pycom10g21640

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014072
Physical Location & Seq
Reverse (-)
24217328 .. 24218340
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 930 bp
ATGGAAGCAGCCAATATTCCTACGCCAAGCCCAATTTGGAACCTAGGGTGCCCTAATCTCACAGTATTAAAACCCCTTCATTTGGAACTTCTTTTACCAACCAAATATAAAACCCACATTTCGACCCACAAGCATCTCAAGCACTGCTGCTACTTCTCTTTCCCACATAAGATGGCCAAACTTCAACAAAATCTAGTGCAAGGTTTAGCGAAACCCTACAAATCCAGAGAATATTATCCTCACAAAGCTAAAGGGATATCCATCTTGGCTTTTTTCTTCTCTATACTAATTTACATTTGCATCTTCTATATCTTCAACATCTCCCTCTCAACTGTCTTCAGCAACTCCAAGTTCTGGTTTGCCATATCCAACACCCTCATCCTCATTATTGCCGTCGACTGTGGCGCATTCTCTTCGGCCTGCAAAGACCAACAAGACCATTTTTACCAAGAGTACATGATGCATAGCCAAGCAGCTCGTAGTGCTTCCTCATTTGTTTCCCAATACCCTCAAATTGTCAACAAAAGCAGTCCCAAGCAATTAGAGGCGGGAAACAATAGGAAAACAAAGAATGAAGAAGTACTCCTCGTACCTCAAAATACAGAAATCGTCCAAGAAAAGAGGGTAGTCCACTTGTCGAAGGGCGATAATGATCAGAATAAAAGTTGTAGCACTGGAAGGGAAAATGTTCGGGAAAAAACTTGTCGGCGAAGTAAGTCTGAGAAAGCGAAAAGAGGAGTGATCATCAATGAGAGGAAGAACACTCCAAGGAGGTCAGAGACGACTTATCAGAAGCACAAACCAACTGCTGATAAAGACAATGAATTTTCGACCATGTCTAACGAAGAACTAAACAAAAGAGCCGAAGAGTTTATTCAGAGGTTTAACAGACAAATTAGGCTTCAATCAACAGCTACAACCTTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

310

Amino Acids

35.63

Weight (kDa)

9.61

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 282 - 303 2.8e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30190 AT2G34610
fragaria_vesca FvH4_3g05300 FvH4_6g37202
malus_domestica MD05G1281700.v1.1 MD10G1260500.v1.1
prunus_persica Prupe.4G082900_v2.0.a1
pyrus_communis pycom10g21640
rosa_laevigata RLG00000032108
rosa_multiflora Rmu_ssc0000422.1_g000035
rosa_roxburghii Rroxscaffold_1G00062150
rosa_rugosa Rorug05G0018200
rosa_samantha Rh5AG113000 Rh5BG109700 Rh5CG121500 Rh5DG108800
rosa_wichuraiana Rw5G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccB7I CCANNNNNTGG 1 cut(s) 354
AccI GTMKAC 1 cut(s) 396
AciI CCGC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 824
AcuI CTGAAG 1 cut(s) 322
AfaI GTAC 3 cut(s) 455, 582, 591
AfiI CCNNNNNNNGG 2 cut(s) 82, 354
AgsI TTSAA 3 cut(s) 185, 316, 905
AluBI AGCT 3 cut(s) 248, 476, 914
AluI AGCT 3 cut(s) 248, 476, 914
Alw26I GTCTC 1 cut(s) 773
AoxI GGCC 2 cut(s) 174, 417
ApeKI GCWGC 3 cut(s) 8, 147, 473
ApoI RAATTY 1 cut(s) 824
Asp700I GAANNNNTTC 1 cut(s) 687
AspA2I CCTAGG 1 cut(s) 43
AspLEI GCGC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 53
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 328
BbvI GCAGC 3 cut(s) 20, 134, 485
BccI CCATC 2 cut(s) 166, 269
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BclI TGATCA 2 cut(s) 652, 741
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 2 cut(s) 44, 194
BisI GCNGC 3 cut(s) 9, 148, 474
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 3 cut(s) 10, 149, 475
BmcAI AGTACT 1 cut(s) 582
BmiI GGNNCC 2 cut(s) 41, 50
BmsI GCATC 3 cut(s) 142, 309, 450
BpiI GAAGAC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 2 cut(s) 260, 651
BsaJI CCNNGG 2 cut(s) 43, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 354
Bse1I ACTGG 1 cut(s) 679
Bse8I GATNNNNATC 2 cut(s) 260, 651
BseDI CCNNGG 2 cut(s) 43, 767
BseGI GGATG 1 cut(s) 378
BseJI GATNNNNATC 2 cut(s) 260, 651
BseLI CCNNNNNNNGG 2 cut(s) 82, 354
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 679
BseRI GAGGAG 2 cut(s) 575, 750
BseSI GKGCMC 1 cut(s) 53
BseXI GCAGC 3 cut(s) 20, 134, 485
BshFI GGCC 2 cut(s) 176, 419
BshNI GGYRCC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 2 cut(s) 82, 354
BsmAI GTCTC 1 cut(s) 773
BsmBI CGTCTC 1 cut(s) 773
BsmFI GGGAC 1 cut(s) 516
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 2 cut(s) 176, 419
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 652, 741
BspACI CCGC 1 cut(s) 548
BspANI GGCC 2 cut(s) 176, 419
BspCNI CTCAG 1 cut(s) 712
BspLI GGNNCC 2 cut(s) 41, 50
BspT107I GGYRCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 679
BssECI CCNNGG 2 cut(s) 43, 767
BssMI GATC 2 cut(s) 652, 741
BssT1I CCWWGG 2 cut(s) 43, 767
Bst4CI ACNGT 3 cut(s) 64, 334, 401
Bst6I CTCTTC 2 cut(s) 418, 861
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 1 cut(s) 720
BstF5I GGATG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 2 cut(s) 655, 744
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 2 cut(s) 652, 741
BstMWI GCNNNNNNNGC 2 cut(s) 139, 482
BstSLI GKGCMC 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 20, 134, 485
BstV2I GAAGAC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 176, 419
BtsCI GGATG 1 cut(s) 378
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 142, 672
Cac8I GCNNGC 1 cut(s) 421
CfoI GCGC 1 cut(s) 407
Csp6I GTAC 3 cut(s) 454, 581, 590
CviAII CATG 2 cut(s) 457, 835
CviQI GTAC 3 cut(s) 454, 581, 590
DdeI CTNAG 1 cut(s) 720
DpnI GATC 2 cut(s) 654, 743
DpnII GATC 2 cut(s) 652, 741
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 418, 861
EarI CTCTTC 2 cut(s) 418, 861
Eco130I CCWWGG 2 cut(s) 43, 767
Eco32I GATATC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 43, 767
EcoT22I ATGCAT 1 cut(s) 465
ErhI CCWWGG 2 cut(s) 43, 767
Esp3I CGTCTC 1 cut(s) 773
FaeI CATG 2 cut(s) 460, 838
FaiI YATR 8 cut(s) 108, 168, 284, 309, 365, 458, 465, 836
FaqI GGGAC 1 cut(s) 516
FatI CATG 2 cut(s) 456, 834
FauI CCCGC 1 cut(s) 541
FbaI TGATCA 2 cut(s) 652, 741
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 3 cut(s) 9, 148, 474
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 3 cut(s) 9, 148, 474
FspBI CTAG 2 cut(s) 44, 194
GlaI GCGC 1 cut(s) 406
GluI GCNGC 3 cut(s) 9, 148, 474
HaeIII GGCC 2 cut(s) 176, 419
HhaI GCGC 1 cut(s) 407
Hin1II CATG 2 cut(s) 460, 838
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HincII GTYRAC 2 cut(s) 397, 520
HindII GTYRAC 2 cut(s) 397, 520
Hpy166II GTNNAC 3 cut(s) 397, 520, 631
Hpy188I TCNGA 5 cut(s) 657, 721, 778, 792, 879
Hpy188III TCNNGA 2 cut(s) 225, 692
Hpy8I GTNNAC 3 cut(s) 397, 520, 631
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 3 cut(s) 86, 634, 672
HpyCH4III ACNGT 3 cut(s) 64, 334, 401
HpyCH4V TGCA 4 cut(s) 199, 300, 423, 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 482
HpyF3I CTNAG 1 cut(s) 720
Hsp92II CATG 2 cut(s) 460, 838
HspAI GCGC 1 cut(s) 405
Ksp22I TGATCA 2 cut(s) 652, 741
Kzo9I GATC 2 cut(s) 652, 741
LpnPI CCDG 4 cut(s) 238, 340, 433, 660
Lsp1109I GCAGC 3 cut(s) 20, 134, 485
LweI GCATC 3 cut(s) 142, 309, 450
MaeI CTAG 2 cut(s) 44, 194
MalI GATC 2 cut(s) 654, 743
MboI GATC 2 cut(s) 652, 741
MboII GAAGA 9 cut(s) 268, 295, 304, 328, 405, 587, 769, 857, 878
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 6 cut(s) 33, 288, 513, 539, 824, 894
MluNI TGGCCA 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 687
MscI TGGCCA 1 cut(s) 176
MseI TTAA 3 cut(s) 68, 885, 928
Msp20I TGGCCA 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 139, 482
NdeII GATC 2 cut(s) 652, 741
NlaIII CATG 2 cut(s) 460, 838
NlaIV GGNNCC 2 cut(s) 41, 50
NsiI ATGCAT 1 cut(s) 465
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 687
PflFI GACNNNGTC 1 cut(s) 835
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 3 cut(s) 10, 149, 475
PspN4I GGNNCC 2 cut(s) 41, 50
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PsyI GACNNNGTC 1 cut(s) 835
RsaI GTAC 3 cut(s) 455, 582, 591
RsaNI GTAC 3 cut(s) 454, 581, 590
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 3 cut(s) 68, 885, 928
SatI GCNGC 3 cut(s) 9, 148, 474
Sau3AI GATC 2 cut(s) 652, 741
ScaI AGTACT 1 cut(s) 582
SduI GDGCHC 1 cut(s) 53
SetI ASST 9 cut(s) 45, 205, 250, 478, 595, 776, 884, 916, 923
SfaNI GCATC 3 cut(s) 142, 309, 450
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 6 cut(s) 33, 288, 513, 539, 824, 894
SsiI CCGC 1 cut(s) 548
SspI AATATT 2 cut(s) 16, 233
SspMI CTAG 2 cut(s) 44, 194
StyI CCWWGG 2 cut(s) 43, 767
TaaI ACNGT 3 cut(s) 64, 334, 401
TaqI TCGA 4 cut(s) 122, 396, 638, 830
TasI AATT 6 cut(s) 33, 288, 513, 539, 824, 894
TatI WGTACW 2 cut(s) 453, 580
Tru1I TTAA 3 cut(s) 68, 885, 928
Tru9I TTAA 3 cut(s) 68, 885, 928
TscAI CASTG 2 cut(s) 149, 679
TseI GCWGC 3 cut(s) 8, 147, 473
TspDTI ATGAA 3 cut(s) 68, 588, 837
TspRI CASTG 2 cut(s) 149, 679
Tth111I GACNNNGTC 1 cut(s) 835
Van91I CCANNNNNTGG 1 cut(s) 354
XapI RAATTY 1 cut(s) 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XmaJI CCTAGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 2 cut(s) 44, 194
ZrmI AGTACT 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.