Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8466739.1

Orthogroup ID

OG0006920

Physical Location & Seq

Genomic Coordinates Reverse (-)

309 .. 1462

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8466739.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtcagatattggtcataaacagccacaagataccttattagatgtgtttgaacggttcagtccaaatgaaaaaccctttgatcgaattactccaaaggaaaaatcctcttcattccgtataaagaagaacccttttgagtttagtccagaaaagaactttgagtggtcagagaatggtaaatctgagtcctttgaattcacaaatgttcagactgtgttttgctctaacttggctactgaagaaaatgatcagcagcgtgagagtgtatctagtaatacaagtcccactgttgaaaaaacatttcgtgtgaatagaaggaaggaaaacctgtctgcagttccacttcctcagtctgcagcttcattttacaatggcaactcgccgcagttcgaaatttctgagtcatgtccaagcattaagaggcttaatcggtatctgaaagccacaaaggatgaagttaatgctggtgttccgggaagatttttacatgctgtaatagctcaagatgttcctgatgtcggatcccttgcctcaaccatcatgtatgctttctacgtgaatgaaacacataaaagtgaccatttatgcacggtgcctgtgatcaacatgaagaggtcagacataagttctcaaagcgaactcaaatggttgcttgcttcttgtcaaattgatcacatgtccttaatttttgtagatgaggtatgttctactcactacggcaatgcttgtcaagttgcttttttcttgtcaagttctattatggtgttttatggtcttccacttggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

DHHA2

Protein Analysis

263

Amino Acids

29.68

Weight (kDa)

5.74

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006920)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11620
malus_domestica	MD05G1261900.v1.1 MD10G1240200.v1.1
prunus_persica	Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1
pyrus_communis	pycom05g24560 pycom10g20080 pycom10g20090
rosa_chinensis	RchiOBHm_Chr5g0018641
rosa_laevigata	RLG00000032385
rosa_multiflora	Rmu_co8466739.1_g000001 Rmu_sc0001848.1_g000002 Rmu_sc0008501.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059110
rosa_rugosa	Rorug05G0045600
rosa_samantha	Rh5AG136800 Rh5BG135600 Rh5CG147500 Rh5DG136800
rosa_wichuraiana	Rw5G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	2 cut(s)	519, 532
AcsI	RAATTY	2 cut(s)	197, 396
AcuI	CTGAAG	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	3 cut(s)	53, 197, 296
AluBI	AGCT	2 cut(s)	362, 503
AluI	AGCT	2 cut(s)	362, 503
AlwI	GGATC	2 cut(s)	519, 532
ApeKI	GCWGC	2 cut(s)	256, 359
ApoI	RAATTY	2 cut(s)	197, 396
AsuC2I	CCSGG	1 cut(s)	477
AsuII	TTCGAA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	770
BbvI	GCAGC	2 cut(s)	268, 371
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	736
BclI	TGATCA	3 cut(s)	250, 603, 673
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	2 cut(s)	336, 357
BisI	GCNGC	3 cut(s)	257, 360, 386
BlsI	GCNGC	3 cut(s)	258, 361, 387
Bme1390I	CCNGG	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	526, 597
BmrFI	CCNGG	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	770
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	730
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	3 cut(s)	177, 365, 393
BseXI	GCAGC	2 cut(s)	268, 371
BshNI	GGYRCC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	393
Bsp143I	GATC	5 cut(s)	82, 250, 524, 603, 673
BspACI	CCGC	1 cut(s)	386
BspCNI	CTCAG	3 cut(s)	178, 364, 394
BspLI	GGNNCC	2 cut(s)	526, 597
BspMAI	CTGCAG	2 cut(s)	340, 361
BspPI	GGATC	2 cut(s)	519, 532
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	730
BssMI	GATC	5 cut(s)	82, 250, 524, 603, 673
Bst4CI	ACNGT	4 cut(s)	57, 217, 292, 595
Bst6I	CTCTTC	2 cut(s)	115, 608
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	3 cut(s)	186, 351, 402
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	5 cut(s)	85, 253, 527, 606, 676
BstMBI	GATC	5 cut(s)	82, 250, 524, 603, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNSI	RCATGY	2 cut(s)	494, 682
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	2 cut(s)	336, 357
BstV1I	GCAGC	2 cut(s)	268, 371
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	657
CviAII	CATG	5 cut(s)	408, 491, 544, 610, 679
CviJI	RGCY	6 cut(s)	25, 236, 362, 427, 446, 503
CviKI_1	RGCY	6 cut(s)	25, 236, 362, 427, 446, 503
DdeI	CTNAG	3 cut(s)	186, 351, 402
DpnI	GATC	5 cut(s)	84, 252, 526, 605, 675
DpnII	GATC	5 cut(s)	82, 250, 524, 603, 673
Eam1104I	CTCTTC	2 cut(s)	115, 608
EarI	CTCTTC	2 cut(s)	115, 608
Eco57I	CTGAAG	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	197
FaeI	CATG	5 cut(s)	411, 494, 547, 613, 682
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	5 cut(s)	407, 490, 543, 609, 678
FbaI	TGATCA	3 cut(s)	250, 603, 673
Fnu4HI	GCNGC	3 cut(s)	257, 360, 386
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	257, 360, 386
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	3 cut(s)	257, 360, 386
HapII	CCGG	1 cut(s)	476
Hin1II	CATG	5 cut(s)	411, 494, 547, 613, 682
HinfI	GANTC	2 cut(s)	188, 404
HpaII	CCGG	1 cut(s)	476
Hpy188I	TCNGA	8 cut(s)	7, 172, 187, 213, 403, 441, 524, 622
Hpy188III	TCNNGA	3 cut(s)	149, 506, 515
HpyAV	CCTTC	2 cut(s)	312, 316
HpyCH4III	ACNGT	4 cut(s)	57, 217, 292, 595
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	338, 359, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	186, 351, 402
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	5 cut(s)	411, 494, 547, 613, 682
Ksp22I	TGATCA	3 cut(s)	250, 603, 673
Kzo9I	GATC	5 cut(s)	82, 250, 524, 603, 673
LpnPI	CCDG	6 cut(s)	162, 344, 453, 489, 528, 612
Lsp1109I	GCAGC	2 cut(s)	268, 371
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	5 cut(s)	84, 252, 526, 605, 675
MboI	GATC	5 cut(s)	82, 250, 524, 603, 673
MboII	GAAGA	6 cut(s)	102, 139, 254, 492, 625, 770
MflI	RGATCY	1 cut(s)	524
MluCI	AATT	5 cut(s)	87, 197, 396, 669, 687
MlyI	GAGTC	2 cut(s)	197, 413
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	6 cut(s)	118, 360, 417, 544, 609, 694
MseI	TTAA	4 cut(s)	420, 429, 462, 686
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	5 cut(s)	82, 250, 524, 603, 673
NlaIII	CATG	5 cut(s)	411, 494, 547, 613, 682
NlaIV	GGNNCC	2 cut(s)	526, 597
NmuCI	GTSAC	1 cut(s)	578
NspI	RCATGY	2 cut(s)	494, 682
NspV	TTCGAA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	678
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	258, 361, 387
PleI	GAGTC	2 cut(s)	196, 412
PpsI	GAGTC	2 cut(s)	196, 412
Ppu21I	YACGTR	1 cut(s)	559
PscI	ACATGT	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	526, 597
PstI	CTGCAG	2 cut(s)	340, 361
PsuI	RGATCY	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	4 cut(s)	420, 429, 462, 686
SatI	GCNGC	3 cut(s)	257, 360, 386
Sau3AI	GATC	5 cut(s)	82, 250, 524, 603, 673
SchI	GAGTC	2 cut(s)	197, 413
ScrFI	CCNGG	1 cut(s)	477
SetI	ASST	7 cut(s)	38, 333, 364, 505, 561, 620, 705
SfcI	CTRYAG	2 cut(s)	336, 357
SfuI	TTCGAA	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	5 cut(s)	87, 197, 396, 669, 687
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	4 cut(s)	57, 217, 292, 595
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	2 cut(s)	85, 393
TasI	AATT	5 cut(s)	87, 197, 396, 669, 687
TauI	GCSGC	1 cut(s)	388
Tru1I	TTAA	4 cut(s)	420, 429, 462, 686
Tru9I	TTAA	4 cut(s)	420, 429, 462, 686
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	256, 359
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	6 cut(s)	84, 102, 354, 471, 579, 626
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	2 cut(s)	197, 396
XceI	RCATGY	2 cut(s)	494, 682
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.