Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Forward (+)

23716988 .. 23728949

Gene Structure 11962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5115 bp

ATGGAGGACAGTTTAGTGCCTGCGGGCGAAGAGACAGTTGAAAAGGTCCCCATTCCAAAGAAGCAGTCCTCTTTTTGTTCATCAGAAACTGCAAAAAGTATTTCCAAAAATGTGAAACCTGGTTGTGCAGCGACATCGAAGGTCTCGGTTCCAACTAGTTCCATTAGACAGAAAGTAGACCCGAAAAGTGGTTTGGATCCTAATTTAAGTGTCACCAAGTCAAGTGCAACTGGCGCTACCCGGAGTTTGAATTCAGTCCCTGTAAGGCGCAACAGCACTGGAGTTTTGCCTCAGAAGCCATCAGTCTCCACCGCAAGAATGCAAAACACTGCTACTACGGCTGCAGTTAAAAAGACTCCGGACGCTGTAAGGCGGTCTCTCCCAGAGCTTAGAAGAAGTTCAGTGCCTTCAGCTGCTACTACTAAATCTTTGACTAGAACCAGCGTTTCAGAGGTTAGAAAGTCGGTTTCAGGATCGCCATTGGACCGGAGCCTGAATAAATCAACTGGATCTAATGTGAGTGTAACTAAACAAGAGACGATCAGGAATCCTGCCGTGAGGCCAGCATTGTCCACTTCTTCTTCATCTTCAAGAAGGGCGACTTCCTCATTGGACAGTAGTGCTAGCAGTGGAGTCAGGAAGTCGGTCTCAAAGCTTTCTTCCCCATCAGCTCGATCACCTGCAGTTACTAGTGGGCTGAGAACCGGTTCTTTGTCCTCTTCTCTTGATAGAAATTCTAGTTTATCTGGACGTAGGAAAACAGCAACTCCTGAACACCGGGATTCTCGGTTCGTTGTACTTCCACAAGTGGAAATCAAAGCCGGTGATGATCTGAGGTTAGATCTTAGGGGTCACAGAGTTCGTAGCCTCAAGGCTAGCGGGTTGAACTTGTCACCAAATTTAGAGTTTGTTTATCTTAGAGACAATCTATTGTCTACATTGGAGGGAGTGGAAATATTGACACGAGTAAAGGTTCTGGATTTGAGCTTCAATGATTTCAAAGGGCCTGGATTTGAACCTCTTGAAAATTGCAAAGTCTTACAGCAACTTTATCTTGCTGGAAACCAAATCACGTCACTTGCAAGCCTCCCTCAGCTCCCTAATTTGGAGTTTCTCTCTGTCGCTCAAAATAAGTTGAAGTCTCTTACAATGGCAAGCCAACCTAGATTACAGGTATTAGCTGCCAGCAAAAACAAAATTTCAACTCTAAAGGGTTTCCCCTACTTACCAGTCCTTGAGCATTTACGAGTGGAGGAGAATCCCATTCTTAAAATGCCTCACTTAGAAGCAGCTTCCATTTTGCTTGTTGGCCCTACCTTAAAAAAGTTCAATGATAGAGATCTTTCCCGAGAAGAGCTTACAATTGCAAAGCGCTATCCTGCACACACCTCTTTGTGCATTAGAGATGGTTGGGAGTTTTGCCGTCCAGACCATGCAGCAGACTCAACTTTTCGTTTCCTTGTTGAGCAATGGAAGGATCATTTGCCTCCTGGCTTCCTGGTCAAGGAGGCCTCTGTTGAGAAACCATTTGAAGAAGATACCTGTCGCTGCCAGTTCACTTTTGTACAAGAGAACACTTTGGCAACTGATCCACAATTAATCTTAAAATACCAATGGTTTGTAGGAGAAAGAACTCCTTCAAATTTCACCATTATTCCTGATGCCACTGGAGAGGTCTACTGGCCTAAGCATGACGATATCGGTAAAATTTTAAAAGTGGAGTGCACTCCTGTATTAGGAGAAACGGAGTATCCTCCTATTTTTGCTATAACTTCTCCAGTTAAACGAGGAAGTGGAATCCCAAAGGTTGTGAATCTTGATGTCCATGGAGATCTGGTGGAGGGAAATATTATTAGAGGCCATGCAGAGGTTGCGTGGTGTGGTGGTACTCCAGGGAAAGGTGTTTCTAGTTGGTTGAGGAGAAAATGGAATAGCAGTCCTGTGGTTATTGCGGGAGCTGAAGATGAGGAGCACAAATTGACCATAGATGATATTGATTCAAGTTTGGTTTTTATGTACACACCAGTGACAGAAGAAGGTGCCAAAGGAGAACCTCATTATAAATACACCGATTTTGTAAAATCAGCCCCTCCATCAGTCAATAATGTACACATTGTTGGAGATGTTGTTGAAGGCAGTACCATCAGAGGAGTTGGTGATTACTTTGGAGGAAGAGAGGGTCCCAGCAAGTTTGAATGGTTATGTGAGCATAAAGACACTGGAGACCTCGTTTTGGTATCAACTGGTACATCTGAGTATACTTTGACTAAGGAAGATATTGGCCATCACTTGGCTTTTGTGTATATACCTATCAATTTTGAAGGTCAAGAAGGGGAATCGGTTTCGATAAGGTCCCATGTCGTGAAGCCAGCACCTCCAAAGGTAATAGATTTGAAGATAGTTGGTGATCTAAGGGAGAACAGTAAGGTTACTGCAGTCGGTACTGTCACTGGAGGAACGGAAGGGTCTAGCAGAGTACAGTGGTTTAAAACAAGTTCGTCTACTTTGGATGGTGAGAAAGGTCTTGAATCTTTGAGCACCTCTAAGATTGCAAAGGCGTTTCGCGTACCCTTAGGAGCTGTTGGCTATTACATCGTTGCAAAATTTACTCCTATGACTCTAGACGGTGAATCTGGTGAACCAGCATATGCTATATCAGATAGAGCAGTTGAGACTCTGCCTCCAAGTCTAAATTTCTTATCAATTACTGGTGATTACACCGAAGGTGGAATGTTGACGGCATCATATGGTTACATTGGTGGTCATGAAGGAAAAAGTATCTATAATTGGTATCTTCATGAGGTTGAAGCTGACTCCGGATCTCTAATACCTGACGTCACAGGACTTCTTCAGTATCGTATTGCAAAAGATGCAATTGGTAAATTCATTTCATTCCAATGCACACCGGTGCGTGATGATGGGATTGTGGGTGAACCAAGAACAAGCATGGGCCAGGAACGTGTTTGCCCTGGGAACCCTAGATTGCTTTCTCTACAAATCGTTGGGAATGCCACTGAAGGAACTACACTTAGTGTGGAAAAAAAATATTGGGGCGGTGAAGAGGGAGATTCAGTTTTCTATTGGTTCCGGACTACTTCAGATGGAGCACAAACTGAAATTAGGGGTGCAAAAGCTGCTTCATACACACTCTCAATTGATGATATTGACTTCTTTGTCTCAGTGTCATGTGAGCCTATCAGAAGTGACTGGGCTCGTGGTCCCACTGTTCTATCCGAACAAATTGGACCTGTTATACCTGGCCCCCCAACTTGTCGATCTTTGGAGTTTCTTGGTTCAATGATAGAAGGGCAACGTCTCAGCTTTACTGCTTCTTATAGTGGAGGGGAGAAAGGAAATTGCTCCCACGAATGGTTTAGAGTGAAGCGTAATGGTGTCAAGGAGAAGTTGAGTACTAAAGATTTTGTGGATTTGACCCTTGATGATGTGGGAACATGTGTTGAACTTGTTTACACTCCTATGCGCAAAGATGGGATGAAAGGAAATTCTAAGAGTATACAATCTGATGTGATTGCTCCTGCGGATCCTGAAGGGCTGGAGCTTGTCATTCCTGATTGCTGTGAGGCTGAAAATTTACACCCGAAAAAAAGATATTTTGGTGGAGAAGAAGGTGTTGGAGAATACATTTGGTACAGAACAAAGAATAAGCTGCATGGATCTGCACTGCAGGATATATCTAATGCATGTGAAGATTTGGTTATATGTGGTAAAACATTAACATACACACCAGTACTTGAAGATGTGGAGGCATATTTAGCCTTGCATTGGCTCCCCACTCGTTCTGATGGAAAATGTGGACAGCCACTAGTTGCGACTTGCAACTTTCCAGTTGCACCAGCTCTTCCTGTGGTTTCTAATGTTCGTGTGAAGGAGTTGTCACGAAGTGTTTATTCTGGAGAAGGACAGTATTTTGGTGGATATGAAGGATCGAGCCTGTTTAGCTGGTATAGAAAAAATAATGAAGGAACTATTGCTCTTATTAATGGAGCCAACTCTAACACTTATGAAGTCACCGATGCAGACTACAACTGCCGTCTATTGTTTGGATACACACCAGTTCGTTCAGATTCGGTGGTTGGAGAACTGAAGTTGTCTGAGCCGACTGATATTATTCTTCCAGAGCTTCCAAGACTAGAGATGCTCATTCTCACTGGAAAGGCAATCGAAGGTGATGTTGTAACAGTTGTTCAAGTGATCCCAGAGAGTGAGACTCAACAGATTGTTTGGAGCAAGTACAAGAAAGATGTCAGATATCAATGGTATTTTTCTTCAAAAGAGGAAGATAAGAAAACCTTTGAAATATTACCTGCGCAGCAATCTTGCTCCTACAAGATGCGTCTAGAAGATGTTGGCCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTCTTTGGAAGATCAACTGAGCCTGTATATGCTGAAACTGGACCTATATTACCAGGGATCCCTAGGATAGATAAGCTGGAGATTGAAGGGAGGGGTTTCCACACCAACTTATACGCTGTACGTGGAATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATCCAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCAGGGGAGGTAGGGAGAATGTACGAGTCTAATGTGGACGACGTAGGGTACAGGCTTGTTGTGGTTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGCAACCTGTTTCTGCATCAACAGACCCGATTGCAGTTGAACCTGATGTTCTTAAAGAAGTGAGGCAGAAGCTTGATCTTGGAACTGTGAAATTTGAGGCTCCTGCAGTGGGAAGTCTTGAGAGAAGAATCCTCGAAGTCAATAGAAAAAGAGTCAAGGTGGTAAAGCCCGGTTCTAAAACCTCCTTCCCAACGACTGAAATTCGTGGAAGTTATGCGCCTCCCTTTCACGTGGAGCTGTTCCGAAACGACCAACATCGTCTGAAAATCGTGGTGGACGGCGAGAATGAGGTGGACTTGATGGTGCAGTCGAGGCACCTGCGGGATGTGACAGTGCTTGTGATCCGAGGGCTTGCTCAGAGATTCAACAGTACATCCCTCAACACCCTCCTCAAAATTGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

1705

Amino Acids

186.88

Weight (kDa)

6.52

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	347 - 383	1.1e-06	Leucine Rich repeats (2 copies)
IG_AIR9	PF23197	505 - 590	7.9e-10	AIR9 A9 domain
IG_AIR9	PF23197	603 - 687	3.1e-20	AIR9 A9 domain
IG_AIR9	PF23197	699 - 784	1.2e-33	AIR9 A9 domain
IG_AIR9	PF23197	795 - 886	5.9e-16	AIR9 A9 domain
IG_AIR9	PF23197	897 - 983	3.8e-22	AIR9 A9 domain
IG_AIR9	PF23197	997 - 1076	4.9e-20	AIR9 A9 domain
IG_AIR9	PF23197	1091 - 1173	4.9e-23	AIR9 A9 domain
IG_AIR9	PF23197	1188 - 1276	1.5e-13	AIR9 A9 domain
IG_AIR9	PF23197	1301 - 1369	8.9e-18	AIR9 A9 domain
IG_AIR9	PF23197	1491 - 1576	7e-21	AIR9 A9 domain
PH_AIR9	PF23218	1602 - 1691	6.9e-50	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2061
AarI	CACCTGC	2 cut(s)	688, 5034
AasI	GACNNNNNNGTC	1 cut(s)	3173
AatII	GACGTC	1 cut(s)	2838
Acc16I	TGCGCA	2 cut(s)	3482, 4329
Acc36I	ACCTGC	3 cut(s)	688, 4333, 5034
AccB1I	GGYRCC	2 cut(s)	2039, 5022
AccB7I	CCANNNNNTGG	1 cut(s)	2290
AccI	GTMKAC	6 cut(s)	177, 935, 1677, 2258, 2501, 3514
AccII	CGCG	1 cut(s)	2565
AccIII	TCCGGA	3 cut(s)	358, 2816, 3087
AciI	CCGC	9 cut(s)	23, 312, 373, 879, 1952, 3054, 3539, 4372, 5029
AcoI	YGGCCR	2 cut(s)	2281, 4369
AcuI	CTGAAG	7 cut(s)	393, 1980, 2834, 3036, 3081, 3567, 4124
AcvI	CACGTG	1 cut(s)	4939
AcyI	GRCGYC	1 cut(s)	2835
AdeI	CACNNNGTG	2 cut(s)	3032, 3902
AfeI	AGCGCT	1 cut(s)	1373
AflIII	ACRYGT	2 cut(s)	2959, 3452
AgeI	ACCGGT	2 cut(s)	704, 2905
AhlI	ACTAGT	3 cut(s)	155, 689, 3823
AjiI	CACGTC	1 cut(s)	1074
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 3615, 3647
AleI	CACNNNNGTG	2 cut(s)	2024, 2906
AloI	GAACNNNNNNTCC	2 cut(s)	773, 805
Alw21I	GWGCWC	4 cut(s)	1727, 1974, 2540, 3109
Alw44I	GTGCAC	1 cut(s)	1723
AlwNI	CAGNNNCTG	2 cut(s)	89, 260
Ama87I	CYCGRG	1 cut(s)	1347
Aor13HI	TCCGGA	3 cut(s)	358, 2816, 3087
Aor51HI	AGCGCT	1 cut(s)	1373
ApaLI	GTGCAC	1 cut(s)	1723
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AseI	ATTAAT	2 cut(s)	1598, 3999
AsiGI	ACCGGT	2 cut(s)	704, 2905
Asp700I	GAANNNNTTC	3 cut(s)	397, 706, 1636
AspA2I	CCTAGG	1 cut(s)	4466
AspLEI	GCGC	6 cut(s)	236, 270, 1374, 3483, 4330, 4927
AsuC2I	CCSGG	3 cut(s)	241, 779, 4878
AsuNHI	GCTAGC	2 cut(s)	623, 875
AvaI	CYCGRG	1 cut(s)	1347
AvaII	GGWCC	7 cut(s)	46, 484, 2180, 2352, 3218, 3245, 4445
AvrII	CCTAGG	1 cut(s)	4466
AxyI	CCTNAGG	1 cut(s)	2572
BaeGI	GKGCMC	1 cut(s)	1727
BalI	TGGCCA	1 cut(s)	2283
BamHI	GGATCC	3 cut(s)	196, 3541, 4461
BanI	GGYRCC	2 cut(s)	2039, 5022
BanII	GRGCYC	1 cut(s)	3214
BauI	CACGAG	2 cut(s)	963, 3213
BbrPI	CACGTG	1 cut(s)	4939
Bbv12I	GWGCWC	4 cut(s)	1727, 1974, 2540, 3109
BbvCI	CCTCAGC	1 cut(s)	1092
BceAI	ACGGC	6 cut(s)	354, 539, 1407, 2754, 4035, 5002
BcgI	CGANNNNNNTGC	4 cut(s)	117, 151, 5008, 5042
BciVI	GTATCC	2 cut(s)	1761, 4058
BcnI	CCSGG	3 cut(s)	241, 779, 4878
BcuI	ACTAGT	3 cut(s)	155, 689, 3823
BfmI	CTRYAG	5 cut(s)	342, 681, 2433, 3683, 4812
BfoI	RGCGCY	2 cut(s)	237, 1375
BfuAI	ACCTGC	3 cut(s)	688, 4333, 5034
BfuI	GTATCC	2 cut(s)	1761, 4058
BglII	AGATCT	3 cut(s)	841, 1339, 1831
BlnI	CCTAGG	1 cut(s)	4466
BmcAI	AGTACT	2 cut(s)	3412, 3750
Bme18I	GGWCC	7 cut(s)	46, 484, 2180, 2352, 3218, 3245, 4445
BmeT110I	CYCGRG	1 cut(s)	1347
BmgBI	CACGTC	1 cut(s)	1074
BmrI	ACTGGG	1 cut(s)	3217
BmsI	GCATC	7 cut(s)	1651, 2750, 2860, 4024, 4146, 4341, 4733
BmtI	GCTAGC	2 cut(s)	627, 879
BmuI	ACTGGG	1 cut(s)	3217
BoxI	GACNNNNGTC	1 cut(s)	4403
BplI	GAGNNNNNCTC	4 cut(s)	1100, 1132, 4213, 4245
BpmI	CTGGAG	9 cut(s)	300, 1689, 1761, 1875, 2241, 2472, 3575, 3933, 4502
Bpu10I	CCTNAGC	2 cut(s)	1092, 1686
BpuEI	CTTGAG	3 cut(s)	854, 1256, 4847
BpuMI	CCSGG	3 cut(s)	241, 779, 4878
BsaAI	YACGTR	2 cut(s)	4526, 4939
BsaBI	GATNNNNATC	1 cut(s)	1338
BsaHI	GRCGYC	1 cut(s)	2835
BsaI	GGTCTC	4 cut(s)	148, 381, 652, 2217
BsaJI	CCNNGG	8 cut(s)	1825, 1892, 2968, 2969, 4457, 4466, 4613, 5053
BsaWI	WCCGGW	6 cut(s)	358, 486, 704, 2816, 2905, 3087
Bse118I	RCCGGY	3 cut(s)	704, 821, 2905
Bse21I	CCTNAGG	1 cut(s)	2572
Bse3DI	GCAATG	1 cut(s)	1475
Bse8I	GATNNNNATC	1 cut(s)	1338
BseAI	TCCGGA	3 cut(s)	358, 2816, 3087
BseDI	CCNNGG	8 cut(s)	1825, 1892, 2968, 2969, 4457, 4466, 4613, 5053
BseGI	GGATG	5 cut(s)	2515, 3498, 4702, 5038, 5081
BseJI	GATNNNNATC	1 cut(s)	1338
BseMI	GCAATG	1 cut(s)	1475
BseRI	GAGGAG	5 cut(s)	1268, 1933, 1982, 2163, 5087
BseSI	GKGCMC	1 cut(s)	1727
BseYI	CCCAGC	1 cut(s)	2183
BsgI	GTGCAG	4 cut(s)	147, 1365, 3663, 5033
Bsh1236I	CGCG	1 cut(s)	2565
BshNI	GGYRCC	2 cut(s)	2039, 5022
BshTI	ACCGGT	2 cut(s)	704, 2905
BsiHKAI	GWGCWC	4 cut(s)	1727, 1974, 2540, 3109
BsiHKCI	CYCGRG	1 cut(s)	1347
BslFI	GGGAC	5 cut(s)	32, 242, 2166, 2338, 3204
BsmBI	CGTCTC	2 cut(s)	530, 3320
BsmFI	GGGAC	5 cut(s)	32, 242, 2166, 2338, 3204
BsmI	GAATGC	2 cut(s)	324, 3013
Bso31I	GGTCTC	4 cut(s)	148, 381, 652, 2217
BsoBI	CYCGRG	1 cut(s)	1347
Bsp1286I	GDGCHC	5 cut(s)	1727, 1974, 2540, 3109, 3214
Bsp13I	TCCGGA	3 cut(s)	358, 2816, 3087
Bsp1407I	TGTACA	3 cut(s)	1564, 2016, 2107
Bsp19I	CCATGG	1 cut(s)	1825
BspACI	CCGC	9 cut(s)	23, 312, 373, 879, 1952, 3054, 3539, 4372, 5029
BspEI	TCCGGA	3 cut(s)	358, 2816, 3087
BspFNI	CGCG	1 cut(s)	2565
BspHI	TCATGA	2 cut(s)	2764, 2797
BspMAI	CTGCAG	5 cut(s)	346, 685, 2437, 3687, 4816
BspMI	ACCTGC	3 cut(s)	688, 4333, 5034
BspOI	GCTAGC	2 cut(s)	627, 879
BspQI	GCTCTTC	2 cut(s)	1347, 3864
BspT107I	GGYRCC	2 cut(s)	2039, 5022
BspTNI	GGTCTC	4 cut(s)	148, 381, 652, 2217
BsrDI	GCAATG	1 cut(s)	1475
BsrFI	RCCGGY	3 cut(s)	704, 821, 2905
BsrGI	TGTACA	3 cut(s)	1564, 2016, 2107
BssAI	RCCGGY	3 cut(s)	704, 821, 2905
BssECI	CCNNGG	8 cut(s)	1825, 1892, 2968, 2969, 4457, 4466, 4613, 5053
BssNAI	GTATAC	2 cut(s)	2259, 3515
BssNI	GRCGYC	1 cut(s)	2835
BssSI	CACGAG	2 cut(s)	963, 3213
BssT1I	CCWWGG	2 cut(s)	1825, 4466
Bst1107I	GTATAC	2 cut(s)	2259, 3515
Bst2BI	CACGAG	2 cut(s)	963, 3213
Bst6I	CTCTTC	6 cut(s)	24, 724, 1347, 2167, 3054, 3864
BstACI	GRCGYC	1 cut(s)	2835
BstAPI	GCANNNNNTGC	3 cut(s)	1871, 2870, 3134
BstAUI	TGTACA	3 cut(s)	1564, 2016, 2107
BstBAI	YACGTR	2 cut(s)	4526, 4939
BstDSI	CCRYGG	1 cut(s)	1825
BstENI	CCTNNNNNAGG	2 cut(s)	1502, 1734
BstF5I	GGATG	5 cut(s)	2515, 3498, 4702, 5038, 5081
BstFNI	CGCG	1 cut(s)	2565
BstH2I	RGCGCY	2 cut(s)	237, 1375
BstHHI	GCGC	6 cut(s)	236, 270, 1374, 3483, 4330, 4927
BstMWI	GCNNNNNNNGC	9 cut(s)	233, 295, 338, 1871, 2870, 3134, 3773, 3957, 5020
BstNSI	RCATGY	2 cut(s)	3456, 3705
BstPAI	GACNNNNGTC	1 cut(s)	4403
BstSFI	CTRYAG	5 cut(s)	342, 681, 2433, 3683, 4812
BstSLI	GKGCMC	1 cut(s)	1727
BstUI	CGCG	1 cut(s)	2565
BstX2I	RGATCY	9 cut(s)	196, 509, 841, 1339, 1831, 2819, 3541, 3674, 4461
BstYI	RGATCY	9 cut(s)	196, 509, 841, 1339, 1831, 2819, 3541, 3674, 4461
BstZ17I	GTATAC	2 cut(s)	2259, 3515
Bsu36I	CCTNAGG	1 cut(s)	2572
BsuI	GTATCC	2 cut(s)	1761, 4058
BtgI	CCRYGG	1 cut(s)	1825
BtrI	CACGTC	1 cut(s)	1074
BtsCI	GGATG	5 cut(s)	2515, 3498, 4702, 5038, 5081
BtsI	GCAGTG	4 cut(s)	327, 634, 3680, 4821
BveI	ACCTGC	3 cut(s)	688, 4333, 5034
CaiI	CAGNNNCTG	2 cut(s)	89, 260
CciI	TCATGA	2 cut(s)	2764, 2797
CfoI	GCGC	6 cut(s)	236, 270, 1374, 3483, 4330, 4927
Cfr10I	RCCGGY	3 cut(s)	704, 821, 2905
CseI	GACGC	2 cut(s)	371, 4343
CsiI	ACCWGGT	1 cut(s)	118
CspAI	ACCGGT	2 cut(s)	704, 2905
DraI	TTTAAA	2 cut(s)	1713, 2488
DraIII	CACNNNGTG	2 cut(s)	3032, 3902
DrdI	GACNNNNNNGTC	1 cut(s)	3173
DseDI	GACNNNNNNGTC	1 cut(s)	3173
EaeI	YGGCCR	2 cut(s)	2281, 4369
Eam1104I	CTCTTC	6 cut(s)	24, 724, 1347, 2167, 3054, 3864
EarI	CTCTTC	6 cut(s)	24, 724, 1347, 2167, 3054, 3864
Eco130I	CCWWGG	2 cut(s)	1825, 4466
Eco147I	AGGCCT	1 cut(s)	1511
Eco24I	GRGCYC	1 cut(s)	3214
Eco31I	GGTCTC	4 cut(s)	148, 381, 652, 2217
Eco32I	GATATC	2 cut(s)	1699, 4271
Eco47I	GGWCC	7 cut(s)	46, 484, 2180, 2352, 3218, 3245, 4445
Eco47III	AGCGCT	1 cut(s)	1373
Eco57I	CTGAAG	7 cut(s)	393, 1980, 2834, 3036, 3081, 3567, 4124
Eco72I	CACGTG	1 cut(s)	4939
Eco81I	CCTNAGG	1 cut(s)	2572
Eco88I	CYCGRG	1 cut(s)	1347
EcoNI	CCTNNNNNAGG	2 cut(s)	1502, 1734
EcoO109I	RGGNCCY	4 cut(s)	46, 1004, 2180, 2352
EcoRI	GAATTC	1 cut(s)	250
EcoRV	GATATC	2 cut(s)	1699, 4271
EcoT14I	CCWWGG	2 cut(s)	1825, 4466
EcoT22I	ATGCAT	1 cut(s)	3703
EcoT38I	GRGCYC	1 cut(s)	3214
ErhI	CCWWGG	2 cut(s)	1825, 4466
Esp3I	CGTCTC	2 cut(s)	530, 3320
FalI	AAGNNNNNCTT	6 cut(s)	586, 618, 1621, 1653, 4295, 4327
FaqI	GGGAC	5 cut(s)	32, 242, 2166, 2338, 3204
FauI	CCCGC	4 cut(s)	16, 872, 1945, 5022
FauNDI	CATATG	2 cut(s)	2647, 2746
FblI	GTMKAC	6 cut(s)	177, 935, 1677, 2258, 2501, 3514
FokI	GGATG	5 cut(s)	2522, 3505, 4709, 5045, 5068
FriOI	GRGCYC	1 cut(s)	3214
FspI	TGCGCA	2 cut(s)	3482, 4329
GlaI	GCGC	6 cut(s)	235, 269, 1373, 3482, 4329, 4926
GsaI	CCCAGC	1 cut(s)	2187
GsuI	CTGGAG	9 cut(s)	300, 1689, 1761, 1875, 2241, 2472, 3575, 3933, 4502
HaeII	RGCGCY	2 cut(s)	237, 1375
HgaI	GACGC	2 cut(s)	371, 4343
HhaI	GCGC	6 cut(s)	236, 270, 1374, 3483, 4330, 4927
Hin1I	GRCGYC	1 cut(s)	2835
Hin6I	GCGC	6 cut(s)	234, 268, 1372, 3481, 4328, 4925
HinP1I	GCGC	6 cut(s)	234, 268, 1372, 3481, 4328, 4925
HincII	GTYRAC	1 cut(s)	2736
HindII	GTYRAC	1 cut(s)	2736
HindIII	AAGCTT	2 cut(s)	653, 4778
Hpy99I	CGWCG	1 cut(s)	4655
HpyCH4IV	ACGT	8 cut(s)	751, 1073, 2835, 2959, 3313, 4525, 4653, 4938
HpyF10VI	GCNNNNNNNGC	9 cut(s)	233, 295, 338, 1871, 2870, 3134, 3773, 3957, 5020
HpySE526I	ACGT	8 cut(s)	751, 1073, 2835, 2959, 3313, 4525, 4653, 4938
Hsp92I	GRCGYC	1 cut(s)	2835
HspAI	GCGC	6 cut(s)	234, 268, 1372, 3481, 4328, 4925
KflI	GGGWCCC	1 cut(s)	2180
Kpn2I	TCCGGA	3 cut(s)	358, 2816, 3087
LguI	GCTCTTC	2 cut(s)	1347, 3864
LweI	GCATC	7 cut(s)	1651, 2750, 2860, 4024, 4146, 4341, 4733
MabI	ACCWGGT	1 cut(s)	118
MaeII	ACGT	8 cut(s)	751, 1073, 2835, 2959, 3313, 4525, 4653, 4938
MfeI	CAATTG	3 cut(s)	1362, 2874, 3153
MflI	RGATCY	9 cut(s)	196, 509, 841, 1339, 1831, 2819, 3541, 3674, 4461
MhlI	GDGCHC	5 cut(s)	1727, 1974, 2540, 3109, 3214
MlsI	TGGCCA	1 cut(s)	2283
MluNI	TGGCCA	1 cut(s)	2283
MmeI	TCCRAC	4 cut(s)	176, 2098, 3613, 4075
Mox20I	TGGCCA	1 cut(s)	2283
Mph1103I	ATGCAT	1 cut(s)	3703
MroI	TCCGGA	3 cut(s)	358, 2816, 3087
MroXI	GAANNNNTTC	3 cut(s)	397, 706, 1636
MscI	TGGCCA	1 cut(s)	2283
MslI	CAYNNNNRTG	4 cut(s)	2024, 2896, 2906, 3476
Msp20I	TGGCCA	1 cut(s)	2283
MspA1I	CMGCKG	2 cut(s)	413, 4374
MunI	CAATTG	3 cut(s)	1362, 2874, 3153
Mva1269I	GAATGC	2 cut(s)	324, 3013
MvnI	CGCG	1 cut(s)	2565
MwoI	GCNNNNNNNGC	9 cut(s)	233, 295, 338, 1871, 2870, 3134, 3773, 3957, 5020
NciI	CCSGG	3 cut(s)	241, 779, 4878
NcoI	CCATGG	1 cut(s)	1825
NdeI	CATATG	2 cut(s)	2647, 2746
NheI	GCTAGC	2 cut(s)	623, 875
NsbI	TGCGCA	2 cut(s)	3482, 4329
NsiI	ATGCAT	1 cut(s)	3703
NspI	RCATGY	2 cut(s)	3456, 3705
OliI	CACNNNNGTG	2 cut(s)	2024, 2906
PagI	TCATGA	2 cut(s)	2764, 2797
PaqCI	CACCTGC	2 cut(s)	688, 5034
PasI	CCCWGGG	1 cut(s)	2969
PceI	AGGCCT	1 cut(s)	1511
PciI	ACATGT	1 cut(s)	3452
PciSI	GCTCTTC	2 cut(s)	1347, 3864
PctI	GAATGC	2 cut(s)	324, 3013
PdmI	GAANNNNTTC	3 cut(s)	397, 706, 1636
PflMI	CCANNNNNTGG	1 cut(s)	2290
PinAI	ACCGGT	2 cut(s)	704, 2905
PmaCI	CACGTG	1 cut(s)	4939
PmlI	CACGTG	1 cut(s)	4939
Ppu21I	YACGTR	2 cut(s)	4526, 4939
PpuMI	RGGWCCY	3 cut(s)	46, 2180, 2352
PscI	ACATGT	1 cut(s)	3452
PshAI	GACNNNNGTC	1 cut(s)	4403
PshBI	ATTAAT	2 cut(s)	1598, 3999
PsiI	TTATAA	1 cut(s)	2061
Psp5II	RGGWCCY	3 cut(s)	46, 2180, 2352
PspCI	CACGTG	1 cut(s)	4939
PspFI	CCCAGC	1 cut(s)	2183
PspPPI	RGGWCCY	3 cut(s)	46, 2180, 2352
PsrI	GAACNNNNNNTAC	2 cut(s)	4188, 4220
PstI	CTGCAG	5 cut(s)	346, 685, 2437, 3687, 4816
PstNI	CAGNNNCTG	2 cut(s)	89, 260
PsuI	RGATCY	9 cut(s)	196, 509, 841, 1339, 1831, 2819, 3541, 3674, 4461
PvuII	CAGCTG	1 cut(s)	413
RseI	CAYNNNNRTG	4 cut(s)	2024, 2896, 2906, 3476
SapI	GCTCTTC	2 cut(s)	1347, 3864
ScaI	AGTACT	2 cut(s)	3412, 3750
SduI	GDGCHC	5 cut(s)	1727, 1974, 2540, 3109, 3214
SexAI	ACCWGGT	1 cut(s)	118
SfaNI	GCATC	7 cut(s)	1651, 2750, 2860, 4024, 4146, 4341, 4733
SfcI	CTRYAG	5 cut(s)	342, 681, 2433, 3683, 4812
SgrAI	CRCCGGYG	1 cut(s)	2905
SinI	GGWCC	7 cut(s)	46, 484, 2180, 2352, 3218, 3245, 4445
SmiMI	CAYNNNNRTG	4 cut(s)	2024, 2896, 2906, 3476
SmlI	CTYRAG	3 cut(s)	869, 1235, 4826
SmoI	CTYRAG	3 cut(s)	869, 1235, 4826
SpeI	ACTAGT	3 cut(s)	155, 689, 3823
SseBI	AGGCCT	1 cut(s)	1511
SsiI	CCGC	9 cut(s)	23, 312, 373, 879, 1952, 3054, 3539, 4372, 5029
SspI	AATATT	4 cut(s)	957, 1849, 3047, 4320
StuI	AGGCCT	1 cut(s)	1511
StyI	CCWWGG	2 cut(s)	1825, 4466
TaiI	ACGT	8 cut(s)	754, 1076, 2838, 2962, 3316, 4528, 4656, 4941
TaqI	TCGA	8 cut(s)	137, 673, 2345, 3274, 3947, 4182, 4842, 5018
TaqII	GACCGA	1 cut(s)	634
TatI	WGTACW	9 cut(s)	796, 1564, 2016, 2107, 2476, 3410, 3748, 4251, 5078
TauI	GCSGC	1 cut(s)	4374
TspGWI	ACGGA	2 cut(s)	1760, 2474
Van91I	CCANNNNNTGG	1 cut(s)	2290
VneI	GTGCAC	1 cut(s)	1723
VpaK11BI	GGWCC	7 cut(s)	46, 484, 2180, 2352, 3218, 3245, 4445
VspI	ATTAAT	2 cut(s)	1598, 3999
XagI	CCTNNNNNAGG	2 cut(s)	1502, 1734
XbaI	TCTAGA	2 cut(s)	2620, 4357
XceI	RCATGY	2 cut(s)	3456, 3705
XmaJI	CCTAGG	1 cut(s)	4466
XmiI	GTMKAC	6 cut(s)	177, 935, 1677, 2258, 2501, 3514
XmnI	GAANNNNTTC	3 cut(s)	397, 706, 1636
ZraI	GACGTC	1 cut(s)	2836
ZrmI	AGTACT	2 cut(s)	3412, 3750
Zsp2I	ATGCAT	1 cut(s)	3703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.