Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006920

Physical Location & Seq

Genomic Coordinates Forward (+)

23067884 .. 23069176

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAGGTCCAGGAGTCCCAGTCCCGGAGCAGTTGGGCAACTCAATCAGGTGAAGGAGCCATACAACCTTGCCAGAAAGAACCCGTTTTTCAATGGCCTTTTGAGGCTTGATGATCAGAATCCTAGCCCTCCTACTGTTGATTTTCCGGCAATCCCTGGAAGGCGGAACATTTCTCGTACCATGTCGGATATTGGTAACACTCTCACAAGAAAAGGGCAGGTTCCATTCTCTGATGATAGTGTTCTTGAGCCCTTTGAAAGGGCGAAACTTGGTAAAACTGCTTCATTTGCATTTGCTAATGTTCAGCCAGTTTCTAGCTTTGATTTGGGGAAATTAAATGAGCCCGCCATTGAAGCAAATGATCGTAAGCATGGTAGAGTAAATGGTCTAGCAAGTGTCACAAGTGGGAAATCATTCAGGGTGAAAAGAAGGAAAGGAAACCTGTCCACAGTTTCACTTCCTCAGTCTGCTGCATCGTTTTATAATGGGGACTCGCCGCAATTTGAAATTGTTGCATCGTGTCCAAGCATGTACAAGCTTAATTTGTTTCTTAAAGCCAGAAAGGATGAAGTTAAGGCCGGTGTCGCGGGAAAATTCTTACATGTTGTAATGGCTCAAGATGTTGCTGGTTGGATCTGTTGCTTCAACCATCAGTTATGCCTTCTACCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

DHHA2

Protein Analysis

225

Amino Acids

24.54

Weight (kDa)

9.75

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006920)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11620
malus_domestica	MD05G1261900.v1.1 MD10G1240200.v1.1
prunus_persica	Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1
pyrus_communis	pycom05g24560 pycom10g20080 pycom10g20090
rosa_chinensis	RchiOBHm_Chr5g0018641
rosa_laevigata	RLG00000032385
rosa_multiflora	Rmu_co8466739.1_g000001 Rmu_sc0001848.1_g000002 Rmu_sc0008501.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059110
rosa_rugosa	Rorug05G0045600
rosa_samantha	Rh5AG136800 Rh5BG135600 Rh5CG147500 Rh5DG136800
rosa_wichuraiana	Rw5G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	208
AccII	CGCG	1 cut(s)	587
AciI	CCGC	4 cut(s)	163, 345, 497, 587
AclWI	GGATC	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	593
AfaI	GTAC	2 cut(s)	178, 533
AfiI	CCNNNNNNNGG	2 cut(s)	23, 258
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	5 cut(s)	91, 257, 353, 506, 646
AjnI	CCWGG	2 cut(s)	8, 154
AluBI	AGCT	2 cut(s)	318, 538
AluI	AGCT	2 cut(s)	318, 538
AlwI	GGATC	1 cut(s)	641
AoxI	GGCC	2 cut(s)	94, 576
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	593
Asp700I	GAANNNNTTC	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	61, 433
AvaII	GGWCC	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	252, 345
BarI	GAAGNNNNNNTAC	4 cut(s)	44, 76, 265, 297
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	657
BciT130I	CCWGG	2 cut(s)	10, 156
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	3 cut(s)	123, 315, 389
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	471, 497
BlsI	GCNGC	2 cut(s)	472, 498
Bme1390I	CCNGG	3 cut(s)	10, 24, 156
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	57, 222
BmrFI	CCNGG	3 cut(s)	10, 24, 156
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	482, 524
BmuI	ACTGGG	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	266, 600
BpuMI	CCSGG	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 258
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	18, 308
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	10, 156
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	23, 258
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	18, 308
BseXI	GCAGC	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	96, 578
BsiSI	CCGG	3 cut(s)	24, 146, 579
BslFI	GGGAC	2 cut(s)	6, 503
BslI	CCNNNNNNNGG	2 cut(s)	23, 258
BsmFI	GGGAC	2 cut(s)	6, 503
BsnI	GGCC	2 cut(s)	96, 578
Bsp1286I	GDGCHC	2 cut(s)	252, 345
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	3 cut(s)	112, 361, 633
BspACI	CCGC	4 cut(s)	163, 345, 497, 587
BspANI	GGCC	2 cut(s)	96, 578
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	2 cut(s)	57, 222
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	641
BsrFI	RCCGGY	1 cut(s)	578
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	18, 308
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	112, 361, 633
Bst2UI	CCWGG	2 cut(s)	10, 156
Bst4CI	ACNGT	2 cut(s)	136, 451
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	1 cut(s)	587
BstKTI	GATC	3 cut(s)	115, 364, 636
BstMBI	GATC	3 cut(s)	112, 361, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 353, 584
BstNI	CCWGG	2 cut(s)	10, 156
BstNSI	RCATGY	2 cut(s)	532, 605
BstSCI	CCNGG	3 cut(s)	8, 22, 154
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	96, 578
BtsCI	GGATG	1 cut(s)	571
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	177, 532
CviAII	CATG	4 cut(s)	181, 371, 529, 602
CviQI	GTAC	2 cut(s)	177, 532
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	3 cut(s)	114, 363, 635
DpnII	GATC	3 cut(s)	112, 361, 633
EciI	GGCGGA	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	252, 345
Eco47I	GGWCC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	8, 154
EcoT38I	GRGCYC	2 cut(s)	252, 345
FaeI	CATG	4 cut(s)	184, 374, 532, 605
FaiI	YATR	7 cut(s)	61, 182, 372, 483, 530, 603, 658
FaqI	GGGAC	2 cut(s)	6, 503
FatI	CATG	4 cut(s)	180, 370, 528, 601
FauI	CCCGC	2 cut(s)	352, 580
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	471, 497
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	2 cut(s)	252, 345
Fsp4HI	GCNGC	2 cut(s)	471, 497
FspBI	CTAG	3 cut(s)	123, 315, 389
GluI	GCNGC	2 cut(s)	471, 497
HaeIII	GGCC	2 cut(s)	96, 578
HapII	CCGG	3 cut(s)	24, 146, 579
Hin1II	CATG	4 cut(s)	184, 374, 532, 605
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	13, 118, 491
HpaII	CCGG	3 cut(s)	24, 146, 579
HphI	GGTGA	2 cut(s)	61, 433
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	3 cut(s)	117, 187, 232
Hpy188III	TCNNGA	2 cut(s)	245, 617
Hpy8I	GTNNAC	1 cut(s)	447
HpyAV	CCTTC	4 cut(s)	46, 153, 423, 671
HpyCH4III	ACNGT	2 cut(s)	136, 451
HpyCH4V	TGCA	3 cut(s)	290, 473, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 353, 584
HpyF3I	CTNAG	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	184, 374, 532, 605
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	112, 361, 633
LmnI	GCTCC	2 cut(s)	26, 55
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	482, 524
MaeI	CTAG	3 cut(s)	123, 315, 389
MaeIII	GTNAC	2 cut(s)	194, 397
MalI	GATC	3 cut(s)	114, 363, 635
MboI	GATC	3 cut(s)	112, 361, 633
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	2 cut(s)	252, 345
MluCI	AATT	5 cut(s)	332, 500, 507, 541, 593
MlyI	GAGTC	2 cut(s)	22, 485
MmeI	TCCRAC	2 cut(s)	165, 611
MnlI	CCTC	3 cut(s)	96, 138, 471
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	4 cut(s)	335, 540, 552, 573
MspI	CCGG	3 cut(s)	24, 146, 579
MspR9I	CCNGG	3 cut(s)	10, 24, 156
MvaI	CCWGG	2 cut(s)	10, 156
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	3 cut(s)	287, 353, 584
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	112, 361, 633
NlaIII	CATG	4 cut(s)	184, 374, 532, 605
NlaIV	GGNNCC	2 cut(s)	57, 222
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	2 cut(s)	532, 605
PciI	ACATGT	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	118
PfoI	TCCNGGA	2 cut(s)	8, 22
PkrI	GCNGC	2 cut(s)	472, 498
PleI	GAGTC	2 cut(s)	21, 485
PpsI	GAGTC	2 cut(s)	21, 485
PscI	ACATGT	1 cut(s)	601
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	8, 154
PspGI	CCWGG	2 cut(s)	8, 154
PspN4I	GGNNCC	2 cut(s)	57, 222
PspPI	GGNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	2 cut(s)	178, 533
RsaNI	GTAC	2 cut(s)	177, 532
SaqAI	TTAA	4 cut(s)	335, 540, 552, 573
SatI	GCNGC	2 cut(s)	471, 497
Sau3AI	GATC	3 cut(s)	112, 361, 633
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	2 cut(s)	22, 485
ScrFI	CCNGG	3 cut(s)	10, 24, 156
SduI	GDGCHC	2 cut(s)	252, 345
SetI	ASST	8 cut(s)	8, 51, 69, 222, 320, 444, 540, 670
SfaNI	GCATC	2 cut(s)	482, 524
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	2 cut(s)	245, 615
SmoI	CTYRAG	2 cut(s)	245, 615
Sse9I	AATT	5 cut(s)	332, 500, 507, 541, 593
SsiI	CCGC	4 cut(s)	163, 345, 497, 587
SspMI	CTAG	3 cut(s)	123, 315, 389
StyD4I	CCNGG	3 cut(s)	8, 22, 154
TaaI	ACNGT	2 cut(s)	136, 451
TasI	AATT	5 cut(s)	332, 500, 507, 541, 593
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	4 cut(s)	335, 540, 552, 573
Tru9I	TTAA	4 cut(s)	335, 540, 552, 573
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	273, 582
VpaK11BI	GGWCC	1 cut(s)	6
XagI	CCTNNNNNAGG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	593
XceI	RCATGY	2 cut(s)	532, 605
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	3 cut(s)	123, 315, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.