Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001848.1

Orthogroup ID

OG0006920

Physical Location & Seq

Genomic Coordinates Reverse (-)

796 .. 2114

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001848.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgaggtctccaacaagcgcgagaccaagagcagtcgctcagcctcagaaggaaacttacagtcgtgcaagaaagaacccattttttaatggactgatcgatgggcctcctccggcgtttgattttaatgtgagtcacagcaggaacattgctcggtctatgtcagatattggtcataaacagccacaagataccttattagatgtgtttgaacggttcagtccaaatgaaaaaccctttgatcgaattactccaaaggaaaaatcctcttcattccgtataaagaagaacccttttgagtttagtccagaaaagaactttgagtggtcagagaatggtaaatctgagtcctttgaattcacaaatgttcagactgtgttttgctctaacttggctactgaagaaaatgatcagcagcgtgagagtgtatctagtaatacaagtcccactgttgaaaaaacatttcgtgtgaatagaaggaaggaaaacctgtctgcagttccacttcctcagtctgcagcttcattttacaatggcaactcgccgcagttcgaaatttctgagtcatgtccaagcattaagatgtgtggaagattagggtttttggaattgggggaaattggagagacggagcagatctggaagaaatggccggcgaggacggcgaagaaatataatgattggagcctgggtcttggatacatcgaattcgcccaaatcgacaccgtctacgccgccatcggatccatggctgttgagtttcttccaatgctctgcaaatgggtctctgttctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

DHHA2

Protein Analysis

265

Amino Acids

30.13

Weight (kDa)

8.28

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006920)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11620
malus_domestica	MD05G1261900.v1.1 MD10G1240200.v1.1
prunus_persica	Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1 Prupe.4G103700_v2.0.a1
pyrus_communis	pycom05g24560 pycom10g20080 pycom10g20090
rosa_chinensis	RchiOBHm_Chr5g0018641
rosa_laevigata	RLG00000032385
rosa_multiflora	Rmu_co8466739.1_g000001 Rmu_sc0001848.1_g000002 Rmu_sc0008501.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059110
rosa_rugosa	Rorug05G0045600
rosa_samantha	Rh5AG136800 Rh5BG135600 Rh5CG147500 Rh5DG136800
rosa_wichuraiana	Rw5G012120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	729
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	545, 735
AclWI	GGATC	2 cut(s)	738, 751
AcoI	YGGCCR	1 cut(s)	650
AcsI	RAATTY	3 cut(s)	356, 555, 707
AcuI	CTGAAG	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	212, 356, 455
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw26I	GTCTC	4 cut(s)	12, 16, 620, 790
AlwI	GGATC	2 cut(s)	738, 751
AoxI	GGCC	2 cut(s)	104, 650
ApeKI	GCWGC	2 cut(s)	415, 518
ApoI	RAATTY	3 cut(s)	356, 555, 707
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	104
AsuII	TTCGAA	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	743
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbvI	GCAGC	2 cut(s)	427, 530
BccI	CCATC	2 cut(s)	95, 746
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	1 cut(s)	689
BciVI	GTATCC	1 cut(s)	692
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	4 cut(s)	12, 16, 620, 790
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	2 cut(s)	495, 516
BfuI	GTATCC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	636
BisI	GCNGC	4 cut(s)	416, 519, 545, 735
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	4 cut(s)	417, 520, 546, 736
Bme1390I	CCNGG	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	686, 745
BmrFI	CCNGG	1 cut(s)	689
Bpu1102I	GCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	552
Bsa29I	ATCGAT	1 cut(s)	99
BsaI	GGTCTC	3 cut(s)	12, 16, 790
BsaJI	CCNNGG	2 cut(s)	688, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bse118I	RCCGGY	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	689
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	688, 747
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	5 cut(s)	53, 59, 336, 524, 552
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	427, 530
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	106, 652
BshVI	ATCGAT	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	113, 653
BslFI	GGGAC	1 cut(s)	429
BsmAI	GTCTC	4 cut(s)	12, 16, 620, 790
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	106, 652
Bso31I	GGTCTC	3 cut(s)	12, 16, 790
Bsp119I	TTCGAA	1 cut(s)	552
Bsp143I	GATC	5 cut(s)	96, 241, 409, 636, 743
Bsp1720I	GCTNAGC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	2 cut(s)	545, 735
BspANI	GGCC	2 cut(s)	106, 652
BspCNI	CTCAG	5 cut(s)	52, 58, 337, 523, 553
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	686, 745
BspMAI	CTGCAG	2 cut(s)	499, 520
BspPI	GGATC	2 cut(s)	738, 751
BspT104I	TTCGAA	1 cut(s)	552
BspTNI	GGTCTC	3 cut(s)	12, 16, 790
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	688, 747
BssMI	GATC	5 cut(s)	96, 241, 409, 636, 743
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	5 cut(s)	62, 216, 376, 451, 727
Bst6I	CTCTTC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	552
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	5 cut(s)	39, 45, 345, 510, 561
BstDSI	CCRYGG	1 cut(s)	747
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	5 cut(s)	99, 244, 412, 639, 746
BstMAI	GTCTC	4 cut(s)	12, 16, 620, 790
BstMBI	GATC	5 cut(s)	96, 241, 409, 636, 743
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	2 cut(s)	495, 516
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	427, 530
BstX2I	RGATCY	2 cut(s)	636, 743
BstYI	RGATCY	2 cut(s)	636, 743
Bsu15I	ATCGAT	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	2 cut(s)	106, 652
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	747
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	654
CfoI	GCGC	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	99
CviAII	CATG	2 cut(s)	567, 748
CviJI	RGCY	8 cut(s)	43, 106, 184, 395, 521, 652, 687, 752
CviKI_1	RGCY	8 cut(s)	43, 106, 184, 395, 521, 652, 687, 752
DdeI	CTNAG	5 cut(s)	39, 45, 345, 510, 561
DpnI	GATC	5 cut(s)	98, 243, 411, 638, 745
DpnII	GATC	5 cut(s)	96, 241, 409, 636, 743
EaeI	YGGCCR	1 cut(s)	650
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	747
Eco31I	GGTCTC	3 cut(s)	12, 16, 790
Eco57I	CTGAAG	1 cut(s)	420
EcoRI	GAATTC	2 cut(s)	356, 707
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	747
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	2 cut(s)	570, 751
FaiI	YATR	6 cut(s)	161, 177, 281, 568, 675, 749
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	2 cut(s)	566, 747
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	4 cut(s)	416, 519, 545, 735
Fsp4HI	GCNGC	4 cut(s)	416, 519, 545, 735
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	4 cut(s)	416, 519, 545, 735
HaeIII	GGCC	2 cut(s)	106, 652
HapII	CCGG	2 cut(s)	113, 653
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	570, 751
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	133, 347, 563
HpaII	CCGG	2 cut(s)	113, 653
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188I	TCNGA	7 cut(s)	48, 166, 331, 346, 372, 562, 743
Hpy188III	TCNNGA	2 cut(s)	308, 640
Hpy8I	GTNNAC	1 cut(s)	730
HpyAV	CCTTC	3 cut(s)	43, 471, 475
HpyCH4III	ACNGT	5 cut(s)	62, 216, 376, 451, 727
HpyCH4V	TGCA	4 cut(s)	68, 497, 518, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	5 cut(s)	39, 45, 345, 510, 561
Hsp92II	CATG	2 cut(s)	570, 751
HspAI	GCGC	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	96, 241, 409, 636, 743
LmnI	GCTCC	2 cut(s)	631, 684
LpnPI	CCDG	8 cut(s)	126, 127, 321, 503, 625, 666, 674, 701
Lsp1109I	GCAGC	2 cut(s)	427, 530
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	5 cut(s)	98, 243, 411, 638, 745
MboI	GATC	5 cut(s)	96, 241, 409, 636, 743
MboII	GAAGA	7 cut(s)	261, 298, 413, 603, 655, 679, 755
MflI	RGATCY	2 cut(s)	636, 743
MluCI	AATT	6 cut(s)	246, 356, 555, 608, 618, 707
MlyI	GAGTC	3 cut(s)	142, 356, 572
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	6 cut(s)	54, 117, 120, 277, 519, 651
MroNI	GCCGGC	1 cut(s)	652
MseI	TTAA	4 cut(s)	87, 126, 579, 796
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	2 cut(s)	113, 653
MspR9I	CCNGG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	662
NaeI	GCCGGC	1 cut(s)	654
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	5 cut(s)	96, 241, 409, 636, 743
NgoMIV	GCCGGC	1 cut(s)	652
NlaIII	CATG	2 cut(s)	570, 751
NlaIV	GGNNCC	2 cut(s)	686, 745
NmuCI	GTSAC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	654
PflFI	GACNNNGTC	1 cut(s)	725
PkrI	GCNGC	4 cut(s)	417, 520, 546, 736
PleI	GAGTC	3 cut(s)	141, 355, 571
PpsI	GAGTC	3 cut(s)	141, 355, 571
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	686, 745
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	2 cut(s)	499, 520
PsuI	RGATCY	2 cut(s)	636, 743
PsyI	GACNNNGTC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	4 cut(s)	87, 126, 579, 796
SatI	GCNGC	4 cut(s)	416, 519, 545, 735
Sau3AI	GATC	5 cut(s)	96, 241, 409, 636, 743
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	3 cut(s)	142, 356, 572
ScrFI	CCNGG	1 cut(s)	689
SetI	ASST	4 cut(s)	8, 197, 492, 523
SfcI	CTRYAG	2 cut(s)	495, 516
SfuI	TTCGAA	1 cut(s)	552
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	6 cut(s)	246, 356, 555, 608, 618, 707
SsiI	CCGC	2 cut(s)	545, 735
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	5 cut(s)	62, 216, 376, 451, 727
TaqI	TCGA	5 cut(s)	99, 244, 552, 705, 720
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	6 cut(s)	246, 356, 555, 608, 618, 707
TauI	GCSGC	2 cut(s)	547, 737
Tru1I	TTAA	4 cut(s)	87, 126, 579, 796
Tru9I	TTAA	4 cut(s)	87, 126, 579, 796
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	415, 518
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	243, 261, 513
TspGWI	ACGGA	2 cut(s)	266, 644
TspRI	CASTG	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	725
XapI	RAATTY	3 cut(s)	356, 555, 707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	729
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.