Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006920

Physical Location & Seq

Genomic Coordinates Forward (+)

23069308 .. 23072700

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20090.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGATTGATCTGTCATATTATCGATCTATTTGGGAGTCTTAAAGTAGTTCTATTAAATGGCCACAAGCTCCCAGCCAAGCAAGAGGCATTGAAAGAGGCTGTAGTGGAAAATTTCAATTGCAAACAGGGAGAATCTGTATATCCCTGGGTCAAGAGTGTTACTGTAGCAGAGGATAGCTCATGCTGTACAGTTGTTGCTGAGAAGTTTTCTCTGATTTCACCTGAGATTTTGGCTGGACAAGGATTCAGTAGACTTTTGTTAGCTGCCATCCTTTTAGACTCCACAAACTTGTGCAGTTCTCATTGTTCAACCAAGGATAAGTACATGTCTGCACTGTTAATCCATGGTGCTGGTCGCTTTGGATGCAATGGCCTTTACCAGTTATTGAGATACAAAATGTACAATGTATCTAATCTCAAGATTAGTGATATATTGCGCAAGGATTTCAAAAAGTGGACAAGAGTAGGTAAACCGGAGGGTCCTGGTGCTAGAACATCACAAATCGGGATGAGTTCCACTGGAATGCCAATTGCACAGCTTCTTGAACATGAGAACGCCTTAGTGCGTGAAATTAAAAATTTCCAACAGATGGAGAAACTTCGGCTTCTCGTGGTTGTTTCTGGGTATTATGATTCGAAAAAGAACTTCAAGAGAGAGATCCTAGTGTCAGCGGAGTCAGTGGAGCTCATGAAGAATCTGCTGTTTTTCTTCAATTCAGGTGCTTCTGAACTGCCTCTCAAAGCAATCCATCAGCCAGGTCTCGGTGAGGAGGAGATGCAAGTATTTGAGATTGACAAGGTCACATCAAGAAAGACCATTGAGCGCCTCTTAGAAGAATTTGGTGGGACTTCGAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

DHHA2

Protein Analysis

288

Amino Acids

32.03

Weight (kDa)

8.85

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006920)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11620
malus_domestica	MD05G1261900.v1.1 MD10G1240200.v1.1
prunus_persica	Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1
pyrus_communis	pycom05g24560 pycom10g20080 pycom10g20090
rosa_chinensis	RchiOBHm_Chr5g0018641
rosa_laevigata	RLG00000032385
rosa_multiflora	Rmu_co8466739.1_g000001 Rmu_sc0001848.1_g000002 Rmu_sc0008501.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059110
rosa_rugosa	Rorug05G0045600
rosa_samantha	Rh5AG136800 Rh5BG135600 Rh5CG147500 Rh5DG136800
rosa_wichuraiana	Rw5G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	253
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	3 cut(s)	112, 580, 839
AfaI	GTAC	3 cut(s)	190, 326, 404
AfiI	CCNNNNNNNGG	2 cut(s)	592, 764
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	7 cut(s)	94, 118, 312, 451, 548, 652, 715
AjnI	CCWGG	3 cut(s)	146, 484, 757
AluBI	AGCT	5 cut(s)	70, 180, 266, 541, 688
AluI	AGCT	5 cut(s)	70, 180, 266, 541, 688
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	1 cut(s)	655
AoxI	GGCC	2 cut(s)	61, 373
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	112, 580, 839
AspLEI	GCGC	2 cut(s)	441, 828
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	213, 779
AsuII	TTCGAA	2 cut(s)	638, 854
AvaII	GGWCC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	690
BauI	CACGAG	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	278, 586, 759
BciT130I	CCWGG	3 cut(s)	148, 486, 759
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	2 cut(s)	492, 665
BfmI	CTRYAG	2 cut(s)	102, 165
BfoI	RGCGCY	1 cut(s)	829
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	3 cut(s)	148, 486, 759
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	3 cut(s)	148, 486, 759
BmsI	GCATC	2 cut(s)	356, 768
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu14I	TTCGAA	2 cut(s)	638, 854
BpuEI	CTTGAG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	767
BsaJI	CCNNGG	4 cut(s)	146, 147, 315, 346
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 764
Bse1I	ACTGG	2 cut(s)	382, 526
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	3 cut(s)	148, 486, 759
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	146, 147, 315, 346
BseGI	GGATG	3 cut(s)	270, 371, 516
BseLI	CCNNNNNNNGG	2 cut(s)	592, 764
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	192, 216
BseNI	ACTGG	2 cut(s)	382, 526
BseRI	GAGGAG	2 cut(s)	785, 788
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	73
BsgI	GTGCAG	2 cut(s)	316, 318
BshFI	GGCC	2 cut(s)	63, 375
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	690
BsiSI	CCGG	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	592, 764
BsmAI	GTCTC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	63, 375
Bso31I	GGTCTC	1 cut(s)	767
Bsp119I	TTCGAA	2 cut(s)	638, 854
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp1407I	TGTACA	2 cut(s)	188, 402
Bsp143I	GATC	3 cut(s)	9, 25, 660
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	2 cut(s)	63, 375
BspCNI	CTCAG	2 cut(s)	193, 217
BspDI	ATCGAT	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	655
BspT104I	TTCGAA	2 cut(s)	638, 854
BspTNI	GGTCTC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	376
BsrGI	TGTACA	2 cut(s)	188, 402
BsrI	ACTGG	2 cut(s)	382, 526
BssECI	CCNNGG	4 cut(s)	146, 147, 315, 346
BssMI	GATC	3 cut(s)	9, 25, 660
BssSI	CACGAG	1 cut(s)	611
BssT1I	CCWWGG	2 cut(s)	315, 346
Bst2BI	CACGAG	1 cut(s)	611
Bst2UI	CCWGG	3 cut(s)	148, 486, 759
Bst4CI	ACNGT	3 cut(s)	166, 193, 339
BstAUI	TGTACA	2 cut(s)	188, 402
BstBI	TTCGAA	2 cut(s)	638, 854
BstDEI	CTNAG	4 cut(s)	201, 225, 562, 832
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	270, 371, 516
BstH2I	RGCGCY	1 cut(s)	829
BstHHI	GCGC	2 cut(s)	441, 828
BstKTI	GATC	3 cut(s)	12, 28, 663
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	3 cut(s)	9, 25, 660
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNI	CCWGG	3 cut(s)	148, 486, 759
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	3 cut(s)	146, 484, 757
BstSFI	CTRYAG	2 cut(s)	102, 165
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	660
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	660
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	63, 375
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	270, 371, 516
BtsIMutI	CAGTG	3 cut(s)	335, 519, 687
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	2 cut(s)	441, 828
Cfr13I	GGNCC	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	3 cut(s)	189, 325, 403
CviAII	CATG	5 cut(s)	183, 328, 347, 551, 691
CviQI	GTAC	3 cut(s)	189, 325, 403
DdeI	CTNAG	4 cut(s)	201, 225, 562, 832
DpnI	GATC	3 cut(s)	11, 27, 662
DpnII	GATC	3 cut(s)	9, 25, 660
EaeI	YGGCCR	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	315, 346
Eco24I	GRGCYC	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	767
Eco47I	GGWCC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	688
EcoICRI	GAGCTC	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	3 cut(s)	146, 484, 757
EcoT14I	CCWWGG	2 cut(s)	315, 346
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	2 cut(s)	315, 346
FaeI	CATG	5 cut(s)	186, 331, 350, 554, 694
FaiI	YATR	9 cut(s)	18, 142, 184, 329, 348, 434, 552, 633, 692
FatI	CATG	5 cut(s)	182, 327, 346, 550, 690
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	257, 378, 523
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	492, 665
FspI	TGCGCA	1 cut(s)	440
GlaI	GCGC	2 cut(s)	440, 827
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	829
HaeIII	GGCC	2 cut(s)	63, 375
HapII	CCGG	1 cut(s)	476
HhaI	GCGC	2 cut(s)	441, 828
Hin1II	CATG	5 cut(s)	186, 331, 350, 554, 694
Hin6I	GCGC	2 cut(s)	439, 826
HinP1I	GCGC	2 cut(s)	439, 826
HinfI	GANTC	7 cut(s)	37, 134, 246, 281, 635, 677, 697
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	2 cut(s)	213, 779
Hpy166II	GTNNAC	3 cut(s)	254, 459, 473
Hpy188I	TCNGA	2 cut(s)	216, 730
Hpy188III	TCNNGA	7 cut(s)	154, 421, 508, 545, 652, 691, 810
Hpy8I	GTNNAC	3 cut(s)	254, 459, 473
HpyCH4III	ACNGT	3 cut(s)	166, 193, 339
HpyCH4V	TGCA	6 cut(s)	123, 297, 335, 369, 536, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	4 cut(s)	201, 225, 562, 832
Hsp92II	CATG	5 cut(s)	186, 331, 350, 554, 694
HspAI	GCGC	2 cut(s)	439, 826
Kzo9I	GATC	3 cut(s)	9, 25, 660
LmnI	GCTCC	2 cut(s)	75, 685
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	356, 768
MaeI	CTAG	2 cut(s)	492, 665
MaeIII	GTNAC	2 cut(s)	160, 802
MalI	GATC	3 cut(s)	11, 27, 662
MboI	GATC	3 cut(s)	9, 25, 660
MboII	GAAGA	3 cut(s)	703, 706, 848
MfeI	CAATTG	2 cut(s)	118, 531
MflI	RGATCY	1 cut(s)	660
MhlI	GDGCHC	1 cut(s)	690
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	7 cut(s)	112, 118, 531, 573, 580, 715, 839
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	3 cut(s)	46, 275, 686
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	8 cut(s)	79, 91, 166, 472, 747, 763, 766, 839
Mox20I	TGGCCA	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	4 cut(s)	42, 56, 341, 576
MslI	CAYNNNNRTG	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	3 cut(s)	148, 486, 759
MunI	CAATTG	2 cut(s)	118, 531
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	3 cut(s)	148, 486, 759
MwoI	GCNNNNNNNGC	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	3 cut(s)	9, 25, 660
NlaIII	CATG	5 cut(s)	186, 331, 350, 554, 694
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	802
NsbI	TGCGCA	1 cut(s)	440
NspI	RCATGY	1 cut(s)	331
NspV	TTCGAA	2 cut(s)	638, 854
PagI	TCATGA	1 cut(s)	690
PasI	CCCWGGG	1 cut(s)	147
PciI	ACATGT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	4 cut(s)	134, 246, 635, 697
PflFI	GACNNNGTC	1 cut(s)	800
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	3 cut(s)	45, 275, 685
PpsI	GAGTC	3 cut(s)	45, 275, 685
PpuMI	RGGWCCY	1 cut(s)	482
PscI	ACATGT	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	146, 484, 757
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	3 cut(s)	146, 484, 757
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	482
PspPPI	RGGWCCY	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	660
PsyI	GACNNNGTC	1 cut(s)	800
RsaI	GTAC	3 cut(s)	190, 326, 404
RsaNI	GTAC	3 cut(s)	189, 325, 403
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	690
SaqAI	TTAA	4 cut(s)	42, 56, 341, 576
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	3 cut(s)	9, 25, 660
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	3 cut(s)	46, 275, 686
ScrFI	CCNGG	3 cut(s)	148, 486, 759
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	2 cut(s)	356, 768
SfcI	CTRYAG	2 cut(s)	102, 165
SfuI	TTCGAA	2 cut(s)	638, 854
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	7 cut(s)	112, 118, 531, 573, 580, 715, 839
SsiI	CCGC	1 cut(s)	674
SspMI	CTAG	2 cut(s)	492, 665
SstI	GAGCTC	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	146, 484, 757
StyI	CCWWGG	2 cut(s)	315, 346
TaaI	ACNGT	3 cut(s)	166, 193, 339
TaqI	TCGA	3 cut(s)	24, 638, 854
TasI	AATT	7 cut(s)	112, 118, 531, 573, 580, 715, 839
TatI	WGTACW	3 cut(s)	188, 324, 402
TfiI	GAWTC	4 cut(s)	134, 246, 635, 697
Tru1I	TTAA	4 cut(s)	42, 56, 341, 576
Tru9I	TTAA	4 cut(s)	42, 56, 341, 576
TscAI	CASTG	3 cut(s)	342, 526, 687
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	1 cut(s)	707
TspRI	CASTG	3 cut(s)	342, 526, 687
Tth111I	GACNNNGTC	1 cut(s)	800
Van91I	CCANNNNNTGG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	3 cut(s)	112, 580, 839
XceI	RCATGY	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	253
XspI	CTAG	2 cut(s)	492, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.