pycom10g22140

starch synthase 4, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
24599679 .. 24601791
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
ATGCTCGCCCCCGAGTCGTACGATAAAACGACTGTTAGTCGTTGTGCCAAAGAAACCACTTCTTCTCCCTCTTCACCGAAACAGGAGAGAGAAAGCTTGAGATCATCAATGGCGGTCAGACTAACGACCTGGTTCGTCACCCAGGGGCTCAGCATTACCGGCTCCAACTCCACCTCCCGCCACCGCTCATATTCAAACGCTCGCTTTTCGTTTCACTGCTCTCCTGCTTCTTCCTGCAAGCTCCGGCACCGTAATCTCAGTTGCAATTGCGTGAATAAGAGGCAGAGGCTGAGGAAGAAAGGCTCGGTCGAACAGCCTTCGACGAGTACAGATTTCCGGTTCAATGGCGACGACGACTCCGAATCTGACGGTGCTTCTTCGGCGGGCGTCATCGTCCCCATTGAAAGCGTATCTGATGACGAAGCTCCCACTGCCAATGGAAACGATTCGATTTCGACAACTTTAACTCCGTCTGATCAAGCAAATCCTTCGGCGTATAATACTCAGGATTTGGTTGGCATGATTAGAAATGCAGAGAAAAATATCCATCTTCTCAACCGGGCGCGGGTAAATGCGCTTGAAAACCTTGACAAGATTCTCGGTGAGAAGGAGGCATTGCAAGGACAGATGAATGCTTTGGAGATGAGATTGGCAGAGACCGATGCGCGGATTAGAGTAGCTGCCCAGGAAAAAATAAAGGTGGAACTTTTGGAAAACCAGTTAGATAAGATGCAGAATGAACTGAATCTCAATGGTGACCGTGGTGTTGAAAGAGGTCAGGTGGAGATTTTTGAGAATGAAGACCAGCTGTTTAATGAAGAAGCTCCTCTACCATACAGAACTAGCATCAATGCTCTTGTTGCCAATCTGAATGCATTGAGATTGGAAAATCAATCCCTCAAGAATGATGTAGAAGCACTCAGGGAGGAGCTTAGCTTTGTGAAGAATACGGATGAACGGGTGGTAATGCTGGAAAATCAACGGTCGACTTTAGAGTCTGCGTTGAAAGAGTTGGAATCGAAATTGTCAGTTTCTCAGGAAGATGTATCCAAACTATCCAATCTTAAAGTTGAATGCAAAGGATTATGGGAGAAGGTGGAGAATTTGCAGCTACTGCTAGATAAGTCAACCAAACAGGCAGATCAAGCTATTGTAGTTTTACAGCAGAACCAAGAGATTCAAAAGAAAGTTGATAAATTAGAAGAATCTATTGAAACAGCTAATGTCTATAGAGAGTCATCAGAAAATATGCAACGATACAATGAGCTGATGCAAAAGAAAATAAAACTTATGGAGGACCGGCTTCAAAGATCTGACGAAGAGATACATTCTTATGTTCAATTATATCAAGAATCTGTGGAGGAATTTCAAGATACACTAAATACTCTAAAAGAAGAAAGCAAGAGAAGGGCAGTTGATGAACCTGTGGATGATATGCCATGGGAATTTTGGAGTCGTTTATTGCTTATCGATCGATGGTTGGTTGTTTGA

Protein Analysis

497

Amino Acids

56.46

Weight (kDa)

5.05

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 986
AccII CGCG 2 cut(s) 565, 667
AciI CCGC 6 cut(s) 113, 178, 184, 383, 565, 667
AcsI RAATTY 3 cut(s) 1102, 1364, 1445
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 2 cut(s) 20, 328
AfiI CCNNNNNNNGG 2 cut(s) 565, 666
AhdI GACNNNNNGTC 1 cut(s) 36
AjnI CCWGG 3 cut(s) 128, 141, 684
Alw26I GTCTC 1 cut(s) 650
AlwNI CAGNNNCTG 2 cut(s) 289, 1114
Ama87I CYCGRG 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 680, 1108
ApoI RAATTY 3 cut(s) 1102, 1364, 1445
Asp700I GAANNNNTTC 1 cut(s) 445
AspLEI GCGC 3 cut(s) 565, 577, 667
AspS9I GGNCC 1 cut(s) 1297
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 4 cut(s) 66, 130, 614, 767
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 1297
BanI GGYRCC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 150
BarI GAAGNNNNNNTAC 2 cut(s) 813, 845
BbsI GAAGAC 1 cut(s) 807
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 667, 1120
BccI CCATC 2 cut(s) 555, 1470
BcgI CGANNNNNNTGC 2 cut(s) 471, 505
BciT130I CCWGG 3 cut(s) 130, 143, 686
BciVI GTATCC 1 cut(s) 1057
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 2 cut(s) 843, 1118
BfmI CTRYAG 1 cut(s) 1228
BfuI GTATCC 1 cut(s) 1057
BglII AGATCT 1 cut(s) 1310
BisI GCNGC 2 cut(s) 681, 1109
BlpI GCTNAGC 2 cut(s) 149, 932
BlsI GCNGC 2 cut(s) 682, 1110
Bme1390I CCNGG 4 cut(s) 130, 143, 560, 686
Bme18I GGWCC 1 cut(s) 1297
BmeRI GACNNNNNGTC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 1297
BmiI GGNNCC 2 cut(s) 163, 248
BmrFI CCNGG 4 cut(s) 130, 143, 560, 686
BmsI GCATC 4 cut(s) 652, 720, 855, 1260
BpiI GAAGAC 1 cut(s) 807
Bpu10I CCTNAGC 1 cut(s) 290
Bpu1102I GCTNAGC 2 cut(s) 149, 932
BpuEI CTTGAG 2 cut(s) 118, 884
BpuMI CCSGG 1 cut(s) 560
Bsa29I ATCGAT 2 cut(s) 1470, 1474
BsaHI GRCGYC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 5 cut(s) 141, 142, 684, 760, 1439
BsaWI WCCGGW 1 cut(s) 336
BsaXI ACNNNNNCTCC 8 cut(s) 49, 79, 158, 188, 341, 371, 451, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 666
Bse118I RCCGGY 2 cut(s) 158, 1299
Bse1I ACTGG 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 614
BseBI CCWGG 3 cut(s) 130, 143, 686
BseCI ATCGAT 2 cut(s) 1470, 1474
BseDI CCNNGG 5 cut(s) 141, 142, 684, 760, 1439
BseGI GGATG 2 cut(s) 958, 1435
BseLI CCNNNNNNNGG 2 cut(s) 565, 666
BseMI GCAATG 1 cut(s) 614
BseMII CTCAG 6 cut(s) 163, 271, 281, 518, 934, 1049
BseNI ACTGG 1 cut(s) 718
BseRI GAGGAG 2 cut(s) 816, 941
BseXI GCAGC 2 cut(s) 667, 1120
Bsh1236I CGCG 2 cut(s) 565, 667
Bsh1285I CGRYCG 3 cut(s) 309, 986, 1474
BshNI GGYRCC 1 cut(s) 246
BshVI ATCGAT 2 cut(s) 1470, 1474
BsiEI CGRYCG 3 cut(s) 309, 986, 1474
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 5 cut(s) 159, 244, 337, 559, 1300
BsiWI CGTACG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 565, 666
BsmAI GTCTC 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 3 cut(s) 637, 877, 1079
Bso31I GGTCTC 1 cut(s) 650
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 5 cut(s) 101, 475, 1141, 1310, 1471
Bsp1720I GCTNAGC 2 cut(s) 149, 932
Bsp19I CCATGG 1 cut(s) 1439
BspACI CCGC 6 cut(s) 113, 178, 184, 383, 565, 667
BspCNI CTCAG 6 cut(s) 162, 270, 282, 517, 933, 1048
BspDI ATCGAT 2 cut(s) 1470, 1474
BspFNI CGCG 2 cut(s) 565, 667
BspLI GGNNCC 2 cut(s) 163, 248
BspT107I GGYRCC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 650
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 614
BsrFI RCCGGY 2 cut(s) 158, 1299
BsrI ACTGG 1 cut(s) 718
BssAI RCCGGY 2 cut(s) 158, 1299
BssECI CCNNGG 5 cut(s) 141, 142, 684, 760, 1439
BssMI GATC 5 cut(s) 101, 475, 1141, 1310, 1471
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 1439
Bst2UI CCWGG 3 cut(s) 130, 143, 686
Bst4CI ACNGT 5 cut(s) 34, 251, 371, 761, 984
Bst6I CTCTTC 2 cut(s) 76, 1314
BstACI GRCGYC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 1114
BstC8I GCNNGC 4 cut(s) 6, 202, 239, 385
BstDEI CTNAG 7 cut(s) 149, 257, 290, 504, 920, 932, 1035
BstDSI CCRYGG 2 cut(s) 760, 1439
BstEII GGTNACC 1 cut(s) 755
BstF5I GGATG 2 cut(s) 958, 1435
BstFNI CGCG 2 cut(s) 565, 667
BstHHI GCGC 3 cut(s) 565, 577, 667
BstKTI GATC 5 cut(s) 104, 478, 1144, 1313, 1474
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 5 cut(s) 101, 475, 1141, 1310, 1471
BstMCI CGRYCG 3 cut(s) 309, 986, 1474
BstMWI GCNNNNNNNGC 6 cut(s) 159, 380, 431, 860, 1114, 1145
BstNI CCWGG 3 cut(s) 130, 143, 686
BstPI GGTNACC 1 cut(s) 755
BstSCI CCNGG 4 cut(s) 128, 141, 558, 684
BstSFI CTRYAG 1 cut(s) 1228
BstUI CGCG 2 cut(s) 565, 667
BstV1I GCAGC 2 cut(s) 667, 1120
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 1 cut(s) 1310
BstYI RGATCY 1 cut(s) 1310
Bsu15I ATCGAT 2 cut(s) 1470, 1474
BsuI GTATCC 1 cut(s) 1057
BsuTUI ATCGAT 2 cut(s) 1470, 1474
BtgI CCRYGG 2 cut(s) 760, 1439
BtsCI GGATG 2 cut(s) 958, 1435
BtsI GCAGTG 2 cut(s) 214, 429
BtsIMutI CAGTG 2 cut(s) 214, 429
Cac8I GCNNGC 4 cut(s) 6, 202, 239, 385
CaiI CAGNNNCTG 2 cut(s) 289, 1114
CfoI GCGC 3 cut(s) 565, 577, 667
Cfr10I RCCGGY 2 cut(s) 158, 1299
Cfr13I GGNCC 1 cut(s) 1297
ClaI ATCGAT 2 cut(s) 1470, 1474
CseI GACGC 1 cut(s) 376
CsiI ACCWGGT 1 cut(s) 128
Csp6I GTAC 2 cut(s) 19, 327
CviAII CATG 2 cut(s) 520, 1440
CviQI GTAC 2 cut(s) 19, 327
DdeI CTNAG 7 cut(s) 149, 257, 290, 504, 920, 932, 1035
DpnI GATC 5 cut(s) 103, 477, 1143, 1312, 1473
DpnII GATC 5 cut(s) 101, 475, 1141, 1310, 1471
DrdI GACNNNNNNGTC 1 cut(s) 994
DriI GACNNNNNGTC 1 cut(s) 36
DseDI GACNNNNNNGTC 1 cut(s) 994
Eam1104I CTCTTC 2 cut(s) 76, 1314
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 2 cut(s) 76, 1314
Eco130I CCWWGG 1 cut(s) 1439
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 650
Eco47I GGWCC 1 cut(s) 1297
Eco88I CYCGRG 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 755
EcoO65I GGTNACC 1 cut(s) 755
EcoRII CCWGG 3 cut(s) 128, 141, 684
EcoT14I CCWWGG 1 cut(s) 1439
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 1439
FaeI CATG 2 cut(s) 523, 1443
FaqI GGGAC 1 cut(s) 380
FatI CATG 2 cut(s) 519, 1439
FauI CCCGC 3 cut(s) 185, 376, 558
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 986
Fnu4HI GCNGC 2 cut(s) 681, 1109
FokI GGATG 2 cut(s) 965, 1442
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 681, 1109
FspBI CTAG 2 cut(s) 843, 1118
GlaI GCGC 3 cut(s) 564, 576, 666
GluI GCNGC 2 cut(s) 681, 1109
HapII CCGG 5 cut(s) 159, 244, 337, 559, 1300
HgaI GACGC 1 cut(s) 376
HhaI GCGC 3 cut(s) 565, 577, 667
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 2 cut(s) 523, 1443
Hin6I GCGC 3 cut(s) 563, 575, 665
HinP1I GCGC 3 cut(s) 563, 575, 665
HincII GTYRAC 2 cut(s) 987, 1128
HindII GTYRAC 2 cut(s) 987, 1128
HindIII AAGCTT 1 cut(s) 94
HpaII CCGG 5 cut(s) 159, 244, 337, 559, 1300
HphI GGTGA 4 cut(s) 66, 130, 614, 767
Hpy166II GTNNAC 2 cut(s) 987, 1128
Hpy188I TCNGA 8 cut(s) 119, 361, 367, 415, 475, 870, 1243, 1315
Hpy188III TCNNGA 5 cut(s) 506, 901, 1037, 1349, 1370
Hpy8I GTNNAC 2 cut(s) 987, 1128
Hpy99I CGWCG 3 cut(s) 325, 353, 356
HpyAV CCTTC 5 cut(s) 327, 498, 601, 1087, 1401
HpyCH4III ACNGT 5 cut(s) 34, 251, 371, 761, 984
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 380, 431, 860, 1114, 1145
HpyF3I CTNAG 7 cut(s) 149, 257, 290, 504, 920, 932, 1035
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 2 cut(s) 523, 1443
HspAI GCGC 3 cut(s) 563, 575, 665
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 5 cut(s) 101, 475, 1141, 1310, 1471
LmnI GCTCC 5 cut(s) 167, 246, 430, 829, 928
Lsp1109I GCAGC 2 cut(s) 667, 1120
LweI GCATC 4 cut(s) 652, 720, 855, 1260
MabI ACCWGGT 1 cut(s) 128
MaeI CTAG 2 cut(s) 843, 1118
MaeIII GTNAC 2 cut(s) 136, 755
MalI GATC 5 cut(s) 103, 477, 1143, 1312, 1473
MbiI CCGCTC 1 cut(s) 186
MboI GATC 5 cut(s) 101, 475, 1141, 1310, 1471
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 1 cut(s) 1310
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 7 cut(s) 265, 1022, 1102, 1196, 1340, 1364, 1445
MlyI GAGTC 5 cut(s) 23, 350, 1004, 1244, 1462
MmeI TCCRAC 2 cut(s) 189, 993
Mph1103I ATGCAT 1 cut(s) 877
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 3 cut(s) 464, 813, 1065
MslI CAYNNNNRTG 1 cut(s) 1332
MspA1I CMGCKG 1 cut(s) 808
MspI CCGG 5 cut(s) 159, 244, 337, 559, 1300
MspR9I CCNGG 4 cut(s) 130, 143, 560, 686
MunI CAATTG 1 cut(s) 265
Mva1269I GAATGC 3 cut(s) 637, 877, 1079
MvaI CCWGG 3 cut(s) 130, 143, 686
MvnI CGCG 2 cut(s) 565, 667
MwoI GCNNNNNNNGC 6 cut(s) 159, 380, 431, 860, 1114, 1145
NciI CCSGG 1 cut(s) 560
NcoI CCATGG 1 cut(s) 1439
NdeII GATC 5 cut(s) 101, 475, 1141, 1310, 1471
NlaIII CATG 2 cut(s) 523, 1443
NlaIV GGNNCC 2 cut(s) 163, 248
NmuCI GTSAC 2 cut(s) 136, 755
NsiI ATGCAT 1 cut(s) 877
PasI CCCWGGG 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PctI GAATGC 3 cut(s) 637, 877, 1079
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 8 cut(s) 362, 446, 595, 745, 1016, 1177, 1205, 1352
Pfl23II CGTACG 1 cut(s) 18
PkrI GCNGC 2 cut(s) 682, 1110
Ple19I CGATCG 1 cut(s) 1474
PleI GAGTC 5 cut(s) 22, 350, 1003, 1243, 1461
PpsI GAGTC 5 cut(s) 22, 350, 1003, 1243, 1461
Psp6I CCWGG 3 cut(s) 128, 141, 684
PspEI GGTNACC 1 cut(s) 755
PspGI CCWGG 3 cut(s) 128, 141, 684
PspLI CGTACG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 163, 248
PspPI GGNCC 1 cut(s) 1297
PstNI CAGNNNCTG 2 cut(s) 289, 1114
PsuI RGATCY 1 cut(s) 1310
PvuI CGATCG 1 cut(s) 1474
PvuII CAGCTG 1 cut(s) 808
RsaI GTAC 2 cut(s) 20, 328
RsaNI GTAC 2 cut(s) 19, 327
RseI CAYNNNNRTG 1 cut(s) 1332
SalI GTCGAC 1 cut(s) 985
SaqAI TTAA 3 cut(s) 464, 813, 1065
SatI GCNGC 2 cut(s) 681, 1109
Sau3AI GATC 5 cut(s) 101, 475, 1141, 1310, 1471
Sau96I GGNCC 1 cut(s) 1297
SchI GAGTC 5 cut(s) 23, 350, 1004, 1244, 1462
ScrFI CCNGG 4 cut(s) 130, 143, 560, 686
SduI GDGCHC 1 cut(s) 150
SexAI ACCWGGT 1 cut(s) 128
SfaNI GCATC 4 cut(s) 652, 720, 855, 1260
SfcI CTRYAG 1 cut(s) 1228
SinI GGWCC 1 cut(s) 1297
SmiMI CAYNNNNRTG 1 cut(s) 1332
SmlI CTYRAG 2 cut(s) 97, 899
SmoI CTYRAG 2 cut(s) 97, 899
Sse9I AATT 7 cut(s) 265, 1022, 1102, 1196, 1340, 1364, 1445
SsiI CCGC 6 cut(s) 113, 178, 184, 383, 565, 667
SspMI CTAG 2 cut(s) 843, 1118
StyD4I CCNGG 4 cut(s) 128, 141, 558, 684
StyI CCWWGG 1 cut(s) 1439
TaaI ACNGT 5 cut(s) 34, 251, 371, 761, 984
TaqI TCGA 8 cut(s) 309, 320, 449, 455, 986, 1019, 1470, 1474
TaqII GACCGA 2 cut(s) 295, 674
TasI AATT 7 cut(s) 265, 1022, 1102, 1196, 1340, 1364, 1445
TatI WGTACW 1 cut(s) 326
TfiI GAWTC 8 cut(s) 362, 446, 595, 745, 1016, 1177, 1205, 1352
Tru1I TTAA 3 cut(s) 464, 813, 1065
Tru9I TTAA 3 cut(s) 464, 813, 1065
TscAI CASTG 2 cut(s) 221, 436
TseFI GTSAC 2 cut(s) 136, 755
TseI GCWGC 2 cut(s) 680, 1108
Tsp45I GTSAC 2 cut(s) 136, 755
TspDTI ATGAA 6 cut(s) 644, 753, 813, 831, 969, 1434
TspGWI ACGGA 2 cut(s) 459, 965
TspRI CASTG 2 cut(s) 221, 436
VpaK11BI GGWCC 1 cut(s) 1297
XapI RAATTY 3 cut(s) 1102, 1364, 1445
XcmI CCANNNNNNNNNTGG 1 cut(s) 1446
XmiI GTMKAC 1 cut(s) 986
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 2 cut(s) 843, 1118
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.