Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006920

Physical Location & Seq

Genomic Coordinates Reverse (-)

13320302 .. 13325201

Gene Structure 4900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG147500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGTCAGATATTGGTCATAAACAGCCACAAGATACCTTATTAGATGTGTTTGAACGGTTCAGTCCAAATGAAAAACCCTTTGATCGAATTACTCCAAAGGAAAAATCCTCTTCATTCAGTATAAAGAAGAACCCTTTTGAGTTTAGTCCAGAAAAGAACTTTGAGTGGTCAGAGAATGGTAAATCTGAGTCCTTTGAATTCACAAATGTTCAGACTGTGTTTTGCTCTAACTTGGCTACTGAAGAAAATGATCAGCAGCGTGAGAGTGTATCTAGTAATACAAGTCCCACTGTTGAAAAAACATTTCGTGTGAATAGAAGGAAGGAAAACCTGTCTGCAGTTCCACTTCCTCAGTCTGCAGCTTCATTTTACAATGGCAACTCGCCGCAGTTCGAAATTTCTGAGTCATGTCCAAGCATTAAGAGGCTTAATCGGTATCTGAAAGCCACAAAGGATGAAGTTAATGCTGGTGTTCCGGGAAGATTTTTACATGCTGTAATAGCTCAAGATGTTCCTGATGTCGGATCCCTTGCCTCAACCATCATGTATGCTTTCTACGTGAATGAAACACATAAAAGTGACCATTTATGCACGGTGCCTGTGATCAACATGAAGAGGTCAGACATAAGTTCTCAAAGCGAACTCAAATGGTTGCTTGCTTCTTGTCAAATTGATCACATGTCCTTAATTTTTGTAGATGAGATTGATCTGTCATATTATGATCTATTTGGGAGTCTTAAACTAGTTCTACTAAATGGCTACAAGCTCCCAACCAAGCAAGAGGCATTGAAAGATGCAGTAGTTGAAATTTTCAATTGCGGAAAGGGTGACTCTGTATACCCCTGGGTTGACACTGTTACTGTAGGACAGGACAGCTCATGCTGTACTCCTATCGCTGAGAAATTTGCGCTGCGCTCACCTGAGATTTTGGCTGGACATGGATTCAGTAGATTTTTGTTAGCTGCCATCCTCTTAGATTCTGCAAACTTGAGCAGTTCTAATTGTTCCATCAAAGATAAATACATGGCTGCAATGCTAATCCATGGTGCTGGTCGCTTTGGATGTGATGGTCTTTACCAGTTATTGAGATACAAGATGTATGATGTAACTGGTCTCAAAGTAGCTGATATATTGCGCAAGGATTTCAAAAAGTGGACACAAGTAGGTAATCAGGACAATACCGGTTCTAGATTGACAGTATCATATGTTGGGATGAGTTCTATTGGGACGTCAATTTCAGAACTTCTTGATCATGAGGAATCCCCAGTCCATGAAATCAAATATTTTCAACAGAGAGATCCTAGTGTCTGCTCAATCAGTGGAGCTCATGAGGAATCTGCTGTCTTTCTTCAATTCAAGTGCTTCCCAACTACCTCTGAAAGCTATCCCCAAGCCAGGTTAGAATTGCTTCAATTCTCTGCAGAACATGGACTTCAGTTTCTGATGGTTAGCAAAATTGCAATTATAGCCCCACTTGCAAGTGTCATGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

DHHA2

Protein Analysis

498

Amino Acids

55.68

Weight (kDa)

5.51

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006920)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11620
malus_domestica	MD05G1261900.v1.1 MD10G1240200.v1.1
prunus_persica	Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1
pyrus_communis	pycom05g24560 pycom10g20080 pycom10g20090
rosa_chinensis	RchiOBHm_Chr5g0018641
rosa_laevigata	RLG00000032385
rosa_multiflora	Rmu_co8466739.1_g000001 Rmu_sc0001848.1_g000002 Rmu_sc0008501.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059110
rosa_rugosa	Rorug05G0045600
rosa_samantha	Rh5AG136800 Rh5BG135600 Rh5CG147500 Rh5DG136800
rosa_wichuraiana	Rw5G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1232
Acc16I	TGCGCA	1 cut(s)	1136
AccB1I	GGYRCC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	2 cut(s)	386, 819
AclWI	GGATC	3 cut(s)	519, 532, 1292
AcsI	RAATTY	4 cut(s)	197, 396, 807, 902
AcuI	CTGAAG	2 cut(s)	261, 1418
AcyI	GRCGYC	1 cut(s)	1229
AfaI	GTAC	1 cut(s)	886
AfiI	CCNNNNNNNGG	2 cut(s)	521, 1395
AflIII	ACRYGT	1 cut(s)	678
AgeI	ACCGGT	1 cut(s)	1181
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	842, 1394
AluBI	AGCT	8 cut(s)	362, 503, 766, 876, 962, 1124, 1325, 1383
AluI	AGCT	8 cut(s)	362, 503, 766, 876, 962, 1124, 1325, 1383
Alw21I	GWGCWC	1 cut(s)	1327
Alw26I	GTCTC	1 cut(s)	1118
AlwI	GGATC	3 cut(s)	519, 532, 1292
AlwNI	CAGNNNCTG	1 cut(s)	1441
ApeKI	GCWGC	5 cut(s)	256, 359, 910, 962, 1028
ApoI	RAATTY	4 cut(s)	197, 396, 807, 902
AsiGI	ACCGGT	1 cut(s)	1181
Asp700I	GAANNNNTTC	1 cut(s)	1407
AspLEI	GCGC	3 cut(s)	910, 915, 1137
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	839, 909
AsuII	TTCGAA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	1327
Bbv12I	GWGCWC	1 cut(s)	1327
BbvI	GCAGC	5 cut(s)	268, 371, 897, 949, 1015
BccI	CCATC	5 cut(s)	548, 974, 1016, 1061, 1438
BciT130I	CCWGG	2 cut(s)	844, 1396
BclI	TGATCA	4 cut(s)	250, 603, 673, 1249
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	1118
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	4 cut(s)	273, 743, 1188, 1302
BfmI	CTRYAG	4 cut(s)	336, 357, 861, 1419
BisI	GCNGC	6 cut(s)	257, 360, 386, 911, 963, 1029
BlsI	GCNGC	6 cut(s)	258, 361, 387, 912, 964, 1030
Bme1390I	CCNGG	3 cut(s)	477, 844, 1396
BmiI	GGNNCC	2 cut(s)	526, 597
BmrFI	CCNGG	3 cut(s)	477, 844, 1396
BmrI	ACTGGG	1 cut(s)	1259
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	1259
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	489, 1009
BpuMI	CCSGG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	1229
BsaI	GGTCTC	1 cut(s)	1118
BsaJI	CCNNGG	3 cut(s)	842, 843, 1042
BsaWI	WCCGGW	1 cut(s)	1181
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 1395
Bse118I	RCCGGY	1 cut(s)	1181
Bse1I	ACTGG	3 cut(s)	1078, 1114, 1265
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	2 cut(s)	844, 1396
BseDI	CCNNGG	3 cut(s)	842, 843, 1042
BseGI	GGATG	4 cut(s)	460, 966, 1067, 1218
BseLI	CCNNNNNNNGG	2 cut(s)	521, 1395
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	5 cut(s)	177, 365, 393, 888, 912
BseNI	ACTGG	3 cut(s)	1078, 1114, 1265
BseXI	GCAGC	5 cut(s)	268, 371, 897, 949, 1015
BshNI	GGYRCC	1 cut(s)	595
BshTI	ACCGGT	1 cut(s)	1181
BsiHKAI	GWGCWC	1 cut(s)	1327
BsiSI	CCGG	2 cut(s)	476, 1182
BslFI	GGGAC	2 cut(s)	270, 1240
BslI	CCNNNNNNNGG	2 cut(s)	521, 1395
BsmAI	GTCTC	1 cut(s)	1118
BsmFI	GGGAC	2 cut(s)	270, 1240
Bso31I	GGTCTC	1 cut(s)	1118
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	1327
Bsp143I	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
Bsp19I	CCATGG	1 cut(s)	1042
BspACI	CCGC	2 cut(s)	386, 819
BspCNI	CTCAG	5 cut(s)	178, 364, 394, 889, 913
BspHI	TCATGA	2 cut(s)	1252, 1327
BspLI	GGNNCC	2 cut(s)	526, 597
BspMAI	CTGCAG	3 cut(s)	340, 361, 1423
BspPI	GGATC	3 cut(s)	519, 532, 1292
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	1118
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	1 cut(s)	1181
BsrI	ACTGG	3 cut(s)	1078, 1114, 1265
BssAI	RCCGGY	1 cut(s)	1181
BssECI	CCNNGG	3 cut(s)	842, 843, 1042
BssMI	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
BssNAI	GTATAC	1 cut(s)	838
BssNI	GRCGYC	1 cut(s)	1229
BssT1I	CCWWGG	1 cut(s)	1042
Bst1107I	GTATAC	1 cut(s)	838
Bst2UI	CCWGG	2 cut(s)	844, 1396
Bst4CI	ACNGT	7 cut(s)	57, 217, 292, 595, 856, 862, 1198
Bst6I	CTCTTC	3 cut(s)	115, 608, 1485
BstACI	GRCGYC	1 cut(s)	1229
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	6 cut(s)	186, 351, 402, 897, 921, 973
BstDSI	CCRYGG	1 cut(s)	1042
BstF5I	GGATG	4 cut(s)	460, 966, 1067, 1218
BstHHI	GCGC	3 cut(s)	910, 915, 1137
BstKTI	GATC	9 cut(s)	85, 253, 527, 606, 676, 709, 724, 1252, 1300
BstMAI	GTCTC	1 cut(s)	1118
BstMBI	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
BstMWI	GCNNNNNNNGC	3 cut(s)	500, 1466, 1475
BstNI	CCWGG	2 cut(s)	844, 1396
BstNSI	RCATGY	2 cut(s)	494, 682
BstSCI	CCNGG	3 cut(s)	475, 842, 1394
BstSFI	CTRYAG	4 cut(s)	336, 357, 861, 1419
BstV1I	GCAGC	5 cut(s)	268, 371, 897, 949, 1015
BstX2I	RGATCY	2 cut(s)	524, 1297
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	2 cut(s)	524, 1297
BstZ17I	GTATAC	1 cut(s)	838
BtgI	CCRYGG	1 cut(s)	1042
BtsCI	GGATG	4 cut(s)	460, 966, 1067, 1218
BtsIMutI	CAGTG	3 cut(s)	288, 852, 1324
Cac8I	GCNNGC	1 cut(s)	657
CaiI	CAGNNNCTG	1 cut(s)	1441
CciI	TCATGA	2 cut(s)	1252, 1327
CfoI	GCGC	3 cut(s)	910, 915, 1137
Cfr10I	RCCGGY	1 cut(s)	1181
Csp6I	GTAC	1 cut(s)	885
CspAI	ACCGGT	1 cut(s)	1181
CviQI	GTAC	1 cut(s)	885
DdeI	CTNAG	6 cut(s)	186, 351, 402, 897, 921, 973
DpnI	GATC	9 cut(s)	84, 252, 526, 605, 675, 708, 723, 1251, 1299
DpnII	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
Eam1104I	CTCTTC	3 cut(s)	115, 608, 1485
EarI	CTCTTC	3 cut(s)	115, 608, 1485
Ecl136II	GAGCTC	1 cut(s)	1325
Eco130I	CCWWGG	1 cut(s)	1042
Eco24I	GRGCYC	1 cut(s)	1327
Eco31I	GGTCTC	1 cut(s)	1118
Eco53kI	GAGCTC	1 cut(s)	1325
Eco57I	CTGAAG	2 cut(s)	261, 1418
EcoICRI	GAGCTC	1 cut(s)	1325
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	842, 1394
EcoT14I	CCWWGG	1 cut(s)	1042
EcoT38I	GRGCYC	1 cut(s)	1327
ErhI	CCWWGG	1 cut(s)	1042
FaqI	GGGAC	2 cut(s)	270, 1240
FauNDI	CATATG	1 cut(s)	1204
FbaI	TGATCA	4 cut(s)	250, 603, 673, 1249
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	6 cut(s)	257, 360, 386, 911, 963, 1029
FokI	GGATG	4 cut(s)	467, 953, 1074, 1225
FriOI	GRGCYC	1 cut(s)	1327
Fsp4HI	GCNGC	6 cut(s)	257, 360, 386, 911, 963, 1029
FspBI	CTAG	4 cut(s)	273, 743, 1188, 1302
FspI	TGCGCA	1 cut(s)	1136
GlaI	GCGC	3 cut(s)	909, 914, 1136
GluI	GCNGC	6 cut(s)	257, 360, 386, 911, 963, 1029
HapII	CCGG	2 cut(s)	476, 1182
HhaI	GCGC	3 cut(s)	910, 915, 1137
Hin1I	GRCGYC	1 cut(s)	1229
Hin6I	GCGC	3 cut(s)	908, 913, 1135
HinP1I	GCGC	3 cut(s)	908, 913, 1135
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	8 cut(s)	188, 404, 733, 830, 942, 977, 1259, 1334
HpaII	CCGG	2 cut(s)	476, 1182
HphI	GGTGA	2 cut(s)	839, 909
Hpy166II	GTNNAC	3 cut(s)	838, 850, 1155
Hpy188III	TCNNGA	8 cut(s)	149, 506, 515, 1172, 1188, 1247, 1253, 1328
Hpy8I	GTNNAC	3 cut(s)	838, 850, 1155
HpyAV	CCTTC	2 cut(s)	312, 316
HpyCH4III	ACNGT	7 cut(s)	57, 217, 292, 595, 856, 862, 1198
HpyCH4IV	ACGT	2 cut(s)	558, 1229
HpyCH4V	TGCA	9 cut(s)	338, 359, 591, 797, 983, 1031, 1421, 1460, 1478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	500, 1466, 1475
HpyF3I	CTNAG	6 cut(s)	186, 351, 402, 897, 921, 973
HpySE526I	ACGT	2 cut(s)	558, 1229
Hsp92I	GRCGYC	1 cut(s)	1229
HspAI	GCGC	3 cut(s)	908, 913, 1135
Ksp22I	TGATCA	4 cut(s)	250, 603, 673, 1249
Kzo9I	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
LmnI	GCTCC	2 cut(s)	771, 1322
Lsp1109I	GCAGC	5 cut(s)	268, 371, 897, 949, 1015
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	4 cut(s)	273, 743, 1188, 1302
MaeII	ACGT	2 cut(s)	558, 1229
MaeIII	GTNAC	4 cut(s)	578, 827, 856, 1105
MalI	GATC	9 cut(s)	84, 252, 526, 605, 675, 708, 723, 1251, 1299
MboI	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
MboII	GAAGA	6 cut(s)	102, 139, 254, 492, 625, 1340
MfeI	CAATTG	1 cut(s)	814
MflI	RGATCY	2 cut(s)	524, 1297
MhlI	GDGCHC	1 cut(s)	1327
MlyI	GAGTC	4 cut(s)	197, 413, 742, 824
MmeI	TCCRAC	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	1407
MseI	TTAA	5 cut(s)	420, 429, 462, 686, 738
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	2 cut(s)	476, 1182
MspR9I	CCNGG	3 cut(s)	477, 844, 1396
MteI	GCGCNGCGC	1 cut(s)	911
MunI	CAATTG	1 cut(s)	814
MvaI	CCWGG	2 cut(s)	844, 1396
MwoI	GCNNNNNNNGC	3 cut(s)	500, 1466, 1475
NciI	CCSGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	1042
NdeI	CATATG	1 cut(s)	1204
NdeII	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
NlaIV	GGNNCC	2 cut(s)	526, 597
NmuCI	GTSAC	2 cut(s)	578, 827
NsbI	TGCGCA	1 cut(s)	1136
NspI	RCATGY	2 cut(s)	494, 682
NspV	TTCGAA	1 cut(s)	393
PagI	TCATGA	2 cut(s)	1252, 1327
PasI	CCCWGGG	1 cut(s)	843
PciI	ACATGT	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	1407
PfeI	GAWTC	4 cut(s)	942, 977, 1259, 1334
PfoI	TCCNGGA	1 cut(s)	475
PinAI	ACCGGT	1 cut(s)	1181
PkrI	GCNGC	6 cut(s)	258, 361, 387, 912, 964, 1030
PleI	GAGTC	4 cut(s)	196, 412, 741, 824
PpsI	GAGTC	4 cut(s)	196, 412, 741, 824
Ppu21I	YACGTR	1 cut(s)	559
PscI	ACATGT	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	1327
Psp6I	CCWGG	2 cut(s)	842, 1394
PspGI	CCWGG	2 cut(s)	842, 1394
PspN4I	GGNNCC	2 cut(s)	526, 597
PstI	CTGCAG	3 cut(s)	340, 361, 1423
PstNI	CAGNNNCTG	1 cut(s)	1441
PsuI	RGATCY	2 cut(s)	524, 1297
RsaI	GTAC	1 cut(s)	886
RsaNI	GTAC	1 cut(s)	885
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	1327
SaqAI	TTAA	5 cut(s)	420, 429, 462, 686, 738
SatI	GCNGC	6 cut(s)	257, 360, 386, 911, 963, 1029
Sau3AI	GATC	9 cut(s)	82, 250, 524, 603, 673, 706, 721, 1249, 1297
SchI	GAGTC	4 cut(s)	197, 413, 742, 824
ScrFI	CCNGG	3 cut(s)	477, 844, 1396
SduI	GDGCHC	1 cut(s)	1327
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	4 cut(s)	336, 357, 861, 1419
SfuI	TTCGAA	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	504, 988
SmoI	CTYRAG	2 cut(s)	504, 988
SpeI	ACTAGT	1 cut(s)	742
SsiI	CCGC	2 cut(s)	386, 819
SspI	AATATT	1 cut(s)	1283
SspMI	CTAG	4 cut(s)	273, 743, 1188, 1302
SstI	GAGCTC	1 cut(s)	1327
StyD4I	CCNGG	3 cut(s)	475, 842, 1394
StyI	CCWWGG	1 cut(s)	1042
TaaI	ACNGT	7 cut(s)	57, 217, 292, 595, 856, 862, 1198
TaiI	ACGT	2 cut(s)	561, 1232
TaqI	TCGA	2 cut(s)	85, 393
TatI	WGTACW	1 cut(s)	884
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	942, 977, 1259, 1334
Tru1I	TTAA	5 cut(s)	420, 429, 462, 686, 738
Tru9I	TTAA	5 cut(s)	420, 429, 462, 686, 738
TscAI	CASTG	3 cut(s)	295, 859, 1324
TseFI	GTSAC	2 cut(s)	578, 827
TseI	GCWGC	5 cut(s)	256, 359, 910, 962, 1028
Tsp45I	GTSAC	2 cut(s)	578, 827
TspDTI	ATGAA	7 cut(s)	84, 102, 354, 471, 579, 626, 1287
TspRI	CASTG	3 cut(s)	295, 859, 1324
XapI	RAATTY	4 cut(s)	197, 396, 807, 902
XbaI	TCTAGA	1 cut(s)	1187
XceI	RCATGY	2 cut(s)	494, 682
XmiI	GTMKAC	1 cut(s)	837
XmnI	GAANNNNTTC	1 cut(s)	1407
XspI	CTAG	4 cut(s)	273, 743, 1188, 1302
ZraI	GACGTC	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.