pycom10g18810

DREPP plasma membrane polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003896
Physical Location & Seq
Reverse (-)
22060898 .. 22061971
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGGGTTATTGGCAAACAAAGGTGCTTCCAAAGATCAAGAAGGTGTTTGAGACCAAAACCAGTACAAAAAAGGCTGCTGCTGCTGAGGCTTGCAAGTCCTTTGATGACTCCAAGGAGGAAATAACCAAGGAGTTTGAGGAAAAGAAGGCTGAGCTTCAAGCAAAAGTAATTGAATTATATGAAGCTTCCTCATCTGAAATCAAGACTTTGGTTAAGGAGCGCAAGGAGTCAGGGTTGAAGAAGTATTCAGCTGCAGTCCTGAAGTTCCTTGAAGAGTTGGCTAAAATTGAATTCCCAGGATCCAAACCAGTATCAGAAGCCTCTTCAAAATATGGGCCAGCCTACGTTTCAGGTCCAGTTTTCTTTGTGTTTGAGAAGGTGTCAACATTCATTGTGACTGAGGAGAAGGTGGAGCCGCCGCTGCCAGCCGAAGCAGCAAAGACTGAGGAGGAAACAAGTGGTTGTGTAAAAGAAAAGGAGATAGTGATTGAAGAAGAGGTGGTGGAGGAGAAGAAAGAAGAGGTAGTGGTGGAGGAGAAAGAGGAGGAGGTTAAGAAACCTAAACCTACTGAGCCAGATGCTGCTGCTGAGGCTCCTCCCCCCAAGGTGGAGGAATCTGCTGCTGCAGAACCACCAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DREPP

Protein Analysis

215

Amino Acids

23.76

Weight (kDa)

4.95

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DREPP PF05558 1 - 212 6e-79 DREPP plasma membrane polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 416, 419
AclWI GGATC 2 cut(s) 294, 307
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 607
AgsI TTSAA 7 cut(s) 158, 173, 238, 272, 290, 327, 491
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 4 cut(s) 154, 185, 251, 640
AluI AGCT 4 cut(s) 154, 185, 251, 640
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 294, 307
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 335, 353
AvaII GGWCC 1 cut(s) 353
BamHI GGATCC 1 cut(s) 299
BbvCI CCTCAGC 2 cut(s) 84, 588
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 2 cut(s) 252, 624
BlpI GCTNAGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 335, 353
BmiI GGNNCC 3 cut(s) 301, 414, 594
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 568
Bpu10I CCTNAGC 2 cut(s) 84, 588
Bpu1102I GCTNAGC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 4 cut(s) 111, 126, 295, 603
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse1I ACTGG 3 cut(s) 60, 308, 356
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 4 cut(s) 111, 126, 295, 603
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 6 cut(s) 75, 141, 390, 435, 561, 579
BseNI ACTGG 3 cut(s) 60, 308, 356
BseRI GAGGAG 7 cut(s) 416, 461, 521, 548, 557, 560, 585
BshFI GGCC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 607
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 33, 299
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 2 cut(s) 416, 419
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 6 cut(s) 76, 142, 391, 436, 562, 580
BspLI GGNNCC 3 cut(s) 301, 414, 594
BspMAI CTGCAG 2 cut(s) 256, 628
BspPI GGATC 2 cut(s) 294, 307
BspTNI GGTCTC 1 cut(s) 44
BsrI ACTGG 3 cut(s) 60, 308, 356
BssECI CCNNGG 4 cut(s) 111, 126, 295, 603
BssMI GATC 2 cut(s) 33, 299
BssT1I CCWWGG 3 cut(s) 111, 126, 603
Bst2UI CCWGG 1 cut(s) 297
Bst6I CTCTTC 4 cut(s) 267, 328, 489, 513
BstC8I GCNNGC 3 cut(s) 91, 339, 426
BstDEI CTNAG 6 cut(s) 84, 150, 399, 444, 570, 588
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 36, 302
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 33, 299
BstMWI GCNNNNNNNGC 5 cut(s) 80, 86, 421, 434, 590
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 2 cut(s) 252, 624
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 91, 339, 426
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 335, 353
Csp6I GTAC 1 cut(s) 63
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 6 cut(s) 84, 150, 399, 444, 570, 588
DpnI GATC 2 cut(s) 35, 301
DpnII GATC 2 cut(s) 33, 299
Eam1104I CTCTTC 4 cut(s) 267, 328, 489, 513
EarI CTCTTC 4 cut(s) 267, 328, 489, 513
Eco130I CCWWGG 3 cut(s) 111, 126, 603
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 3 cut(s) 111, 126, 603
ErhI CCWWGG 3 cut(s) 111, 126, 603
FaiI YATR 3 cut(s) 178, 180, 333
GlaI GCGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 337
HhaI GCGC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 183, 638
HinfI GANTC 3 cut(s) 107, 227, 614
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 2 cut(s) 196, 316
Hpy188III TCNNGA 3 cut(s) 37, 202, 259
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 4 cut(s) 34, 139, 370, 400
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 93, 254, 626
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 86, 421, 434, 590
HpyF3I CTNAG 6 cut(s) 84, 150, 399, 444, 570, 588
HpySE526I ACGT 1 cut(s) 345
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 33, 299
LmnI GCTCC 3 cut(s) 217, 412, 598
LweI GCATC 1 cut(s) 568
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 394
MalI GATC 2 cut(s) 35, 301
MboI GATC 2 cut(s) 33, 299
MboII GAAGA 7 cut(s) 250, 284, 315, 503, 506, 523, 530
MflI RGATCY 1 cut(s) 299
MluCI AATT 4 cut(s) 168, 173, 285, 290
MlyI GAGTC 2 cut(s) 101, 236
MseI TTAA 2 cut(s) 213, 552
MspA1I CMGCKG 2 cut(s) 251, 421
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 5 cut(s) 80, 86, 421, 434, 590
NdeII GATC 2 cut(s) 33, 299
NlaIV GGNNCC 3 cut(s) 301, 414, 594
NmuCI GTSAC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 614
PleI GAGTC 2 cut(s) 101, 235
PpsI GAGTC 2 cut(s) 101, 235
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 3 cut(s) 301, 414, 594
PspPI GGNCC 2 cut(s) 335, 353
PstI CTGCAG 2 cut(s) 256, 628
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 213, 552
Sau3AI GATC 2 cut(s) 33, 299
Sau96I GGNCC 2 cut(s) 335, 353
SchI GAGTC 2 cut(s) 101, 236
ScrFI CCNGG 1 cut(s) 297
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 2 cut(s) 252, 624
SinI GGWCC 1 cut(s) 353
Sse9I AATT 4 cut(s) 168, 173, 285, 290
SsiI CCGC 2 cut(s) 416, 419
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 3 cut(s) 111, 126, 603
TaiI ACGT 1 cut(s) 348
TasI AATT 4 cut(s) 168, 173, 285, 290
TatI WGTACW 1 cut(s) 62
TauI GCSGC 2 cut(s) 418, 421
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 2 cut(s) 213, 552
Tru9I TTAA 2 cut(s) 213, 552
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 195, 379
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.