Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004483

Physical Location & Seq

Genomic Coordinates Forward (+)

24439945 .. 24441002

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGAACTTTTCCAAAAATTTCAGGGTGAGAACTATGTATGGAGCAATGGCAACCACAGTCTTTGCCAGCGTTTATCTTGCGGGGGCTTATATATTTCGTGCATGCGCTATAAGAAAAGAAGAGGCACAAGGCCATAGACTTACGAGGTCCATGTCCATCGCAGTCCTCCAAGGAGGGCAGCTTGCCTTGCAGAGATTGCTTGAATATCATGAAGTTCGAGCAGACAAATCAGCAGTGGAGGTAGCTGAATGTGAGTTGAGGACTTTCCTTGTGGAGCAATACCCTGATTACAAGAAGCTGCAGTCAGTTGTTGCGAAGCTTGAAATGAGTGGAAAAGAATCCAAGGCAATTGAAATATTGGCAAAAGCGACAGCAAAGGCACATAACGAAGGAAAAAAACATGAAGCATATGAAAATGAGATGCTATTAGTGGAAATGCTTATATACAAGGGTGATTTTGAGGAGGCGCTACGCCGTGAATGCTTGCGGCACGTAGAGATTTCAGATGCAAGGCGTCCCCTGTACAAGTCTATTATTTACATCATGTTAAAGTGCGACAAGGATCAAATTATAGAATGCTGGAAAGAATTTAATGTTCTGAAAGAATTCCAATCTTTGCCTAGTAACAACGAAAGCTTGGAAGAAAGTCACATTTATAATCTCAGTACAAATTACGACGAGTTCGAGAAGGTCGTCAACATACTAAGAAATGACATAGAGGGGAAAGCATGGAAGAAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

28.88

Weight (kDa)

8.15

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34530 AT2G34530 AT2G34530 AT2G34530 AT2G34530
fragaria_vesca	FvH4_3g05560
malus_domestica	MD05G1283900.v1.1 MD10G1262200.v1.1
prunus_persica	Prupe.4G080500_v2.0.a1
pyrus_communis	pycom05g26300 pycom10g21840
rosa_chinensis	RchiOBHm_Chr5g0014111 RchiOBHm_Chr5g0014141
rosa_laevigata	RLG00000032082 RLG00000032085
rosa_multiflora	Rmu_sc0007767.1_g000017 Rmu_sc0007767.1_g000022
rosa_roxburghii	Rroxscaffold_1G00062460 Rroxscaffold_1G00062480 Rroxscaffold_1G00062500 Rroxscaffold_1G00062520
rosa_rugosa	Rorug05G0015700 Rorug05G0016000
rosa_samantha	Rh5AG109700 Rh5AG109800 Rh5BG106700 Rh5CG118400 Rh5CG118900 Rh5DG105200 Rh5DG105400
rosa_wichuraiana	Rw5G009580 Rw5G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AciI	CCGC	2 cut(s)	83, 490
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	3 cut(s)	19, 590, 608
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	2 cut(s)	527, 670
AgsI	TTSAA	3 cut(s)	206, 326, 356
AluBI	AGCT	5 cut(s)	184, 248, 301, 322, 639
AluI	AGCT	5 cut(s)	184, 248, 301, 322, 639
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	181, 301
ApoI	RAATTY	3 cut(s)	19, 590, 608
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	2 cut(s)	110, 472
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	16, 40, 467
AvaII	GGWCC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	193, 288
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	473
BisI	GCNGC	3 cut(s)	182, 302, 491
BlsI	GCNGC	3 cut(s)	183, 303, 492
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmsI	GCATC	2 cut(s)	414, 499
BsaAI	YACGTR	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	172, 345
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	172, 345
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	679
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	193, 288
BshFI	GGCC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	2 cut(s)	488, 584
BsnI	GGCC	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	1 cut(s)	565
BspACI	CCGC	2 cut(s)	83, 490
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	1 cut(s)	573
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	172, 345
BssMI	GATC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	517
BssT1I	CCWWGG	2 cut(s)	172, 345
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	496
BstC8I	GCNNGC	4 cut(s)	70, 106, 186, 488
BstDEI	CTNAG	2 cut(s)	665, 707
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	2 cut(s)	110, 472
BstKTI	GATC	1 cut(s)	568
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 199, 483
BstNSI	RCATGY	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	193, 288
BsuRI	GGCC	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	4 cut(s)	70, 106, 186, 488
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	2 cut(s)	110, 472
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	526, 669
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	6 cut(s)	105, 154, 212, 404, 547, 732
CviJI	RGCY	7 cut(s)	89, 135, 184, 248, 301, 322, 639
CviKI_1	RGCY	7 cut(s)	89, 135, 184, 248, 301, 322, 639
CviQI	GTAC	2 cut(s)	526, 669
DdeI	CTNAG	2 cut(s)	665, 707
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	172, 345
Eco47I	GGWCC	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	608
EcoT14I	CCWWGG	2 cut(s)	172, 345
ErhI	CCWWGG	2 cut(s)	172, 345
FaeI	CATG	6 cut(s)	108, 157, 215, 407, 550, 735
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	6 cut(s)	104, 153, 211, 403, 546, 731
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	182, 302, 491
Fsp4HI	GCNGC	3 cut(s)	182, 302, 491
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	2 cut(s)	109, 471
GluI	GCNGC	3 cut(s)	182, 302, 491
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	135
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	110, 472
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	6 cut(s)	108, 157, 215, 407, 550, 735
Hin6I	GCGC	2 cut(s)	108, 470
HinP1I	GCGC	2 cut(s)	108, 470
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	2 cut(s)	320, 637
HinfI	GANTC	1 cut(s)	341
HphI	GGTGA	3 cut(s)	16, 40, 467
Hpy166II	GTNNAC	2 cut(s)	7, 700
Hpy188I	TCNGA	2 cut(s)	508, 603
Hpy188III	TCNNGA	2 cut(s)	212, 688
Hpy8I	GTNNAC	2 cut(s)	7, 700
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	2 cut(s)	386, 685
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	104, 193, 304, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 199, 483
HpyF3I	CTNAG	2 cut(s)	665, 707
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	6 cut(s)	108, 157, 215, 407, 550, 735
HspAI	GCGC	2 cut(s)	108, 470
Kzo9I	GATC	1 cut(s)	565
LmnI	GCTCC	2 cut(s)	44, 277
LpnPI	CCDG	5 cut(s)	10, 82, 300, 536, 568
Lsp1109I	GCAGC	2 cut(s)	193, 288
LweI	GCATC	2 cut(s)	414, 499
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	626, 650
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	3 cut(s)	134, 656, 748
MfeI	CAATTG	1 cut(s)	351
MluCI	AATT	6 cut(s)	19, 351, 570, 590, 608, 673
MnlI	CCTC	9 cut(s)	118, 141, 170, 179, 235, 255, 457, 460, 715
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	2 cut(s)	551, 594
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	488, 584
MwoI	GCNNNNNNNGC	3 cut(s)	190, 199, 483
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	6 cut(s)	108, 157, 215, 407, 550, 735
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PagI	TCATGA	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	2 cut(s)	684, 693
PctI	GAATGC	2 cut(s)	488, 584
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	183, 303, 492
Ppu21I	YACGTR	1 cut(s)	496
PsiI	TTATAA	1 cut(s)	660
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	306
RsaI	GTAC	2 cut(s)	527, 670
RsaNI	GTAC	2 cut(s)	526, 669
SaqAI	TTAA	2 cut(s)	551, 594
SatI	GCNGC	3 cut(s)	182, 302, 491
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	1 cut(s)	150
SetI	ASST	9 cut(s)	152, 186, 246, 250, 303, 324, 498, 641, 696
SfaNI	GCATC	2 cut(s)	414, 499
SfcI	CTRYAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	150
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	6 cut(s)	19, 351, 570, 590, 608, 673
SsiI	CCGC	2 cut(s)	83, 490
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	1 cut(s)	624
StyI	CCWWGG	2 cut(s)	172, 345
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	220, 687
TasI	AATT	6 cut(s)	19, 351, 570, 590, 608, 673
TatI	WGTACW	2 cut(s)	525, 668
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	551, 594
Tru9I	TTAA	2 cut(s)	551, 594
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	2 cut(s)	181, 301
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	3 cut(s)	228, 420, 429
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	3 cut(s)	19, 590, 608
XceI	RCATGY	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.