Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Reverse (-)

22222096 .. 22224810

Gene Structure 2715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGTCCTCCTCCTACACTCAACTGCTCACACCTCTCTCTGGCCCCTTACCTTCCCAACCACTTTCTTCCCTCCAAATCCACCAACCCACAACTCTCAAAACACACACTCTAAAGCCCTCTCCTTTACTCAACCCACCCACCACCACCGCCGGCGGCGGTTCTGCACCGAAACTCGCATCCCACTCTCACACTCCGGCCACATGGGTCGAGACCCTCCGCTCCCAAACCCGGTCCAATCATTTCCGAGAAGCCATTTCTACGTACATCGAAATGACTCTTTCAGGTGTGGCACCCGACAACTTTGCTTTTCCTGCAGTTCTGAAGGCCGTCACGGGGATTCAGGACTTGAATTTGGGGAAACAGATTCACGCCCATGTTGTGAAATTCGGGTATGGGTTATCCTCGGTGACCGTGGCTAATACCCTTGTTAATGTGTATGGGAAATGTGGAGATATTGGAGATGCGTGCAAAGTGTTCGATGGAATAACTGACAGAGACCAAGTTTCTTGGAATTCCATGATTGCTGCGTTGTGTCGGATCGAGGAATGGGAACTTGCTCTCGATGCGTTTAGGTCGATGTTATTGGAGAATATGGAGCCTAGCTCCTTTACTTTGGTGAGTGTGGCACATGCTTGTTCAAATTTGCATAAGCGTGATGGATTGCGGCTTGGGAAGCAAGTTCATGCGTATAGTCTGAGAGTGAGTGATTGGAAAACATTTACAATCAATGCTTTATTGGCAATGTATGCTAAATTAGGATTGGTTGAGTACTCGAGAGCTTTGTTCGAGATATTTGAGGACTGTGACATGGTTTCGTGGAACACAATGATAAGTTCGTTCTCTCAGAACGACCAGTTTATGGAAGCATTAGAGTTCTTCCGCCTAATGGTTCTTGCAGGACTCAAACCAGATGGGGTTACAGTTGCAAGTGTTCTTCCGGCCTGTTCTCATCTGGAGATGTTAGATACAGGGAAGGAAATTCATGCTTATGCCTTAAGAACCACTGAATTAAGTGAAAATTCTTATGTTGGTAGTGCTTTAGTTGACATGTATTGCAACTGCCGACAAGTTGGAAGTGGTCGTCGAGTTTTTGACGCTGTCTTGGAGCGGAAAATTCCACTTTGGAATGCAATGATTACTGGCTATGCACAAAATGAGTACGACGAGGAGGCATTGAAACTGTTCCTTGAAATGTATGCTGCCTCCGCGCTTTCCCCAAATTCCACCACAATGTCGAGTATTGTGCCAGCCTGTGTGCGGTCTGAAGCATTCGCTGATAAAGAGAGTATCCATGGTTATGTAATAAAGAGGGGTCTGGAGAAGAACAGGTACGTGCAAAATGCGCTTGTGGACATGTACTCCCGGTTAGGAAAGACAGTAATTTCAGAAATCATATTTAACAGCATGGAGGCAAAAGACATAGTGTCGTGGAACACCATGATCACTGGTTATGTTATTTCTGGACGCCATGGTGATGCGCTTAATCTGCTATGTGATATGCAAAGAGTAGAAGAAAAGAAGAACACAGATTATACTGGTTATGACAATGAAAAAAGGATTCCTCTTAAACCAAATTCAATAACATTCATGACAATTCTTCCTGGTTGTGCTGCACTGGGAGCACTCGCTAAGGGGAAAGAGATCCATGCTTATGCTATTAGACACTTATTGGCATTTGATGTTGCAGTAGGAAGTGCACTGGTTGACATGTATGCGAAATGTGGCTGTATAGATTTAGCTAGAGCTGTGTTTAATCAGATACCAATAAAGAATGTGATAACCTGGAATGTACTTATCATGGCTTATGGAATGCACGGGAGAGGGGAGGAAGCATTAGAACTACTTAGGGATATGGTGGATGAAGGAAGACGAAACAAGGAGGTAAGGCCTAATGAAGTTACGTTCATTGCACTTTTTGCAGCATGTAGTCATTCTGGGATGGTTGATGAAGGCCTGAATTTGTTCCGAAAAATGAAAGAGGACTATGGAATTGAACCTGCACCAGATCATTATGCTTGTGTTGTAGACTTGCTTGGTCGGGCTGGTAATGTGGAGGAAGCATATCAACTCATCAACTCTATGCCTTCTCAACTCGATAAAGCAGGTGCTTGGAGTAGCTTGCTTGGTGCTTGTCGAATTCAACAGAATATAGAGATTGGAGAAGTTGCAGCTAATCATCTCCTGCAATTGGAGCCTGATGTGGCTAGTCACTATGTTCTACTTTCTAATATCTACTCATCTTCCGGACTCTGGGAAAAGGCAATGGATCTTCGGAGAAAGATGAGGGAATTGGGAGTGAGAAAAGAACCTGGTTATAGTTGGATTGAGTTTGGCGATGAGGTTCATAAGTTTTTGGCTGGAGATTTGTCACACCAACAAAGTAAGCAGCTCCATGAATTTCTCGAAACCCTGTCAGAAAAGATGAAAAAGGAGGGTTATGTGCCTGATACTTCTTGTGTGCTTCACAATGTTGACGAGGAGGAGAAAGAAACTCTACTCTGTGGGCATAGCGAGAAACTGGCAATAGCGTTTGGCATTCTCAATACCCGTCCCGGGACTACCATTAGAGTTTCCAAGAACCTTCGAGTTTGTAATGACTGCCACACTGCGTCAAAGTATATCTCCAAGATTACGGACAGGGAGATCATTCTGAGAGATGTAAGAAGGTTCCATCACTTTAAAAAGGGGACTTGTTCATGCGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

905

Amino Acids

100.63

Weight (kDa)

6.15

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	166 - 213	3.9e-08	PPR repeat family
PPR_2	PF13041	269 - 316	2.9e-08	PPR repeat family
PPR	PF01535	271 - 300	1.1e-06	PPR repeat
PPR_2	PF13041	374 - 419	5.3e-06	PPR repeat family
PPR_2	PF13041	472 - 502	4.3e-06	PPR repeat family
PPR_2	PF13041	590 - 622	1.7e-06	PPR repeat family
PPR	PF01535	593 - 622	4.8e-08	PPR repeat
E_motif	PF20431	715 - 776	4.3e-17	E motif
DYW_deaminase	PF14432	812 - 904	4e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2093
Acc36I	ACCTGC	2 cut(s)	2005, 2093
AccB1I	GGYRCC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	859
AccBSI	CCGCTC	2 cut(s)	219, 1108
AccI	GTMKAC	1 cut(s)	2025
AccII	CGCG	1 cut(s)	1208
AccIII	TCCGGA	1 cut(s)	2243
AclWI	GGATC	3 cut(s)	545, 1636, 2274
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	341, 1284
AcyI	GRCGYC	1 cut(s)	1465
AfaI	GTAC	6 cut(s)	263, 770, 1160, 1331, 1358, 1791
AfiI	CCNNNNNNNGG	9 cut(s)	38, 228, 333, 859, 886, 1257, 2188, 2250, 2553
AflII	CTTAAG	1 cut(s)	994
AflIII	ACRYGT	3 cut(s)	1047, 1353, 1707
AgsI	TTSAA	7 cut(s)	349, 639, 1177, 1190, 1578, 1994, 2141
AhdI	GACNNNNNGTC	1 cut(s)	1423
AjnI	CCWGG	3 cut(s)	1600, 1781, 2308
AluBI	AGCT	7 cut(s)	603, 779, 1739, 1745, 2118, 2171, 2389
AluI	AGCT	7 cut(s)	603, 779, 1739, 1745, 2118, 2171, 2389
Alw21I	GWGCWC	2 cut(s)	1624, 1699
Alw26I	GTCTC	2 cut(s)	203, 489
Alw44I	GTGCAC	1 cut(s)	1695
AlwI	GGATC	3 cut(s)	545, 1636, 2274
Ama87I	CYCGRG	2 cut(s)	772, 2552
Aor13HI	TCCGGA	1 cut(s)	2243
AoxI	GGCC	6 cut(s)	40, 195, 324, 939, 1886, 1951
ApaLI	GTGCAC	1 cut(s)	1695
ApeKI	GCWGC	6 cut(s)	524, 1199, 1610, 1919, 2168, 2386
Asp700I	GAANNNNTTC	2 cut(s)	1181, 1961
AspLEI	GCGC	3 cut(s)	1210, 1345, 1480
AspS9I	GGNCC	2 cut(s)	41, 231
AsuC2I	CCSGG	4 cut(s)	229, 1363, 2553, 2554
AsuHPI	GGTGA	3 cut(s)	418, 628, 1484
AvaI	CYCGRG	2 cut(s)	772, 2552
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	1699
BanI	GGYRCC	1 cut(s)	289
BarI	GAAGNNNNNNTAC	2 cut(s)	1313, 1345
BbsI	GAAGAC	1 cut(s)	1873
Bbv12I	GWGCWC	2 cut(s)	1624, 1699
BbvI	GCAGC	6 cut(s)	511, 1186, 1597, 1931, 2180, 2398
BccI	CCATC	5 cut(s)	473, 650, 905, 1933, 2679
BceAI	ACGGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	6 cut(s)	284, 318, 457, 491, 1225, 1259
BciT130I	CCWGG	3 cut(s)	1602, 1783, 2310
BciVI	GTATCC	1 cut(s)	1298
BclI	TGATCA	1 cut(s)	1440
BcnI	CCSGG	4 cut(s)	229, 1363, 2553, 2554
BcoDI	GTCTC	2 cut(s)	203, 489
BfaI	CTAG	3 cut(s)	600, 1740, 2205
BfmI	CTRYAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	994
BfuAI	ACCTGC	2 cut(s)	2005, 2093
BfuI	GTATCC	1 cut(s)	1298
BisI	GCNGC	8 cut(s)	154, 525, 665, 1200, 1611, 1920, 2169, 2387
BlsI	GCNGC	8 cut(s)	155, 526, 666, 1201, 1612, 1921, 2170, 2388
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	7 cut(s)	229, 1363, 1602, 1783, 2310, 2553, 2554
Bme18I	GGWCC	1 cut(s)	231
BmeRI	GACNNNNNGTC	1 cut(s)	1423
BmeT110I	CYCGRG	2 cut(s)	772, 2552
BmgT120I	GGNCC	2 cut(s)	41, 231
BmiI	GGNNCC	5 cut(s)	43, 291, 597, 2193, 2669
BmrFI	CCNGG	7 cut(s)	229, 1363, 1602, 1783, 2310, 2553, 2554
BmrI	ACTGGG	1 cut(s)	1625
BmsI	GCATC	4 cut(s)	185, 451, 553, 1465
BmuI	ACTGGG	1 cut(s)	1625
BpiI	GAAGAC	1 cut(s)	1873
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpmI	CTGGAG	3 cut(s)	974, 1337, 2379
Bpu10I	CCTNAGC	1 cut(s)	1629
BpuMI	CCSGG	4 cut(s)	229, 1363, 2553, 2554
BsaAI	YACGTR	2 cut(s)	261, 1333
BsaHI	GRCGYC	1 cut(s)	1465
BsaI	GGTCTC	2 cut(s)	203, 489
BsaJI	CCNNGG	5 cut(s)	402, 411, 1291, 1468, 2552
BsaWI	WCCGGW	1 cut(s)	2243
BsaXI	ACNNNNNCTCC	2 cut(s)	1343, 1373
Bsc4I	CCNNNNNNNGG	9 cut(s)	38, 228, 333, 859, 886, 1257, 2188, 2250, 2553
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	7 cut(s)	853, 1144, 1450, 1540, 1620, 1704, 2523
Bse3DI	GCAATG	4 cut(s)	747, 1137, 1905, 2268
BseAI	TCCGGA	1 cut(s)	2243
BseBI	CCWGG	3 cut(s)	1602, 1783, 2310
BseDI	CCNNGG	5 cut(s)	402, 411, 1291, 1468, 2552
BseGI	GGATG	3 cut(s)	176, 1864, 1944
BseLI	CCNNNNNNNGG	9 cut(s)	38, 228, 333, 859, 886, 1257, 2188, 2250, 2553
BseMI	GCAATG	4 cut(s)	747, 1137, 1905, 2268
BseMII	CTCAG	3 cut(s)	686, 857, 2642
BseNI	ACTGG	7 cut(s)	853, 1144, 1450, 1540, 1620, 1704, 2523
BseRI	GAGGAG	3 cut(s)	1181, 2492, 2495
BseSI	GKGCMC	1 cut(s)	1699
BseXI	GCAGC	6 cut(s)	511, 1186, 1597, 1931, 2180, 2398
BsgI	GTGCAG	3 cut(s)	147, 1596, 1983
Bsh1236I	CGCG	1 cut(s)	1208
BshFI	GGCC	6 cut(s)	42, 197, 326, 941, 1888, 1953
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	1624, 1699
BsiHKCI	CYCGRG	2 cut(s)	772, 2552
BsiSI	CCGG	7 cut(s)	150, 194, 229, 938, 1363, 2244, 2553
BslFI	GGGAC	3 cut(s)	2535, 2569, 2701
BslI	CCNNNNNNNGG	9 cut(s)	38, 228, 333, 859, 886, 1257, 2188, 2250, 2553
BsmAI	GTCTC	2 cut(s)	203, 489
BsmFI	GGGAC	3 cut(s)	2535, 2569, 2701
BsmI	GAATGC	4 cut(s)	1132, 1268, 1815, 2535
BsnI	GGCC	6 cut(s)	42, 197, 326, 941, 1888, 1953
Bso31I	GGTCTC	2 cut(s)	203, 489
BsoBI	CYCGRG	2 cut(s)	772, 2552
Bsp1286I	GDGCHC	2 cut(s)	1624, 1699
Bsp13I	TCCGGA	1 cut(s)	2243
Bsp143I	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
Bsp19I	CCATGG	2 cut(s)	1291, 1468
BspANI	GGCC	6 cut(s)	42, 197, 326, 941, 1888, 1953
BspCNI	CTCAG	3 cut(s)	687, 856, 2643
BspEI	TCCGGA	1 cut(s)	2243
BspFNI	CGCG	1 cut(s)	1208
BspHI	TCATGA	1 cut(s)	1587
BspLI	GGNNCC	5 cut(s)	43, 291, 597, 2193, 2669
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	2 cut(s)	2005, 2093
BspPI	GGATC	3 cut(s)	545, 1636, 2274
BspT107I	GGYRCC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	994
BspTNI	GGTCTC	2 cut(s)	203, 489
BsrBI	CCGCTC	2 cut(s)	219, 1108
BsrDI	GCAATG	4 cut(s)	747, 1137, 1905, 2268
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	7 cut(s)	853, 1144, 1450, 1540, 1620, 1704, 2523
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	402, 411, 1291, 1468, 2552
BssMI	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
BssNI	GRCGYC	1 cut(s)	1465
BssT1I	CCWWGG	2 cut(s)	1291, 1468
Bst2UI	CCWGG	3 cut(s)	1602, 1783, 2310
Bst4CI	ACNGT	5 cut(s)	412, 803, 922, 1182, 1378
BstACI	GRCGYC	1 cut(s)	1465
BstAFI	CTTAAG	1 cut(s)	994
BstAPI	GCANNNNNTGC	2 cut(s)	746, 1916
BstBAI	YACGTR	2 cut(s)	261, 1333
BstC8I	GCNNGC	4 cut(s)	151, 466, 1248, 2120
BstDEI	CTNAG	5 cut(s)	695, 843, 1629, 1844, 2651
BstDSI	CCRYGG	3 cut(s)	411, 1291, 1468
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	3 cut(s)	176, 1864, 1944
BstFNI	CGCG	1 cut(s)	1208
BstHHI	GCGC	3 cut(s)	1210, 1345, 1480
BstKTI	GATC	6 cut(s)	540, 1443, 1644, 2008, 2269, 2646
BstMAI	GTCTC	2 cut(s)	203, 489
BstMBI	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
BstNI	CCWGG	3 cut(s)	1602, 1783, 2310
BstNSI	RCATGY	5 cut(s)	632, 1051, 1357, 1711, 1926
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	7 cut(s)	227, 1361, 1600, 1781, 2308, 2551, 2552
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	1699
BstSNI	TACGTA	1 cut(s)	261
BstUI	CGCG	1 cut(s)	1208
BstV1I	GCAGC	6 cut(s)	511, 1186, 1597, 1931, 2180, 2398
BstV2I	GAAGAC	1 cut(s)	1873
BstX2I	RGATCY	2 cut(s)	1641, 2266
BstYI	RGATCY	2 cut(s)	1641, 2266
BsuI	GTATCC	1 cut(s)	1298
BsuRI	GGCC	6 cut(s)	42, 197, 326, 941, 1888, 1953
BtgI	CCRYGG	3 cut(s)	411, 1291, 1468
BtgZI	GCGATG	1 cut(s)	2349
BtsCI	GGATG	3 cut(s)	176, 1864, 1944
BtsI	GCAGTG	1 cut(s)	2604
BtsIMutI	CAGTG	5 cut(s)	1002, 1443, 1613, 1697, 2604
BveI	ACCTGC	2 cut(s)	2005, 2093
Cac8I	GCNNGC	4 cut(s)	151, 466, 1248, 2120
CciI	TCATGA	1 cut(s)	1587
CfoI	GCGC	3 cut(s)	1210, 1345, 1480
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	41, 231
Cfr9I	CCCGGG	1 cut(s)	2552
CseI	GACGC	3 cut(s)	1103, 1473, 2598
CsiI	ACCWGGT	1 cut(s)	2308
Csp6I	GTAC	6 cut(s)	262, 769, 1159, 1330, 1357, 1790
CviQI	GTAC	6 cut(s)	262, 769, 1159, 1330, 1357, 1790
DdeI	CTNAG	5 cut(s)	695, 843, 1629, 1844, 2651
DpnI	GATC	6 cut(s)	539, 1442, 1643, 2007, 2268, 2645
DpnII	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
DraI	TTTAAA	1 cut(s)	2680
DriI	GACNNNNNGTC	1 cut(s)	1423
EaeI	YGGCCR	1 cut(s)	195
Eam1105I	GACNNNNNGTC	1 cut(s)	1423
EciI	GGCGGA	1 cut(s)	869
Eco105I	TACGTA	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	1291, 1468
Eco147I	AGGCCT	2 cut(s)	1888, 1953
Eco31I	GGTCTC	2 cut(s)	203, 489
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	341, 1284
Eco88I	CYCGRG	2 cut(s)	772, 2552
Eco91I	GGTNACC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	406
EcoRI	GAATTC	2 cut(s)	511, 2136
EcoRII	CCWGG	3 cut(s)	1600, 1781, 2308
EcoT14I	CCWWGG	2 cut(s)	1291, 1468
ErhI	CCWWGG	2 cut(s)	1291, 1468
FaqI	GGGAC	3 cut(s)	2535, 2569, 2701
FbaI	TGATCA	1 cut(s)	1440
FblI	GTMKAC	1 cut(s)	2025
Fnu4HI	GCNGC	8 cut(s)	154, 525, 665, 1200, 1611, 1920, 2169, 2387
FokI	GGATG	3 cut(s)	163, 1871, 1951
Fsp4HI	GCNGC	8 cut(s)	154, 525, 665, 1200, 1611, 1920, 2169, 2387
FspBI	CTAG	3 cut(s)	600, 1740, 2205
GlaI	GCGC	3 cut(s)	1209, 1344, 1479
GluI	GCNGC	8 cut(s)	154, 525, 665, 1200, 1611, 1920, 2169, 2387
GsuI	CTGGAG	3 cut(s)	974, 1337, 2379
HaeIII	GGCC	6 cut(s)	42, 197, 326, 941, 1888, 1953
HapII	CCGG	7 cut(s)	150, 194, 229, 938, 1363, 2244, 2553
HgaI	GACGC	3 cut(s)	1103, 1473, 2598
HhaI	GCGC	3 cut(s)	1210, 1345, 1480
Hin1I	GRCGYC	1 cut(s)	1465
Hin6I	GCGC	3 cut(s)	1208, 1343, 1478
HinP1I	GCGC	3 cut(s)	1208, 1343, 1478
HincII	GTYRAC	3 cut(s)	1045, 1705, 2473
HindII	GTYRAC	3 cut(s)	1045, 1705, 2473
HinfI	GANTC	6 cut(s)	274, 337, 364, 900, 1558, 2247
HpaII	CCGG	7 cut(s)	150, 194, 229, 938, 1363, 2244, 2553
HphI	GGTGA	3 cut(s)	418, 628, 1484
Hpy166II	GTNNAC	6 cut(s)	1045, 1351, 1697, 1705, 2026, 2473
Hpy8I	GTNNAC	6 cut(s)	1045, 1351, 1697, 1705, 2026, 2473
Hpy99I	CGWCG	2 cut(s)	1086, 1166
HpyAV	CCTTC	8 cut(s)	60, 316, 967, 1856, 1943, 2094, 2591, 2658
HpyCH4III	ACNGT	5 cut(s)	412, 803, 922, 1182, 1378
HpyCH4IV	ACGT	3 cut(s)	260, 1332, 1901
HpyF3I	CTNAG	5 cut(s)	695, 843, 1629, 1844, 2651
HpySE526I	ACGT	3 cut(s)	260, 1332, 1901
Hsp92I	GRCGYC	1 cut(s)	1465
HspAI	GCGC	3 cut(s)	1208, 1343, 1478
Kpn2I	TCCGGA	1 cut(s)	2243
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	1440
Kzo9I	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
LmnI	GCTCC	7 cut(s)	224, 595, 608, 1105, 1619, 2191, 2394
Lsp1109I	GCAGC	6 cut(s)	511, 1186, 1597, 1931, 2180, 2398
LweI	GCATC	4 cut(s)	185, 451, 553, 1465
MabI	ACCWGGT	1 cut(s)	2308
MaeI	CTAG	3 cut(s)	600, 1740, 2205
MaeII	ACGT	3 cut(s)	260, 1332, 1901
MaeIII	GTNAC	7 cut(s)	328, 406, 803, 916, 1897, 2207, 2367
MalI	GATC	6 cut(s)	539, 1442, 1643, 2007, 2268, 2645
MbiI	CCGCTC	2 cut(s)	219, 1108
MboI	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
MfeI	CAATTG	1 cut(s)	2186
MflI	RGATCY	2 cut(s)	1641, 2266
MhlI	GDGCHC	2 cut(s)	1624, 1699
MlyI	GAGTC	3 cut(s)	268, 894, 2241
MmeI	TCCRAC	3 cut(s)	515, 1051, 2300
MreI	CGCCGGCG	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	2243
MroNI	GCCGGC	1 cut(s)	149
MroXI	GAANNNNTTC	2 cut(s)	1181, 1961
MseI	TTAA	8 cut(s)	429, 995, 1010, 1398, 1482, 1566, 1752, 2679
MslI	CAYNNNNRTG	8 cut(s)	269, 372, 651, 987, 1229, 1296, 1473, 1650
MspCI	CTTAAG	1 cut(s)	994
MspI	CCGG	7 cut(s)	150, 194, 229, 938, 1363, 2244, 2553
MspR9I	CCNGG	7 cut(s)	229, 1363, 1602, 1783, 2310, 2553, 2554
MunI	CAATTG	1 cut(s)	2186
Mva1269I	GAATGC	4 cut(s)	1132, 1268, 1815, 2535
MvaI	CCWGG	3 cut(s)	1602, 1783, 2310
MvnI	CGCG	1 cut(s)	1208
NaeI	GCCGGC	1 cut(s)	151
NciI	CCSGG	4 cut(s)	229, 1363, 2553, 2554
NcoI	CCATGG	2 cut(s)	1291, 1468
NdeII	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
NgoMIV	GCCGGC	1 cut(s)	149
NlaIV	GGNNCC	5 cut(s)	43, 291, 597, 2193, 2669
NmuCI	GTSAC	5 cut(s)	328, 406, 803, 2207, 2367
NspI	RCATGY	5 cut(s)	632, 1051, 1357, 1711, 1926
PaeR7I	CTCGAG	1 cut(s)	772
PagI	TCATGA	1 cut(s)	1587
PaqCI	CACCTGC	1 cut(s)	2093
PceI	AGGCCT	2 cut(s)	1888, 1953
PciI	ACATGT	3 cut(s)	1047, 1353, 1707
PctI	GAATGC	4 cut(s)	1132, 1268, 1815, 2535
PdiI	GCCGGC	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	1181, 1961
PfeI	GAWTC	3 cut(s)	337, 364, 1558
PflFI	GACNNNGTC	1 cut(s)	1097
PflMI	CCANNNNNTGG	1 cut(s)	859
PkrI	GCNGC	8 cut(s)	155, 526, 666, 1201, 1612, 1921, 2170, 2388
PleI	GAGTC	3 cut(s)	268, 894, 2241
PpsI	GAGTC	3 cut(s)	268, 894, 2241
Ppu21I	YACGTR	2 cut(s)	261, 1333
PscI	ACATGT	3 cut(s)	1047, 1353, 1707
Psp6I	CCWGG	3 cut(s)	1600, 1781, 2308
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	3 cut(s)	1600, 1781, 2308
PspN4I	GGNNCC	5 cut(s)	43, 291, 597, 2193, 2669
PspPI	GGNCC	2 cut(s)	41, 231
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	1641, 2266
PsyI	GACNNNGTC	1 cut(s)	1097
RsaI	GTAC	6 cut(s)	263, 770, 1160, 1331, 1358, 1791
RsaNI	GTAC	6 cut(s)	262, 769, 1159, 1330, 1357, 1790
RseI	CAYNNNNRTG	8 cut(s)	269, 372, 651, 987, 1229, 1296, 1473, 1650
SaqAI	TTAA	8 cut(s)	429, 995, 1010, 1398, 1482, 1566, 1752, 2679
SatI	GCNGC	8 cut(s)	154, 525, 665, 1200, 1611, 1920, 2169, 2387
Sau3AI	GATC	6 cut(s)	537, 1440, 1641, 2005, 2266, 2643
Sau96I	GGNCC	2 cut(s)	41, 231
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	3 cut(s)	268, 894, 2241
ScrFI	CCNGG	7 cut(s)	229, 1363, 1602, 1783, 2310, 2553, 2554
SduI	GDGCHC	2 cut(s)	1624, 1699
SexAI	ACCWGGT	1 cut(s)	2308
SfaNI	GCATC	4 cut(s)	185, 451, 553, 1465
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	772
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	772
SmaI	CCCGGG	1 cut(s)	2554
SmiMI	CAYNNNNRTG	8 cut(s)	269, 372, 651, 987, 1229, 1296, 1473, 1650
SmlI	CTYRAG	2 cut(s)	772, 994
SmoI	CTYRAG	2 cut(s)	772, 994
SnaBI	TACGTA	1 cut(s)	261
SseBI	AGGCCT	2 cut(s)	1888, 1953
SspMI	CTAG	3 cut(s)	600, 1740, 2205
StuI	AGGCCT	2 cut(s)	1888, 1953
StyD4I	CCNGG	7 cut(s)	227, 1361, 1600, 1781, 2308, 2551, 2552
StyI	CCWWGG	2 cut(s)	1291, 1468
TaaI	ACNGT	5 cut(s)	412, 803, 922, 1182, 1378
TaiI	ACGT	3 cut(s)	263, 1335, 1904
TatI	WGTACW	3 cut(s)	768, 1356, 1789
TauI	GCSGC	2 cut(s)	156, 667
TfiI	GAWTC	3 cut(s)	337, 364, 1558
Tru1I	TTAA	8 cut(s)	429, 995, 1010, 1398, 1482, 1566, 1752, 2679
Tru9I	TTAA	8 cut(s)	429, 995, 1010, 1398, 1482, 1566, 1752, 2679
TscAI	CASTG	5 cut(s)	1009, 1450, 1620, 1704, 2611
TseFI	GTSAC	5 cut(s)	328, 406, 803, 2207, 2367
TseI	GCWGC	6 cut(s)	524, 1199, 1610, 1919, 2168, 2386
Tsp45I	GTSAC	5 cut(s)	328, 406, 803, 2207, 2367
TspGWI	ACGGA	1 cut(s)	2648
TspMI	CCCGGG	1 cut(s)	2552
TspRI	CASTG	5 cut(s)	1009, 1450, 1620, 1704, 2611
Tth111I	GACNNNGTC	1 cut(s)	1097
Van91I	CCANNNNNTGG	1 cut(s)	859
Vha464I	CTTAAG	1 cut(s)	994
VneI	GTGCAC	1 cut(s)	1695
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	5 cut(s)	632, 1051, 1357, 1711, 1926
XhoI	CTCGAG	1 cut(s)	772
XmaI	CCCGGG	1 cut(s)	2552
XmiI	GTMKAC	1 cut(s)	2025
XmnI	GAANNNNTTC	2 cut(s)	1181, 1961
XspI	CTAG	3 cut(s)	600, 1740, 2205
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.