Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005866

Physical Location & Seq

Genomic Coordinates Reverse (-)

481278 .. 482463

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAAAATTCCTGGTGGGATTCTAATGATGTTGCTATACAGCACATAGAGGTAGAGATATTTTTCCAATCTAAAGTTAATGTTGCAGTAATAAAATCAAACAAGGATACAAGATATGGATTGGATTCGATTGTAACGCATGATGGGGTTAAATTGCCTTGCTGGGCATTACCAAATCTATCATCGTTCAAACAAAAGTTTGGTCTTGATGCATATGAGCAGCTAGATGTGATCGGTATTGATGAAGCTCAGTTCTTTGAAGATCTTTATGATTTCTGCCGTGAAACTGCTGATCATGATGGCAAAAAAGTAATAGTTGCTGGACTAGATGGGGACTATTTGAGGAGGAGCTTTGGATCTGTGCTTGATATAATTCCCCTTGCTGATTCTGTAACCAAGTTAACTTCTCGATGCGAACTTTGTGGGAAACCGGCTTTCTTTACATTACGAAAGACGGAGGAGATGCAGACGGAAGTGATTGGCGGCGCTGATGTGTACATGCCTGTATGTCGAAAGCACTATGTTAGTGGACAAGTAGCCATTCAAGCAGCACGAGTTGTCCTGGAATCTCAAGTTGAGTGTAGGTCTTGTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019252 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 map00500 map01100 map01110 map02026

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

198

Amino Acids

22.22

Weight (kDa)

5.0

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	19 - 174	3.2e-44	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18240
fragaria_vesca	FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130
malus_domestica	MD05G1289600.v1.1 MD10G1265500.v1.1
prunus_persica	Prupe.4G076100_v2.0.a1
pyrus_communis	pycom05g26670 pycom10g22140
rosa_chinensis	RchiOBHm_Chr5g0013241
rosa_laevigata	RLG00000032000
rosa_multiflora	Rmu_co8500739.1_g000001 Rmu_sc0004521.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063270
rosa_rugosa	Rorug05G0008200.1 Rorug05G0008300.1 Rorug05G0008400
rosa_samantha	Rh5AG103000 Rh5BG099800 Rh5CG111200 Rh5DG098600
rosa_wichuraiana	Rw5G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	190, 260, 545
AjnI	CCWGG	2 cut(s)	11, 561
AluBI	AGCT	3 cut(s)	223, 248, 351
AluI	AGCT	3 cut(s)	223, 248, 351
AlwI	GGATC	1 cut(s)	364
ApeKI	GCWGC	2 cut(s)	220, 548
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AspLEI	GCGC	1 cut(s)	488
BauI	CACGAG	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	232, 560
BccI	CCATC	3 cut(s)	137, 293, 323
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	2 cut(s)	13, 563
BciVI	GTATCC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	2 cut(s)	224, 326
BfoI	RGCGCY	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	100
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	3 cut(s)	221, 484, 549
BlsI	GCNGC	3 cut(s)	222, 485, 550
Bme1390I	CCNGG	2 cut(s)	13, 563
BmrFI	CCNGG	2 cut(s)	13, 563
BmsI	GCATC	3 cut(s)	199, 401, 453
BpuEI	CTTGAG	1 cut(s)	555
Bse118I	RCCGGY	1 cut(s)	430
BseBI	CCWGG	2 cut(s)	13, 563
BseMII	CTCAG	1 cut(s)	263
BseRI	GAGGAG	3 cut(s)	358, 361, 473
BseXI	GCAGC	2 cut(s)	232, 560
BseYI	CCCAGC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	231, 262, 292, 356
BspACI	CCGC	1 cut(s)	483
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	430
BssMI	GATC	4 cut(s)	231, 262, 292, 356
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	13, 563
BstAUI	TGTACA	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	4 cut(s)	234, 265, 295, 359
BstMBI	GATC	4 cut(s)	231, 262, 292, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	2 cut(s)	13, 563
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	11, 561
BstV1I	GCAGC	2 cut(s)	232, 560
BstX2I	RGATCY	2 cut(s)	262, 356
BstYI	RGATCY	2 cut(s)	262, 356
BsuI	GTATCC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	3 cut(s)	140, 296, 499
CviJI	RGCY	5 cut(s)	223, 248, 351, 434, 539
CviKI_1	RGCY	5 cut(s)	223, 248, 351, 434, 539
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	4 cut(s)	233, 264, 294, 358
DpnII	GATC	4 cut(s)	231, 262, 292, 356
EcoRII	CCWGG	2 cut(s)	11, 561
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	3 cut(s)	143, 299, 502
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	3 cut(s)	139, 295, 498
FauNDI	CATATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	221, 484, 549
Fsp4HI	GCNGC	3 cut(s)	221, 484, 549
FspBI	CTAG	2 cut(s)	224, 326
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	3 cut(s)	221, 484, 549
GsaI	CCCAGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	489
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	3 cut(s)	143, 299, 502
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	20, 125, 386, 566
HpaI	GTTAAC	1 cut(s)	402
HpaII	CCGG	1 cut(s)	431
Hpy166II	GTNNAC	3 cut(s)	402, 496, 530
Hpy188III	TCNNGA	3 cut(s)	206, 296, 408
Hpy8I	GTNNAC	3 cut(s)	402, 496, 530
HpyCH4V	TGCA	4 cut(s)	4, 86, 212, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	143, 299, 502
HspAI	GCGC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	231, 262, 292, 356
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	7 cut(s)	25, 148, 306, 444, 516, 548, 575
Lsp1109I	GCAGC	2 cut(s)	232, 560
LweI	GCATC	3 cut(s)	199, 401, 453
MaeI	CTAG	2 cut(s)	224, 326
MaeIII	GTNAC	2 cut(s)	133, 391
MalI	GATC	4 cut(s)	233, 264, 294, 358
MboI	GATC	4 cut(s)	231, 262, 292, 356
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	2 cut(s)	262, 356
MluCI	AATT	3 cut(s)	7, 152, 372
MnlI	CCTC	4 cut(s)	43, 336, 339, 451
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	3 cut(s)	78, 150, 401
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	13, 563
MvaI	CCWGG	2 cut(s)	13, 563
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	4 cut(s)	231, 262, 292, 356
NlaIII	CATG	3 cut(s)	143, 299, 502
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	1 cut(s)	502
PagI	TCATGA	1 cut(s)	295
PfeI	GAWTC	4 cut(s)	20, 125, 386, 566
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	3 cut(s)	222, 485, 550
Psp6I	CCWGG	2 cut(s)	11, 561
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	2 cut(s)	11, 561
PsuI	RGATCY	2 cut(s)	262, 356
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	78, 150, 401
SatI	GCNGC	3 cut(s)	221, 484, 549
Sau3AI	GATC	4 cut(s)	231, 262, 292, 356
ScrFI	CCNGG	2 cut(s)	13, 563
SetI	ASST	5 cut(s)	54, 225, 250, 353, 587
SfaNI	GCATC	3 cut(s)	199, 401, 453
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	7, 152, 372
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	2 cut(s)	224, 326
StyD4I	CCNGG	2 cut(s)	11, 561
TaqI	TCGA	3 cut(s)	128, 409, 511
TasI	AATT	3 cut(s)	7, 152, 372
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	4 cut(s)	20, 125, 386, 566
Tru1I	TTAA	3 cut(s)	78, 150, 401
Tru9I	TTAA	3 cut(s)	78, 150, 401
TseI	GCWGC	2 cut(s)	220, 548
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	2 cut(s)	470, 485
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	502
XspI	CTAG	2 cut(s)	224, 326
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.