Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005866

Physical Location & Seq

Genomic Coordinates Forward (+)

9009135 .. 9015443

Gene Structure 6309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG098600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3030 bp

ATGGCGGTGAGGCTAACCACCTGGTTTGTGAGCCAGGGGATTAGCATTTCCGGTTCAAACTCCAGGCGCTCACATTCAAATTCGCGCTTCTCATTTGCTTCCTCCTCTCCTGCTTCTTCTTCTTCTTCTTCTTCGTCCTGTAAGCTACGCCACCGGAATCTCAGTTGTACTTGCCTGCAGAAGAGGCAAAGAGCTAGGAAGAGATCCTCTCAGGAACAGTCTTCTGCGGATTTCCTGCCGAGTGGCGAAGAGGACTCTGAATCGGAGACTGCTTCGGTCGGCATGGTCCCTCTCTTGAGCTCAGAAAGCGTATCTGATGATGATGTTAATACTATCAATTCAAACGATTCGATTTTGAATGCTCTCACTACATCTGATCAAGCAGCACCTTCGGATTTGGTTGGAATGATAAGGAATGCGGAGAAAAATATTCTTCTCTTGAATCAAGCTCGGGTTAGTGCGCTTCAAGACATTGACAAGATTCTATCTGAAAAGGAAGAATTGCAAGGAGAAATGAATGCTTTGGAAATGAGATTGGCAGAGACTGATGCACGTATCAGAGTGGCTGCTCAAGAGAAAGTAAGGATGGAACTCCTCGGAGACCACTTAAACCAGATGCGGAATGAACAGAATTTCAATGGTGATGGTGCGGAAACAAGCAATGGGGTTGAGATTTTTGAGAGTGAAAGTGAGCTATTTAATGAAGAAGCTCCTTTGCCATACAAAAGTAGCATCAATTCGCTTGTAGCAAATCTTAGTTCATTGCGATTAGAAAATGTGTCACTTAGGAATGATATACAGGAACTCAGAGAGGAGCTTAGTAATATGAAAAATACGGATGAACGTGTGGTCATGCTTGAAAAACAACGTTCGTCTTTGGAGTCTGTCCTAAAAGATTTGGAGTCCAAATTGGTAGTTTCTCAGGAAGATGTTTCCAAACTTTCCAATCTGAAGGTTGAATGCAAGGGTTTATGGGAAAAGGTGGAGAACTTGCAAGTACTGCTAGATAAGTCGACCAAGCAGGCAGATCAAGCTATTATAGTGTTACAGCAAAATCAGGAGATTCGAAAAAAGGTTGATAAATTAGAAGAATCTCTTGAAAAAGCTAATGTGTATAAGGAGTCATCAGAAAAGATGCAACAGTATAATGAGCTTATGCAACAAAAGATACAACTAATGGAGGGACGGCTTCAGCGTTCGGATGAAGAGATACATTCTTATGTTCAGTTATATCAAGAATCTGTGGAGGAATTTCAAGATACCTTAAATACTCTAAAAGAAGAAAGCAAGAGAAGGGTGATGGATGAACCTGTTGATGACATGCCTTGGGAATTTTGGAGCCGTTTATTGCTTATAATAGATGGTTGGTTGTTGGAAAAGAAAATATCAATTGATGATGCAAAGGCGTTGAGAGAAATGGTATGGAAGAGAGATCGACGGATTCATGACTCATACATGGCATGCAAGGAAAAGAATGTAAATGAGGCTGTGACTACATTTCTCAGACTGATATCATCACAAACAATTTCAGGATTGCATGTCGTTCATATCGCAGCAGAGATGGCACCAGTTGCTAAGGTCGGTGGTTTGGGTGATGTTGTAGCTGGTCTTAGTAAAGCATTGCAGAAGAAGGGACACCTTGTGGAAATTATTCTTCCCAAATATGATTGCATGGAGTACGATCGTGTTCGTGACCTAAGGGCCCTAGATGTGGCAGTAGAGTCGTACTTCGATGGTCGACTATTCAAGAATAAAATCTGGGTTGGCACTGTTGAAGGTCTTCCTGTATATTTTATTGAGCCTCTTCATCCCGATAAGCTCTTCTGGAGAGGACAGTTCTATGGAGAACGTGATGATTTCAAACGTTTTTCCTTCTTCAGTCGTGCAGCCCTTGAGTTACTTCTTCAAGCTGGCAAGAAACCTGACATTATTCATTGTCATGATTGGCAGACAGCTTTCGTGGCTCCACTTTATTGGGACTTATATGCCCCAAAGGGTTTAAACTCGGCTAGGATATGTTTTACCTGCCACAACTTTGAATACCAAGGGACTGCACCTGCTTCAGACTTGGCTTCTTGTGGTCTTGATGTCGGCCAGCTAAACAGACCAGATAGAATGCAGGACAACTCAGCACATGATAGGATCAATCCGGTTAAGGGTGCAGTTGTATTCTCTAATATCGTGACAACGGTATCACCTACCTATGCGCAAGAGGTGCGGAGCGCTGAGGGTGGACGTGGTCTCCATTCAACACTTAATTTTCATTCTAAAAAGTTCGTTGGAATTCTCAATGGAATTGATGCTGATGCATGGAATCCTGCCACTGATGCATATCTCAAAGTACAGTACACTGCCAATGATCTTGGGGGGAAAGCAGAAAATAAGGAAGCTATTAGAAAGAGTCTAGGGCTTTCATATGCCGATGTCAGGAGACCATTGGTGGGATGCATAACGAGATTGGTGCCACAGAAAGGTGTACATCTCATCAGACATGCAATTTATAGAACATTGGAGCTAGGAGGGCAGTTTGTTCTTCTGGGTTCAAGTCCAGTACATCATATTCAGAAGGAATTTGAGGCAATTGCAAACCATTTTCAGAGCCATGATCATATTAGGTTGATATTGAAGTTTGATGAAACTCTTTCCCATTCCATTTATGCTGCTTCTGATATGTTCATCGTTCCATCAATCTTTGAGCCTTGTGGACTTACACAGATGATAGCAATGAGATATGGTTCTATACCCATTGCAAGAAAAACTGGTGGACTAAATGATAGTGTCTTTGATGTTGATGATGACACCGTACCTCTTCAGTTTCGAAATGGATATTCATTTTTGTCTCCTGATGAACAGGGGCTAAACGGTGCTTTGGAACGTGCATTTAACCACTACCTAAGTAAGCCTGAGAGTTGGCGGCAGCTTGTTCAGAAGGATATGAACATAGATTTCAGTTGGGATACTTCTGCTTCACAGTACGAAGAACTCTACTCTAAGTCCGTGGCCAGAGCAAGGGCGACAATTCGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019252 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 map00500 map01100 map01110 map02026

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

1009

Amino Acids

113.94

Weight (kDa)

5.67

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_5	PF08323	513 - 753	1.8e-66	Starch synthase catalytic domain
Glyco_transf_4	PF13439	527 - 741	1.2e-08	Glycosyltransferase Family 4
Glycos_transf_1	PF00534	810 - 971	1.1e-09	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	812 - 930	6.1e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18240
fragaria_vesca	FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130
malus_domestica	MD05G1289600.v1.1 MD10G1265500.v1.1
prunus_persica	Prupe.4G076100_v2.0.a1
pyrus_communis	pycom05g26670 pycom10g22140
rosa_chinensis	RchiOBHm_Chr5g0013241
rosa_laevigata	RLG00000032000
rosa_multiflora	Rmu_co8500739.1_g000001 Rmu_sc0004521.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063270
rosa_rugosa	Rorug05G0008200.1 Rorug05G0008300.1 Rorug05G0008400
rosa_samantha	Rh5AG103000 Rh5BG099800 Rh5CG111200 Rh5DG098600
rosa_wichuraiana	Rw5G008990

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1355
AarI	CACCTGC	1 cut(s)	2065
Acc16I	TGCGCA	1 cut(s)	2208
Acc36I	ACCTGC	2 cut(s)	2033, 2065
AccB1I	GGYRCC	2 cut(s)	1564, 2461
AccI	GTMKAC	2 cut(s)	1013, 1738
AccII	CGCG	1 cut(s)	85
AciI	CCGC	7 cut(s)	5, 227, 419, 619, 650, 2218, 2914
AclI	AACGTT	2 cut(s)	868, 1864
AclWI	GGATC	2 cut(s)	198, 2150
AcoI	YGGCCR	2 cut(s)	2092, 3000
AcsI	RAATTY	6 cut(s)	79, 631, 1250, 1331, 2283, 2570
AcuI	CTGAAG	5 cut(s)	971, 1175, 1861, 2046, 2795
AdeI	CACNNNGTG	1 cut(s)	1642
AfeI	AGCGCT	1 cut(s)	2224
AfiI	CCNNNNNNNGG	6 cut(s)	1711, 2156, 2427, 2441, 2471, 3009
AflIII	ACRYGT	1 cut(s)	844
AjiI	CACGTC	1 cut(s)	2237
AjnI	CCWGG	3 cut(s)	20, 33, 62
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	6 cut(s)	260, 536, 594, 2246, 2425, 2844
AlwI	GGATC	2 cut(s)	198, 2150
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	450
Aor51HI	AGCGCT	1 cut(s)	2224
AoxI	GGCC	3 cut(s)	1701, 2092, 3000
ApaI	GGGCCC	1 cut(s)	1705
ApeKI	GCWGC	6 cut(s)	383, 566, 1553, 1886, 2660, 2917
ApoI	RAATTY	6 cut(s)	79, 631, 1250, 1331, 2283, 2570
Asp700I	GAANNNNTTC	2 cut(s)	1650, 1779
AspLEI	GCGC	5 cut(s)	69, 87, 463, 2209, 2225
AspS9I	GGNCC	3 cut(s)	286, 1701, 1702
AsuHPI	GGTGA	5 cut(s)	19, 653, 1309, 1604, 2187
AsuII	TTCGAA	2 cut(s)	1066, 2818
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	286
AxyI	CCTNAGG	1 cut(s)	1697
BaeGI	GKGCMC	1 cut(s)	1705
BaeI	ACNNNNGTAYC	2 cut(s)	2175, 2208
BalI	TGGCCA	1 cut(s)	3002
BanI	GGYRCC	2 cut(s)	1564, 2461
BanII	GRGCYC	2 cut(s)	302, 1705
BbsI	GAAGAC	2 cut(s)	213, 1772
Bbv12I	GWGCWC	1 cut(s)	302
BbvCI	CCTCAGC	1 cut(s)	2226
BbvI	GCAGC	6 cut(s)	395, 553, 1565, 1898, 2647, 2929
BccI	CCATC	7 cut(s)	580, 638, 1294, 1355, 1555, 1727, 2692
BceAI	ACGGC	2 cut(s)	1202, 1326
BcgI	CGANNNNNNTGC	6 cut(s)	372, 406, 1704, 1738, 2443, 2477
BciT130I	CCWGG	3 cut(s)	22, 35, 64
BciVI	GTATCC	1 cut(s)	2950
BclI	TGATCA	2 cut(s)	376, 2605
BcoDI	GTCTC	6 cut(s)	260, 536, 594, 2246, 2425, 2844
BfaI	CTAG	6 cut(s)	195, 1004, 1706, 2010, 2405, 2516
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	2 cut(s)	70, 2226
BfuAI	ACCTGC	2 cut(s)	2033, 2065
BfuI	GTATCC	1 cut(s)	2950
BisI	GCNGC	7 cut(s)	384, 567, 1554, 1887, 2661, 2915, 2918
BlsI	GCNGC	7 cut(s)	385, 568, 1555, 1888, 2662, 2916, 2919
BmcAI	AGTACT	1 cut(s)	999
Bme1390I	CCNGG	3 cut(s)	22, 35, 64
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	450
BmgBI	CACGTC	1 cut(s)	2237
BmgT120I	GGNCC	3 cut(s)	286, 1701, 1702
BmiI	GGNNCC	6 cut(s)	288, 1340, 1566, 1703, 1965, 2463
BmrFI	CCNGG	3 cut(s)	22, 35, 64
BmsI	GCATC	9 cut(s)	538, 606, 741, 1125, 1387, 2290, 2296, 2317, 2435
BpiI	GAAGAC	2 cut(s)	213, 1772
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	2 cut(s)	46, 1846
Bpu10I	CCTNAGC	2 cut(s)	1575, 2226
Bpu14I	TTCGAA	2 cut(s)	1066, 2818
BpuEI	CTTGAG	3 cut(s)	316, 555, 1913
BsaAI	YACGTR	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	2331
BsaI	GGTCTC	3 cut(s)	594, 2246, 2425
BsaJI	CCNNGG	5 cut(s)	34, 595, 1325, 2044, 2997
BsaWI	WCCGGW	3 cut(s)	50, 153, 2149
BsaXI	ACNNNNNCTCC	2 cut(s)	2226, 2256
Bsc4I	CCNNNNNNNGG	6 cut(s)	1711, 2156, 2427, 2441, 2471, 3009
Bse1I	ACTGG	3 cut(s)	1568, 2549, 2764
Bse21I	CCTNAGG	1 cut(s)	1697
Bse3DI	GCAATG	5 cut(s)	667, 761, 1619, 2730, 2745
Bse8I	GATNNNNATC	1 cut(s)	2331
BseBI	CCWGG	3 cut(s)	22, 35, 64
BseDI	CCNNGG	5 cut(s)	34, 595, 1325, 2044, 2997
BseGI	GGATG	6 cut(s)	591, 844, 1207, 1309, 1807, 2450
BseJI	GATNNNNATC	1 cut(s)	2331
BseLI	CCNNNNNNNGG	6 cut(s)	1711, 2156, 2427, 2441, 2471, 3009
BseMI	GCAATG	5 cut(s)	667, 761, 1619, 2730, 2745
BseMII	CTCAG	9 cut(s)	175, 224, 315, 820, 935, 1516, 2142, 2217, 2895
BseNI	ACTGG	3 cut(s)	1568, 2549, 2764
BseRI	GAGGAG	3 cut(s)	94, 584, 827
BseSI	GKGCMC	1 cut(s)	1705
BseXI	GCAGC	6 cut(s)	395, 553, 1565, 1898, 2647, 2929
BsgI	GTGCAG	3 cut(s)	1905, 2037, 2181
Bsh1236I	CGCG	1 cut(s)	85
Bsh1285I	CGRYCG	2 cut(s)	279, 1684
BshFI	GGCC	3 cut(s)	1703, 2094, 3002
BshNI	GGYRCC	2 cut(s)	1564, 2461
BsiEI	CGRYCG	2 cut(s)	279, 1684
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	51, 154, 2150
BslFI	GGGAC	5 cut(s)	272, 1197, 1647, 1991, 2062
BslI	CCNNNNNNNGG	6 cut(s)	1711, 2156, 2427, 2441, 2471, 3009
BsmAI	GTCTC	6 cut(s)	260, 536, 594, 2246, 2425, 2844
BsmFI	GGGAC	5 cut(s)	272, 1197, 1647, 1991, 2062
BsmI	GAATGC	5 cut(s)	364, 421, 523, 965, 2121
BsnI	GGCC	3 cut(s)	1703, 2094, 3002
Bso31I	GGTCTC	3 cut(s)	594, 2246, 2425
BsoBI	CYCGRG	1 cut(s)	450
Bsp119I	TTCGAA	2 cut(s)	1066, 2818
Bsp120I	GGGCCC	1 cut(s)	1701
Bsp1286I	GDGCHC	2 cut(s)	302, 1705
Bsp1407I	TGTACA	1 cut(s)	2476
Bsp143I	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
BspACI	CCGC	7 cut(s)	5, 227, 419, 619, 650, 2218, 2914
BspANI	GGCC	3 cut(s)	1703, 2094, 3002
BspCNI	CTCAG	9 cut(s)	174, 223, 314, 819, 934, 1515, 2141, 2218, 2896
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	2 cut(s)	1444, 1939
BspLI	GGNNCC	6 cut(s)	288, 1340, 1566, 1703, 1965, 2463
BspMAI	CTGCAG	1 cut(s)	180
BspMI	ACCTGC	2 cut(s)	2033, 2065
BspPI	GGATC	2 cut(s)	198, 2150
BspQI	GCTCTTC	1 cut(s)	1826
BspT104I	TTCGAA	2 cut(s)	1066, 2818
BspT107I	GGYRCC	2 cut(s)	1564, 2461
BspTNI	GGTCTC	3 cut(s)	594, 2246, 2425
BsrDI	GCAATG	5 cut(s)	667, 761, 1619, 2730, 2745
BsrGI	TGTACA	1 cut(s)	2476
BsrI	ACTGG	3 cut(s)	1568, 2549, 2764
BssECI	CCNNGG	5 cut(s)	34, 595, 1325, 2044, 2997
BssMI	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
BssT1I	CCWWGG	2 cut(s)	1325, 2044
Bst2UI	CCWGG	3 cut(s)	22, 35, 64
Bst4CI	ACNGT	9 cut(s)	219, 1143, 1771, 1836, 2191, 2346, 2803, 2864, 2973
Bst6I	CTCTTC	8 cut(s)	176, 194, 243, 1200, 1421, 1809, 1826, 2814
BstAPI	GCANNNNNTGC	3 cut(s)	1000, 1571, 2215
BstAUI	TGTACA	1 cut(s)	2476
BstBAI	YACGTR	1 cut(s)	554
BstBI	TTCGAA	2 cut(s)	1066, 2818
BstC8I	GCNNGC	5 cut(s)	176, 1023, 1462, 1912, 2096
BstDSI	CCRYGG	1 cut(s)	2997
BstF5I	GGATG	6 cut(s)	591, 844, 1207, 1309, 1807, 2450
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	2 cut(s)	70, 2226
BstHHI	GCGC	5 cut(s)	69, 87, 463, 2209, 2225
BstKTI	GATC	8 cut(s)	206, 379, 1030, 1435, 1684, 2145, 2362, 2608
BstMAI	GTCTC	6 cut(s)	260, 536, 594, 2246, 2425, 2844
BstMBI	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
BstMCI	CGRYCG	2 cut(s)	279, 1684
BstNI	CCWGG	3 cut(s)	22, 35, 64
BstNSI	RCATGY	4 cut(s)	1324, 1464, 1541, 2495
BstSCI	CCNGG	3 cut(s)	20, 33, 62
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	1705
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	6 cut(s)	395, 553, 1565, 1898, 2647, 2929
BstV2I	GAAGAC	2 cut(s)	213, 1772
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	1974
BstYI	RGATCY	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	1697
BsuI	GTATCC	1 cut(s)	2950
BsuRI	GGCC	3 cut(s)	1703, 2094, 3002
BtgI	CCRYGG	1 cut(s)	2997
BtrI	CACGTC	1 cut(s)	2237
BtsCI	GGATG	6 cut(s)	591, 844, 1207, 1309, 1807, 2450
BtsI	GCAGTG	1 cut(s)	2349
BtsIMutI	CAGTG	3 cut(s)	1767, 2322, 2349
BveI	ACCTGC	2 cut(s)	2033, 2065
Cac8I	GCNNGC	5 cut(s)	176, 1023, 1462, 1912, 2096
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	2 cut(s)	1444, 1939
CfoI	GCGC	5 cut(s)	69, 87, 463, 2209, 2225
Cfr13I	GGNCC	3 cut(s)	286, 1701, 1702
CsiI	ACCWGGT	1 cut(s)	20
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
DpnI	GATC	8 cut(s)	205, 378, 1029, 1434, 1683, 2144, 2361, 2607
DpnII	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
DraI	TTTAAA	1 cut(s)	2001
DraIII	CACNNNGTG	1 cut(s)	1642
EaeI	YGGCCR	2 cut(s)	2092, 3000
Eam1104I	CTCTTC	8 cut(s)	176, 194, 243, 1200, 1421, 1809, 1826, 2814
EarI	CTCTTC	8 cut(s)	176, 194, 243, 1200, 1421, 1809, 1826, 2814
Ecl136II	GAGCTC	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	1325, 2044
Eco24I	GRGCYC	2 cut(s)	302, 1705
Eco31I	GGTCTC	3 cut(s)	594, 2246, 2425
Eco32I	GATATC	1 cut(s)	1512
Eco47I	GGWCC	1 cut(s)	286
Eco47III	AGCGCT	1 cut(s)	2224
Eco53kI	GAGCTC	1 cut(s)	300
Eco57I	CTGAAG	5 cut(s)	971, 1175, 1861, 2046, 2795
Eco81I	CCTNAGG	1 cut(s)	1697
Eco88I	CYCGRG	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	300
EcoO109I	RGGNCCY	2 cut(s)	1701, 1702
EcoRI	GAATTC	1 cut(s)	2283
EcoRII	CCWGG	3 cut(s)	20, 33, 62
EcoRV	GATATC	1 cut(s)	1512
EcoT14I	CCWWGG	2 cut(s)	1325, 2044
EcoT22I	ATGCAT	3 cut(s)	2311, 2332, 2450
EcoT38I	GRGCYC	2 cut(s)	302, 1705
ErhI	CCWWGG	2 cut(s)	1325, 2044
FalI	AAGNNNNNCTT	2 cut(s)	1080, 1112
FaqI	GGGAC	5 cut(s)	272, 1197, 1647, 1991, 2062
FauNDI	CATATG	1 cut(s)	2416
FbaI	TGATCA	2 cut(s)	376, 2605
FblI	GTMKAC	2 cut(s)	1013, 1738
Fnu4HI	GCNGC	7 cut(s)	384, 567, 1554, 1887, 2661, 2915, 2918
FokI	GGATG	6 cut(s)	598, 851, 1214, 1316, 1794, 2457
FriOI	GRGCYC	2 cut(s)	302, 1705
Fsp4HI	GCNGC	7 cut(s)	384, 567, 1554, 1887, 2661, 2915, 2918
FspBI	CTAG	6 cut(s)	195, 1004, 1706, 2010, 2405, 2516
FspI	TGCGCA	1 cut(s)	2208
GlaI	GCGC	5 cut(s)	68, 86, 462, 2208, 2224
GluI	GCNGC	7 cut(s)	384, 567, 1554, 1887, 2661, 2915, 2918
GsuI	CTGGAG	2 cut(s)	46, 1846
HaeII	RGCGCY	2 cut(s)	70, 2226
HaeIII	GGCC	3 cut(s)	1703, 2094, 3002
HapII	CCGG	3 cut(s)	51, 154, 2150
HhaI	GCGC	5 cut(s)	69, 87, 463, 2209, 2225
Hin6I	GCGC	5 cut(s)	67, 85, 461, 2207, 2223
HinP1I	GCGC	5 cut(s)	67, 85, 461, 2207, 2223
HincII	GTYRAC	2 cut(s)	1014, 1739
HindII	GTYRAC	2 cut(s)	1014, 1739
HpaII	CCGG	3 cut(s)	51, 154, 2150
HphI	GGTGA	5 cut(s)	19, 653, 1309, 1604, 2187
Hpy166II	GTNNAC	7 cut(s)	1014, 1739, 2234, 2349, 2477, 2705, 2765
Hpy8I	GTNNAC	7 cut(s)	1014, 1739, 2234, 2349, 2477, 2705, 2765
Hpy99I	CGWCG	1 cut(s)	1440
HpyAV	CCTTC	8 cut(s)	399, 946, 1287, 1624, 1769, 1882, 2560, 2923
HpyCH4III	ACNGT	9 cut(s)	219, 1143, 1771, 1836, 2191, 2346, 2803, 2864, 2973
HpyCH4IV	ACGT	7 cut(s)	553, 844, 868, 1849, 1864, 2236, 2875
HpySE526I	ACGT	7 cut(s)	553, 844, 868, 1849, 1864, 2236, 2875
HspAI	GCGC	5 cut(s)	67, 85, 461, 2207, 2223
Ksp22I	TGATCA	2 cut(s)	376, 2605
Kzo9I	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
LguI	GCTCTTC	1 cut(s)	1826
LmnI	GCTCC	6 cut(s)	715, 814, 1338, 1969, 2220, 2512
Lsp1109I	GCAGC	6 cut(s)	395, 553, 1565, 1898, 2647, 2929
LweI	GCATC	9 cut(s)	538, 606, 741, 1125, 1387, 2290, 2296, 2317, 2435
MabI	ACCWGGT	1 cut(s)	20
MaeI	CTAG	6 cut(s)	195, 1004, 1706, 2010, 2405, 2516
MaeII	ACGT	7 cut(s)	553, 844, 868, 1849, 1864, 2236, 2875
MaeIII	GTNAC	6 cut(s)	780, 1044, 1489, 1691, 1896, 2182
MalI	GATC	8 cut(s)	205, 378, 1029, 1434, 1683, 2144, 2361, 2607
MboI	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
MfeI	CAATTG	2 cut(s)	1389, 2580
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	302, 1705
MlsI	TGGCCA	1 cut(s)	3002
MluNI	TGGCCA	1 cut(s)	3002
MlyI	GAGTC	7 cut(s)	248, 890, 911, 1130, 1442, 1730, 2410
MmeI	TCCRAC	3 cut(s)	382, 1353, 2260
Mox20I	TGGCCA	1 cut(s)	3002
Mph1103I	ATGCAT	3 cut(s)	2311, 2332, 2450
MroXI	GAANNNNTTC	2 cut(s)	1650, 1779
MscI	TGGCCA	1 cut(s)	3002
MseI	TTAA	9 cut(s)	327, 608, 699, 1265, 2000, 2154, 2256, 2883, 3028
MslI	CAYNNNNRTG	2 cut(s)	1218, 1938
Msp20I	TGGCCA	1 cut(s)	3002
MspI	CCGG	3 cut(s)	51, 154, 2150
MspR9I	CCNGG	3 cut(s)	22, 35, 64
MssI	GTTTAAAC	1 cut(s)	2001
MunI	CAATTG	2 cut(s)	1389, 2580
Mva1269I	GAATGC	5 cut(s)	364, 421, 523, 965, 2121
MvaI	CCWGG	3 cut(s)	22, 35, 64
MvnI	CGCG	1 cut(s)	85
NdeI	CATATG	1 cut(s)	2416
NdeII	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
NlaIV	GGNNCC	6 cut(s)	288, 1340, 1566, 1703, 1965, 2463
NmeAIII	GCCGAG	2 cut(s)	264, 1985
NmuCI	GTSAC	4 cut(s)	780, 1489, 1691, 2182
NsbI	TGCGCA	1 cut(s)	2208
NsiI	ATGCAT	3 cut(s)	2311, 2332, 2450
NspI	RCATGY	4 cut(s)	1324, 1464, 1541, 2495
NspV	TTCGAA	2 cut(s)	1066, 2818
PaeI	GCATGC	1 cut(s)	1464
PagI	TCATGA	2 cut(s)	1444, 1939
PaqCI	CACCTGC	1 cut(s)	2065
PciSI	GCTCTTC	1 cut(s)	1826
PcsI	WCGNNNNNNNCGW	1 cut(s)	1192
PctI	GAATGC	5 cut(s)	364, 421, 523, 965, 2121
PdmI	GAANNNNTTC	2 cut(s)	1650, 1779
PflFI	GACNNNGTC	1 cut(s)	2238
PkrI	GCNGC	7 cut(s)	385, 568, 1555, 1888, 2662, 2916, 2919
Ple19I	CGATCG	1 cut(s)	1684
PleI	GAGTC	7 cut(s)	248, 889, 910, 1129, 1442, 1729, 2409
PmeI	GTTTAAAC	1 cut(s)	2001
PpsI	GAGTC	7 cut(s)	248, 889, 910, 1129, 1442, 1729, 2409
Ppu21I	YACGTR	1 cut(s)	554
PsiI	TTATAA	1 cut(s)	1355
Psp124BI	GAGCTC	1 cut(s)	302
Psp1406I	AACGTT	2 cut(s)	868, 1864
Psp6I	CCWGG	3 cut(s)	20, 33, 62
PspGI	CCWGG	3 cut(s)	20, 33, 62
PspN4I	GGNNCC	6 cut(s)	288, 1340, 1566, 1703, 1965, 2463
PspOMI	GGGCCC	1 cut(s)	1701
PspPI	GGNCC	3 cut(s)	286, 1701, 1702
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	2238
PvuI	CGATCG	1 cut(s)	1684
RseI	CAYNNNNRTG	2 cut(s)	1218, 1938
SacI	GAGCTC	1 cut(s)	302
SalI	GTCGAC	2 cut(s)	1012, 1737
SapI	GCTCTTC	1 cut(s)	1826
SaqAI	TTAA	9 cut(s)	327, 608, 699, 1265, 2000, 2154, 2256, 2883, 3028
SatI	GCNGC	7 cut(s)	384, 567, 1554, 1887, 2661, 2915, 2918
Sau3AI	GATC	8 cut(s)	203, 376, 1027, 1432, 1681, 2142, 2359, 2605
Sau96I	GGNCC	3 cut(s)	286, 1701, 1702
ScaI	AGTACT	1 cut(s)	999
SchI	GAGTC	7 cut(s)	248, 890, 911, 1130, 1442, 1730, 2410
ScrFI	CCNGG	3 cut(s)	22, 35, 64
SduI	GDGCHC	2 cut(s)	302, 1705
SexAI	ACCWGGT	1 cut(s)	20
SfaNI	GCATC	9 cut(s)	538, 606, 741, 1125, 1387, 2290, 2296, 2317, 2435
SfcI	CTRYAG	1 cut(s)	176
SfuI	TTCGAA	2 cut(s)	1066, 2818
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	1218, 1938
SmlI	CTYRAG	3 cut(s)	295, 570, 1892
SmoI	CTYRAG	3 cut(s)	295, 570, 1892
SphI	GCATGC	1 cut(s)	1464
SsiI	CCGC	7 cut(s)	5, 227, 419, 619, 650, 2218, 2914
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	6 cut(s)	195, 1004, 1706, 2010, 2405, 2516
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	3 cut(s)	20, 33, 62
StyI	CCWWGG	2 cut(s)	1325, 2044
TaaI	ACNGT	9 cut(s)	219, 1143, 1771, 1836, 2191, 2346, 2803, 2864, 2973
TaiI	ACGT	7 cut(s)	556, 847, 871, 1852, 1867, 2239, 2878
TaqI	TCGA	7 cut(s)	350, 1013, 1066, 1435, 1731, 1738, 2818
TaqII	GACCGA	1 cut(s)	265
TatI	WGTACW	6 cut(s)	167, 997, 2341, 2346, 2476, 2551
TauI	GCSGC	1 cut(s)	2917
Tru1I	TTAA	9 cut(s)	327, 608, 699, 1265, 2000, 2154, 2256, 2883, 3028
Tru9I	TTAA	9 cut(s)	327, 608, 699, 1265, 2000, 2154, 2256, 2883, 3028
TscAI	CASTG	3 cut(s)	1774, 2329, 2356
TseFI	GTSAC	4 cut(s)	780, 1489, 1691, 2182
TseI	GCWGC	6 cut(s)	383, 566, 1553, 1886, 2660, 2917
Tsp45I	GTSAC	4 cut(s)	780, 1489, 1691, 2182
TspGWI	ACGGA	3 cut(s)	851, 1453, 2986
TspRI	CASTG	3 cut(s)	1774, 2329, 2356
Tth111I	GACNNNGTC	1 cut(s)	2238
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	6 cut(s)	79, 631, 1250, 1331, 2283, 2570
XceI	RCATGY	4 cut(s)	1324, 1464, 1541, 2495
XmiI	GTMKAC	2 cut(s)	1013, 1738
XmnI	GAANNNNTTC	2 cut(s)	1650, 1779
XspI	CTAG	6 cut(s)	195, 1004, 1706, 2010, 2405, 2516
ZrmI	AGTACT	1 cut(s)	999
Zsp2I	ATGCAT	3 cut(s)	2311, 2332, 2450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.