Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008501.1

Orthogroup ID

OG0006920

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1819

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008501.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

gtaatcaggacaataccggttctagattgacagtatcagatgttgggatgagctctattgggacgtcaattgcagaacttcttgatcatgaggaatcctcagtccatgaaatcaaatattttcaacaggtggagaaacttcgtcttctcatgattgtttctgggtattatgatttgaaaaagaacttcaagagagagatcctagtgtctgctcaatcagtggagctcatgaggaatctgctgtctttcttcaattcaagtgcttcccaactacctctgaaagctatccccaagccaggtctcggagagcagatgcaagcatttgagattgacaagatcatatcaagaaagaccatcgagcggctcttggaagaatttggtgggaattcaaaaggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

DHHA2

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

6.17

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006920)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11620
malus_domestica	MD05G1261900.v1.1 MD10G1240200.v1.1
prunus_persica	Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1
pyrus_communis	pycom05g24560 pycom10g20080 pycom10g20090
rosa_chinensis	RchiOBHm_Chr5g0018641
rosa_laevigata	RLG00000032385
rosa_multiflora	Rmu_co8466739.1_g000001 Rmu_sc0001848.1_g000002 Rmu_sc0008501.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059110
rosa_rugosa	Rorug05G0045600
rosa_samantha	Rh5AG136800 Rh5BG135600 Rh5CG147500 Rh5DG136800
rosa_wichuraiana	Rw5G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	360
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	2 cut(s)	373, 384
AcyI	GRCGYC	1 cut(s)	64
AfiI	CCNNNNNNNGG	3 cut(s)	295, 301, 359
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	6 cut(s)	124, 177, 189, 252, 257, 389
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	53, 225, 283
AluI	AGCT	3 cut(s)	53, 225, 283
Alw21I	GWGCWC	2 cut(s)	55, 227
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	1 cut(s)	192
ApoI	RAATTY	2 cut(s)	373, 384
AsiGI	ACCGGT	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	55, 227
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	55, 227
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	23, 202
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BsaHI	GRCGYC	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 301, 359
Bse118I	RCCGGY	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	295, 301, 359
BseMII	CTCAG	1 cut(s)	113
BshTI	ACCGGT	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	55, 227
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	295, 301, 359
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	55, 227
Bsp143I	GATC	3 cut(s)	84, 197, 335
BspACI	CCGC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	112
BspHI	TCATGA	3 cut(s)	87, 149, 227
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	3 cut(s)	84, 197, 335
BssNI	GRCGYC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	87, 200, 338
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	3 cut(s)	84, 197, 335
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	317
CciI	TCATGA	3 cut(s)	87, 149, 227
Cfr10I	RCCGGY	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	4 cut(s)	88, 106, 150, 228
CviJI	RGCY	6 cut(s)	53, 225, 283, 294, 363, 395
CviKI_1	RGCY	6 cut(s)	53, 225, 283, 294, 363, 395
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	3 cut(s)	86, 199, 337
DpnII	GATC	3 cut(s)	84, 197, 335
Ecl136II	GAGCTC	2 cut(s)	53, 225
Eco24I	GRGCYC	2 cut(s)	55, 227
Eco31I	GGTCTC	1 cut(s)	304
Eco53kI	GAGCTC	2 cut(s)	53, 225
EcoICRI	GAGCTC	2 cut(s)	53, 225
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	2 cut(s)	55, 227
FaeI	CATG	4 cut(s)	91, 109, 153, 231
FaiI	YATR	6 cut(s)	89, 107, 151, 170, 229, 340
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	4 cut(s)	87, 105, 149, 227
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	2 cut(s)	55, 227
Fsp4HI	GCNGC	1 cut(s)	361
FspBI	CTAG	2 cut(s)	23, 202
GluI	GCNGC	1 cut(s)	361
HapII	CCGG	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	91, 109, 153, 231
HinfI	GANTC	2 cut(s)	94, 234
HpaII	CCGG	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	39, 278, 304
Hpy188III	TCNNGA	8 cut(s)	7, 23, 82, 88, 150, 189, 228, 344
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	73, 315
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	4 cut(s)	91, 109, 153, 231
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	84, 197, 335
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	5 cut(s)	30, 112, 146, 281, 308
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	2 cut(s)	23, 202
MaeII	ACGT	1 cut(s)	64
MalI	GATC	3 cut(s)	86, 199, 337
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	3 cut(s)	84, 197, 335
MboII	GAAGA	3 cut(s)	136, 240, 382
MfeI	CAATTG	1 cut(s)	68
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	55, 227
MluCI	AATT	4 cut(s)	68, 252, 373, 384
MnlI	CCTC	4 cut(s)	84, 108, 224, 284
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	296
NdeII	GATC	3 cut(s)	84, 197, 335
NlaIII	CATG	4 cut(s)	91, 109, 153, 231
PagI	TCATGA	3 cut(s)	87, 149, 227
PfeI	GAWTC	2 cut(s)	94, 234
PinAI	ACCGGT	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	362
Psp124BI	GAGCTC	2 cut(s)	55, 227
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	197
SacI	GAGCTC	2 cut(s)	55, 227
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	3 cut(s)	84, 197, 335
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	55, 227
SetI	ASST	7 cut(s)	55, 67, 131, 227, 276, 285, 300
SfaNI	GCATC	1 cut(s)	302
Sse9I	AATT	4 cut(s)	68, 252, 373, 384
SsiI	CCGC	1 cut(s)	360
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	23, 202
SstI	GAGCTC	2 cut(s)	55, 227
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	356
TasI	AATT	4 cut(s)	68, 252, 373, 384
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	94, 234
TscAI	CASTG	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	224
XapI	RAATTY	2 cut(s)	373, 384
XbaI	TCTAGA	1 cut(s)	22
XspI	CTAG	2 cut(s)	23, 202
ZraI	GACGTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.