GTAC 4 cut(s) 425, 439, 664, 993
RseI CAYNNNNRTG 4 cut(s) 510, 818, 930, 936
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 8, 710, 805
Sau3AI GATC 5 cut(s) 715, 865, 888, 1035, 1039
SchI GAGTC 3 cut(s) 128, 522, 527
ScrFI CCNGG 2 cut(s) 202, 986
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 458
SlaI CTCGAG 1 cut(s) 458
SmiMI CAYNNNNRTG 4 cut(s) 510, 818, 930, 936
SmlI CTYRAG 2 cut(s) 320, 458
SmoI CTYRAG 2 cut(s) 320, 458
Sse9I AATT 8 cut(s) 24, 57, 207, 314, 408, 646, 777, 829
SsiI CCGC 1 cut(s) 468
SspMI CTAG 3 cut(s) 35, 39, 251
StyD4I CCNGG 2 cut(s) 200, 984
TaaI ACNGT 5 cut(s) 167, 886, 997, 1014, 1073
TaiI ACGT 2 cut(s) 301, 333
TaqI TCGA 7 cut(s) 267, 459, 531, 599, 612, 1038, 1063
TasI AATT 8 cut(s) 24, 57, 207, 314, 408, 646, 777, 829
TfiI GAWTC 4 cut(s) 52, 278, 632, 679
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 4 cut(s) 170, 280, 424, 853
TseFI GTSAC 1 cut(s) 1025
TseI GCWGC 3 cut(s) 7, 709, 804
Tsp45I GTSAC 1 cut(s) 1025
TspDTI ATGAA 6 cut(s) 51, 113, 494, 630, 702, 797
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 4 cut(s) 170, 280, 424, 853
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 2 cut(s) 408, 646
XceI RCATGY 3 cut(s) 515, 729, 935
XhoI CTCGAG 1 cut(s) 458
XspI CTAG 3 cut(s) 35, 39, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.