pycom10g21930

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008795
Physical Location & Seq
Forward (+)
24494997 .. 24499002
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1143 bp
ATGGAAGGCGAAGAGGGTCCCACCGTGACCACCGCCGAAACCGCCATCACCACCACCACCACCATCCCCACTGTCACCACATGCGGCACCGATTCCCCCCCACCATTCCCGCCGCACGATTCTGATGTCTCACCCGTTGGATCTCCCGATCGCGCCTCCTCTGAGATTCAACCACAGCCGTCTGATGACCCTGATCAATCGTCTGGGGCTGGTGGTCTCTCTGAGGATCTCAAACAGAAGATTATTAAACAGGTGGAGTATTATTTCAGCGATGAAAACTTGCCCACTGACAATTATATGTCGAGTATGATTAAAAAGAACAAAGAAGGTTATGTTCCTATTTCAGTTATTGCTTCTTTTAGAAAAATGAAGAAGCTCATTCAAGACAATTCGTCCATAGCGGATGCATTGAGGGAGTCTACCCTCCTTGTTGTGAGTTCGAATGGGAAGAAGGTGAAACGGATTCATCCCCTTCCTTCAACTGAAAACAGGGACCCAAAGTGCACTGTTTTGGTGGAGAACCTGCCTGAGGATCATTCGGTGGAGAACCTTAAGACCATATTTGGTGAAGCTGGGAAAATAAAAGATTTATGCATACTTGACCCACATGCATTAGAAGCGTCAACAAAAGGTGGCAAGACTGAGAAGCTGATTAGTAATAAGTTGCATGCCCTTGTGGAGTATGATACCGTGGAGGCTGCTGACAAAGCTGTCACTACTTTAAACAATGAGGGGGATTGGAGAAATGGCATGCGGGTGAAGCTTCTAAAGCAAGTGGGAAAGTATGGACAGAGAAAACAACCCTGGAGGGGTTTTGATTCTGAGAAGAGTAGCGGCAACAGAAGTAACGATCAAACAGGAGACGAGGAGAATCATACTGTAAGTGAGAAACATAATGATGCACGGACAACTGATGAAGAGGACGGAGAGCGAGTTCCCAAAGAGAAAACTGGGCATAGAGGTCGAAATAGGGGGCAACCAGGAAGGCAAAAATACCGTGGGACCAATGGATTTGGTCATGGAACTACATCGGCCAATCACGGCATTGAACCTTCAAAGCCACCACCCGGCCCAAGGATGCCTGATGGAACCAGGGGATTCACAATGGGGCGAGGGCGGACTCCGAGCACCGCCCAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

381

Amino Acids

41.49

Weight (kDa)

6.4

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 81 - 139 6.3e-26 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 531
AccB1I GGYRCC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 419
AccII CGCG 1 cut(s) 153
AclWI GGATC 3 cut(s) 148, 234, 540
AcoI YGGCCR 1 cut(s) 1032
AfiI CCNNNNNNNGG 4 cut(s) 529, 809, 1067, 1074
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 5 cut(s) 170, 383, 480, 1049, 1056
AhdI GACNNNNNGTC 1 cut(s) 391
AjnI CCWGG 3 cut(s) 803, 979, 1091
AloI GAACNNNNNNTCC 2 cut(s) 918, 950
AluBI AGCT 5 cut(s) 376, 572, 649, 710, 763
AluI AGCT 5 cut(s) 376, 572, 649, 710, 763
Alw21I GWGCWC 2 cut(s) 506, 1130
Alw26I GTCTC 3 cut(s) 133, 221, 855
Alw44I GTGCAC 1 cut(s) 502
AlwI GGATC 3 cut(s) 148, 234, 540
AoxI GGCC 2 cut(s) 1032, 1069
ApaLI GTGCAC 1 cut(s) 502
ApeKI GCWGC 1 cut(s) 698
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 4 cut(s) 17, 493, 1002, 1070
AsuC2I CCSGG 1 cut(s) 1068
AsuHPI GGTGA 6 cut(s) 40, 67, 123, 466, 578, 769
AsuII TTCGAA 1 cut(s) 440
AvaII GGWCC 3 cut(s) 17, 493, 1002
AxyI CCTNAGG 1 cut(s) 528
BaeGI GKGCMC 1 cut(s) 506
BanI GGYRCC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 506, 1130
BbvI GCAGC 1 cut(s) 685
BccI CCATC 3 cut(s) 53, 71, 1079
BceAI ACGGC 2 cut(s) 163, 1057
BcgI CGANNNNNNTGC 2 cut(s) 944, 978
BciT130I CCWGG 3 cut(s) 805, 981, 1093
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 1 cut(s) 1068
BcoDI GTCTC 3 cut(s) 133, 221, 855
BfaI CTAG 1 cut(s) 1141
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 531
BisI GCNGC 4 cut(s) 85, 113, 699, 835
BlsI GCNGC 4 cut(s) 86, 114, 700, 836
Bme1390I CCNGG 4 cut(s) 805, 981, 1068, 1093
Bme18I GGWCC 3 cut(s) 17, 493, 1002
BmeRI GACNNNNNGTC 1 cut(s) 391
BmgT120I GGNCC 4 cut(s) 17, 493, 1002, 1070
BmiI GGNNCC 7 cut(s) 18, 19, 88, 494, 495, 1003, 1090
BmrFI CCNGG 4 cut(s) 805, 981, 1068, 1093
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 3 cut(s) 394, 889, 1068
BmuI ACTGGG 1 cut(s) 960
BpmI CTGGAG 1 cut(s) 826
Bpu14I TTCGAA 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 1068
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 5 cut(s) 690, 803, 997, 1073, 1092
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 4 cut(s) 529, 809, 1067, 1074
Bse1I ACTGG 1 cut(s) 955
Bse21I CCTNAGG 1 cut(s) 528
BseBI CCWGG 3 cut(s) 805, 981, 1093
BseDI CCNNGG 5 cut(s) 690, 803, 997, 1073, 1092
BseGI GGATG 4 cut(s) 63, 409, 466, 1083
BseLI CCNNNNNNNGG 4 cut(s) 529, 809, 1067, 1074
BseMII CTCAG 5 cut(s) 153, 213, 519, 633, 813
BseNI ACTGG 1 cut(s) 955
BseRI GAGGAG 2 cut(s) 148, 881
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 1 cut(s) 685
BseYI CCCAGC 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 1034, 1071
BshNI GGYRCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 506, 1130
BsiSI CCGG 1 cut(s) 1068
BslFI GGGAC 3 cut(s) 3, 506, 1015
BslI CCNNNNNNNGG 4 cut(s) 529, 809, 1067, 1074
BsmAI GTCTC 3 cut(s) 133, 221, 855
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 3 cut(s) 3, 506, 1015
BsnI GGCC 2 cut(s) 1034, 1071
Bso31I GGTCTC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 506, 1130
Bsp143I GATC 6 cut(s) 140, 148, 193, 226, 532, 850
BspANI GGCC 2 cut(s) 1034, 1071
BspCNI CTCAG 5 cut(s) 154, 214, 520, 634, 814
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 7 cut(s) 18, 19, 88, 494, 495, 1003, 1090
BspMI ACCTGC 1 cut(s) 531
BspPI GGATC 3 cut(s) 148, 234, 540
BspT104I TTCGAA 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 86
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 955
BssECI CCNNGG 5 cut(s) 690, 803, 997, 1073, 1092
BssMI GATC 6 cut(s) 140, 148, 193, 226, 532, 850
BssT1I CCWWGG 1 cut(s) 1073
Bst2UI CCWGG 3 cut(s) 805, 981, 1093
Bst4CI ACNGT 6 cut(s) 25, 73, 508, 691, 880, 998
Bst6I CTCTTC 3 cut(s) 6, 821, 912
BstAFI CTTAAG 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 669, 752
BstDEI CTNAG 5 cut(s) 162, 222, 528, 642, 822
BstDSI CCRYGG 2 cut(s) 690, 997
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 4 cut(s) 63, 409, 466, 1083
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 6 cut(s) 143, 151, 196, 229, 535, 853
BstMAI GTCTC 3 cut(s) 133, 221, 855
BstMBI GATC 6 cut(s) 140, 148, 193, 226, 532, 850
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 5 cut(s) 41, 617, 707, 760, 769
BstNI CCWGG 3 cut(s) 805, 981, 1093
BstNSI RCATGY 4 cut(s) 84, 611, 671, 754
BstSCI CCNGG 4 cut(s) 803, 979, 1066, 1091
BstSLI GKGCMC 1 cut(s) 506
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 685
BstX2I RGATCY 2 cut(s) 140, 226
BstYI RGATCY 2 cut(s) 140, 226
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 2 cut(s) 1034, 1071
BtgI CCRYGG 2 cut(s) 690, 997
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 4 cut(s) 63, 409, 466, 1083
BtsIMutI CAGTG 3 cut(s) 69, 285, 504
BveI ACCTGC 1 cut(s) 531
Cac8I GCNNGC 2 cut(s) 669, 752
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 4 cut(s) 17, 493, 1002, 1070
CseI GACGC 1 cut(s) 609
CviAII CATG 5 cut(s) 81, 608, 668, 751, 1019
DdeI CTNAG 5 cut(s) 162, 222, 528, 642, 822
DpnI GATC 6 cut(s) 142, 150, 195, 228, 534, 852
DpnII GATC 6 cut(s) 140, 148, 193, 226, 532, 850
DraI TTTAAA 1 cut(s) 723
DrdI GACNNNNNNGTC 1 cut(s) 710
DriI GACNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 710
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 3 cut(s) 6, 821, 912
Eam1105I GACNNNNNGTC 1 cut(s) 391
EarI CTCTTC 3 cut(s) 6, 821, 912
EciI GGCGGA 1 cut(s) 1132
Eco130I CCWWGG 1 cut(s) 1073
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 3 cut(s) 17, 493, 1002
Eco81I CCTNAGG 1 cut(s) 528
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoO109I RGGNCCY 2 cut(s) 17, 493
EcoRII CCWGG 3 cut(s) 803, 979, 1091
EcoT14I CCWWGG 1 cut(s) 1073
EcoT22I ATGCAT 3 cut(s) 409, 596, 613
ErhI CCWWGG 1 cut(s) 1073
Esp3I CGTCTC 1 cut(s) 855
FaeI CATG 5 cut(s) 84, 611, 671, 754, 1022
FaqI GGGAC 3 cut(s) 3, 506, 1015
FatI CATG 5 cut(s) 80, 607, 667, 750, 1018
FauI CCCGC 2 cut(s) 117, 747
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 4 cut(s) 85, 113, 699, 835
FokI GGATG 4 cut(s) 50, 416, 453, 1090
Fsp4HI GCNGC 4 cut(s) 85, 113, 699, 835
FspBI CTAG 1 cut(s) 1141
GlaI GCGC 1 cut(s) 154
GluI GCNGC 4 cut(s) 85, 113, 699, 835
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 826
HaeIII GGCC 2 cut(s) 1034, 1071
HapII CCGG 1 cut(s) 1068
HgaI GACGC 1 cut(s) 609
HhaI GCGC 1 cut(s) 155
Hin1II CATG 5 cut(s) 84, 611, 671, 754, 1022
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 9 cut(s) 92, 119, 166, 416, 463, 818, 871, 1098, 1120
HpaII CCGG 1 cut(s) 1068
HphI GGTGA 6 cut(s) 40, 67, 123, 466, 578, 769
Hpy166II GTNNAC 3 cut(s) 420, 504, 624
Hpy188I TCNGA 6 cut(s) 124, 163, 184, 223, 823, 1125
Hpy188III TCNNGA 2 cut(s) 146, 383
Hpy8I GTNNAC 3 cut(s) 420, 504, 624
HpyAV CCTTC 6 cut(s) 320, 445, 482, 486, 978, 1062
HpyCH4III ACNGT 6 cut(s) 25, 73, 508, 691, 880, 998
HpyCH4V TGCA 6 cut(s) 407, 504, 594, 611, 667, 902
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 617, 707, 760, 769
HpyF3I CTNAG 5 cut(s) 162, 222, 528, 642, 822
Hsp92II CATG 5 cut(s) 84, 611, 671, 754, 1022
HspAI GCGC 1 cut(s) 153
KflI GGGWCCC 2 cut(s) 17, 493
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 6 cut(s) 140, 148, 193, 226, 532, 850
Lsp1109I GCAGC 1 cut(s) 685
LweI GCATC 3 cut(s) 394, 889, 1068
MaeI CTAG 1 cut(s) 1141
MaeIII GTNAC 4 cut(s) 25, 73, 712, 845
MalI GATC 6 cut(s) 142, 150, 195, 228, 534, 852
MboI GATC 6 cut(s) 140, 148, 193, 226, 532, 850
MboII GAAGA 6 cut(s) 23, 250, 382, 460, 838, 929
MflI RGATCY 2 cut(s) 140, 226
MhlI GDGCHC 2 cut(s) 506, 1130
MluCI AATT 2 cut(s) 292, 388
MlyI GAGTC 2 cut(s) 425, 1114
MmeI TCCRAC 1 cut(s) 118
Mph1103I ATGCAT 3 cut(s) 409, 596, 613
MseI TTAA 4 cut(s) 246, 312, 552, 722
MslI CAYNNNNRTG 2 cut(s) 755, 897
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 1 cut(s) 1068
MspR9I CCNGG 4 cut(s) 805, 981, 1068, 1093
MvaI CCWGG 3 cut(s) 805, 981, 1093
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 5 cut(s) 41, 617, 707, 760, 769
NciI CCSGG 1 cut(s) 1068
NdeII GATC 6 cut(s) 140, 148, 193, 226, 532, 850
NlaIII CATG 5 cut(s) 84, 611, 671, 754, 1022
NlaIV GGNNCC 7 cut(s) 18, 19, 88, 494, 495, 1003, 1090
NmuCI GTSAC 3 cut(s) 25, 73, 712
NsiI ATGCAT 3 cut(s) 409, 596, 613
NspI RCATGY 4 cut(s) 84, 611, 671, 754
NspV TTCGAA 1 cut(s) 440
PaeI GCATGC 2 cut(s) 671, 754
PfeI GAWTC 7 cut(s) 92, 119, 166, 463, 818, 871, 1098
PkrI GCNGC 4 cut(s) 86, 114, 700, 836
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 2 cut(s) 424, 1114
PpsI GAGTC 2 cut(s) 424, 1114
PpuMI RGGWCCY 2 cut(s) 17, 493
Psp5II RGGWCCY 2 cut(s) 17, 493
Psp6I CCWGG 3 cut(s) 803, 979, 1091
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 3 cut(s) 803, 979, 1091
PspN4I GGNNCC 7 cut(s) 18, 19, 88, 494, 495, 1003, 1090
PspPI GGNCC 4 cut(s) 17, 493, 1002, 1070
PspPPI RGGWCCY 2 cut(s) 17, 493
PsuI RGATCY 2 cut(s) 140, 226
PvuI CGATCG 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 755, 897
SaqAI TTAA 4 cut(s) 246, 312, 552, 722
SatI GCNGC 4 cut(s) 85, 113, 699, 835
Sau3AI GATC 6 cut(s) 140, 148, 193, 226, 532, 850
Sau96I GGNCC 4 cut(s) 17, 493, 1002, 1070
SchI GAGTC 2 cut(s) 425, 1114
ScrFI CCNGG 4 cut(s) 805, 981, 1068, 1093
SduI GDGCHC 2 cut(s) 506, 1130
SfaNI GCATC 3 cut(s) 394, 889, 1068
SfuI TTCGAA 1 cut(s) 440
SinI GGWCC 3 cut(s) 17, 493, 1002
SmiMI CAYNNNNRTG 2 cut(s) 755, 897
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SphI GCATGC 2 cut(s) 671, 754
Sse9I AATT 2 cut(s) 292, 388
SspMI CTAG 1 cut(s) 1141
StyD4I CCNGG 4 cut(s) 803, 979, 1066, 1091
StyI CCWWGG 1 cut(s) 1073
TaaI ACNGT 6 cut(s) 25, 73, 508, 691, 880, 998
TaqI TCGA 3 cut(s) 302, 440, 964
TasI AATT 2 cut(s) 292, 388
TauI GCSGC 3 cut(s) 87, 115, 837
TfiI GAWTC 7 cut(s) 92, 119, 166, 463, 818, 871, 1098
Tru1I TTAA 4 cut(s) 246, 312, 552, 722
Tru9I TTAA 4 cut(s) 246, 312, 552, 722
TscAI CASTG 3 cut(s) 76, 292, 511
TseFI GTSAC 3 cut(s) 25, 73, 712
TseI GCWGC 1 cut(s) 698
Tsp45I GTSAC 3 cut(s) 25, 73, 712
TspDTI ATGAA 4 cut(s) 288, 383, 455, 930
TspGWI ACGGA 3 cut(s) 475, 919, 939
TspRI CASTG 3 cut(s) 76, 292, 511
Vha464I CTTAAG 1 cut(s) 551
VneI GTGCAC 1 cut(s) 502
VpaK11BI GGWCC 3 cut(s) 17, 493, 1002
XagI CCTNNNNNAGG 1 cut(s) 527
XceI RCATGY 4 cut(s) 84, 611, 671, 754
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 1 cut(s) 1141
Zsp2I ATGCAT 3 cut(s) 409, 596, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.