Rmu_co8500739.1_g000001

starch synthase 4, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8500739.1
Physical Location & Seq
Forward (+)
1 .. 2922
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8500739.1_g000001.1.cds

Sequence Viewer

Length: 1831 bp
ttgtacttgcctgcagaagaggcaaagagctaggaagagatcctctcaggaacagtcttcggcggatttcctgccaagtggcgaagaggactctgaatcggagactgcttcggtcggcatggtccctctcttgagctcagaaagcgtatctgatgatgatgttaatactatcaattcaaacgattcgattttgaatgctctcactacatctgatcaagcagcaccttcggatttggttggaatgataaggaatgcggagaaaaatattcttctcttgaatcaagctcgggttagtgcgcttcaagacattgacaagattctatctgaaaaggaagaattgcaaggagaaatgaatgctttggaaatgagattggcagagactgatgcacgtatcagagtggctgctcaagagaaagtaaggatggaactcctcggagaccacttaaaccagatgcggaatgaacagaatttcaatggtgatggtgcggaaacaagcaatggggttgagatttttgagagtgaaagtgagctatttaatgaagaagctcctttgccatacaaaagtagcatcaattcgcttgtagcaaatcttagtgcattgcgattagaaaatgtgtcacttaggaatgatatacaggaactcagagaggagcttagtaatatgaaaaatacggatgaacgtgtggtcatgcttgaacaacaacgttcgtctttggagtctgtcctaaaagatttggagtccaaattggtagtttctcaggaagatgtttccaaactttccaatctgaaggttgaatgcaaaggtttatgggaaaaggtggagaacttgcaagtactgctagataagtcgaccaagcaggcagatcaagctattatagtgttacagcaaaatcaggagattcgaaaaaaggttgataaattagaagaatctcttgaaaaagctaatgtgtataaggagtcatcagaaaagatgcaacagtataatgagcttatgcaacaaaagatacaactaatggaggaccggcttcagcgttcggatgaagagatacattcttatgttcagttatatcaagaatctgtggaggaatttcaagataccttaaatactctaaaagaagaaagcaagagaagggtgatggatgaacctgttgatgacatgccttgggaattttggagccgtttattgcttataatagatggttggttgttggaaaagaaaatatcaattgatgatgcaaaggcgttgagagaaatggtatggaagagagatcgacggattcatgactcatacatggcatgcaaggaaaagaatgtaaatgaggctgtgactacatttctcagactgatatcatcacaaacaatttcaggattgcatgtcgttcatatcgcagcagagatggcaccagttgctaaggcaactggtcttagtaaagcattgcagaagaagggacaccttgtggaaattattcttcccaaatatgattgcatggagtacgatcgtgttcgtgacctaagggccctagatgtggcagtagagtcgtacttcgatggtcgactattcaagaataaaatctgggttggcactgttgaaggtcttcctgtatattttattgagcctcttcatcccgataagctcttctggagaggacagttctatggagaacgtgatgatttcaaacgtttttccttcttcagtcgtgcagcccttgagttacttcttcaagctggcaagaaacctgacattattcattgtcatgattggcagacagctttcgtggtatggacctttaacctcaatttttttttcttttacaatttctataaactctga

Protein Analysis

609

Amino Acids

70.3

Weight (kDa)

4.98

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1191
AccB1I GGYRCC 1 cut(s) 1400
AccI GTMKAC 2 cut(s) 849, 1553
AciI CCGC 4 cut(s) 63, 255, 455, 486
AclI AACGTT 2 cut(s) 704, 1679
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 3 cut(s) 467, 1086, 1167
AcuI CTGAAG 3 cut(s) 807, 1011, 1676
AdeI CACNNNGTG 1 cut(s) 1457
AfaI GTAC 4 cut(s) 5, 835, 1494, 1542
AfiI CCNNNNNNNGG 1 cut(s) 1526
AflIII ACRYGT 1 cut(s) 680
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 3 cut(s) 96, 372, 430
AlwI GGATC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 1 cut(s) 1516
ApaI GGGCCC 1 cut(s) 1520
ApeKI GCWGC 4 cut(s) 219, 402, 1389, 1701
ApoI RAATTY 3 cut(s) 467, 1086, 1167
Asp700I GAANNNNTTC 2 cut(s) 1465, 1594
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 5 cut(s) 122, 1019, 1516, 1517, 1783
AsuHPI GGTGA 2 cut(s) 489, 1145
AsuII TTCGAA 1 cut(s) 902
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 3 cut(s) 122, 1019, 1783
AxyI CCTNAGG 1 cut(s) 1512
BaeGI GKGCMC 1 cut(s) 1520
BanI GGYRCC 1 cut(s) 1400
BanII GRGCYC 2 cut(s) 138, 1520
BbsI GAAGAC 2 cut(s) 49, 1587
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 4 cut(s) 231, 389, 1401, 1713
BccI CCATC 6 cut(s) 416, 474, 1130, 1191, 1391, 1542
BceAI ACGGC 1 cut(s) 1162
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 1519, 1553
BclI TGATCA 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 96, 372, 430
BfaI CTAG 3 cut(s) 31, 840, 1521
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 4 cut(s) 220, 403, 1390, 1702
BlsI GCNGC 4 cut(s) 221, 404, 1391, 1703
BmcAI AGTACT 1 cut(s) 835
Bme18I GGWCC 3 cut(s) 122, 1019, 1783
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 5 cut(s) 122, 1019, 1516, 1517, 1783
BmiI GGNNCC 4 cut(s) 124, 1176, 1402, 1518
BmsI GCATC 5 cut(s) 374, 442, 577, 961, 1223
BpiI GAAGAC 2 cut(s) 49, 1587
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 1661
Bpu10I CCTNAGC 1 cut(s) 1411
Bpu14I TTCGAA 1 cut(s) 902
BpuEI CTTGAG 3 cut(s) 152, 391, 1728
BsaAI YACGTR 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 431, 1161
Bsc4I CCNNNNNNNGG 1 cut(s) 1526
Bse118I RCCGGY 1 cut(s) 1021
Bse1I ACTGG 2 cut(s) 1404, 1424
Bse21I CCTNAGG 1 cut(s) 1512
Bse3DI GCAATG 3 cut(s) 503, 597, 1434
BseDI CCNNGG 2 cut(s) 431, 1161
BseGI GGATG 5 cut(s) 427, 680, 1043, 1145, 1622
BseLI CCNNNNNNNGG 1 cut(s) 1526
BseMI GCAATG 3 cut(s) 503, 597, 1434
BseMII CTCAG 5 cut(s) 60, 151, 656, 771, 1352
BseNI ACTGG 2 cut(s) 1404, 1424
BseRI GAGGAG 2 cut(s) 420, 663
BseSI GKGCMC 1 cut(s) 1520
BseXI GCAGC 4 cut(s) 231, 389, 1401, 1713
BsgI GTGCAG 1 cut(s) 1720
Bsh1285I CGRYCG 2 cut(s) 115, 1499
BshFI GGCC 1 cut(s) 1518
BshNI GGYRCC 1 cut(s) 1400
BsiEI CGRYCG 2 cut(s) 115, 1499
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 1022
BslFI GGGAC 2 cut(s) 108, 1462
BslI CCNNNNNNNGG 1 cut(s) 1526
BsmAI GTCTC 3 cut(s) 96, 372, 430
BsmFI GGGAC 2 cut(s) 108, 1462
BsmI GAATGC 4 cut(s) 200, 257, 359, 801
BsnI GGCC 1 cut(s) 1518
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 902
Bsp120I GGGCCC 1 cut(s) 1516
Bsp1286I GDGCHC 2 cut(s) 138, 1520
Bsp143I GATC 5 cut(s) 39, 212, 863, 1268, 1496
BspACI CCGC 4 cut(s) 63, 255, 455, 486
BspANI GGCC 1 cut(s) 1518
BspCNI CTCAG 5 cut(s) 59, 150, 655, 770, 1351
BspHI TCATGA 2 cut(s) 1280, 1754
BspLI GGNNCC 4 cut(s) 124, 1176, 1402, 1518
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 1641
BspT104I TTCGAA 1 cut(s) 902
BspT107I GGYRCC 1 cut(s) 1400
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 3 cut(s) 503, 597, 1434
BsrFI RCCGGY 1 cut(s) 1021
BsrI ACTGG 2 cut(s) 1404, 1424
BssAI RCCGGY 1 cut(s) 1021
BssECI CCNNGG 2 cut(s) 431, 1161
BssMI GATC 5 cut(s) 39, 212, 863, 1268, 1496
BssT1I CCWWGG 1 cut(s) 1161
Bst4CI ACNGT 4 cut(s) 55, 979, 1586, 1651
Bst6I CTCTTC 7 cut(s) 12, 30, 79, 1036, 1257, 1624, 1641
BstAPI GCANNNNNTGC 2 cut(s) 836, 1407
BstBAI YACGTR 1 cut(s) 390
BstBI TTCGAA 1 cut(s) 902
BstC8I GCNNGC 4 cut(s) 12, 859, 1298, 1727
BstF5I GGATG 5 cut(s) 427, 680, 1043, 1145, 1622
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 5 cut(s) 42, 215, 866, 1271, 1499
BstMAI GTCTC 3 cut(s) 96, 372, 430
BstMBI GATC 5 cut(s) 39, 212, 863, 1268, 1496
BstMCI CGRYCG 2 cut(s) 115, 1499
BstMWI GCNNNNNNNGC 6 cut(s) 20, 142, 836, 867, 1398, 1407
BstNSI RCATGY 3 cut(s) 1160, 1300, 1377
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 1520
BstV1I GCAGC 4 cut(s) 231, 389, 1401, 1713
BstV2I GAAGAC 2 cut(s) 49, 1587
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 1512
BsuRI GGCC 1 cut(s) 1518
BtsCI GGATG 5 cut(s) 427, 680, 1043, 1145, 1622
BtsIMutI CAGTG 1 cut(s) 1582
Cac8I GCNNGC 4 cut(s) 12, 859, 1298, 1727
CaiI CAGNNNCTG 1 cut(s) 381
CciI TCATGA 2 cut(s) 1280, 1754
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 1021
Cfr13I GGNCC 5 cut(s) 122, 1019, 1516, 1517, 1783
Csp6I GTAC 4 cut(s) 4, 834, 1493, 1541
CviAII CATG 9 cut(s) 119, 689, 1157, 1281, 1292, 1297, 1374, 1487, 1755
CviQI GTAC 4 cut(s) 4, 834, 1493, 1541
DpnI GATC 5 cut(s) 41, 214, 865, 1270, 1498
DpnII GATC 5 cut(s) 39, 212, 863, 1268, 1496
DraIII CACNNNGTG 1 cut(s) 1457
Eam1104I CTCTTC 7 cut(s) 12, 30, 79, 1036, 1257, 1624, 1641
EarI CTCTTC 7 cut(s) 12, 30, 79, 1036, 1257, 1624, 1641
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 1161
Eco24I GRGCYC 2 cut(s) 138, 1520
Eco31I GGTCTC 1 cut(s) 430
Eco32I GATATC 1 cut(s) 1348
Eco47I GGWCC 3 cut(s) 122, 1019, 1783
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 807, 1011, 1676
Eco81I CCTNAGG 1 cut(s) 1512
Eco88I CYCGRG 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 2 cut(s) 1516, 1517
EcoRV GATATC 1 cut(s) 1348
EcoT14I CCWWGG 1 cut(s) 1161
EcoT38I GRGCYC 2 cut(s) 138, 1520
ErhI CCWWGG 1 cut(s) 1161
FaeI CATG 9 cut(s) 122, 692, 1160, 1284, 1295, 1300, 1377, 1490, 1758
FalI AAGNNNNNCTT 2 cut(s) 916, 948
FaqI GGGAC 2 cut(s) 108, 1462
FatI CATG 9 cut(s) 118, 688, 1156, 1280, 1291, 1296, 1373, 1486, 1754
FbaI TGATCA 1 cut(s) 212
FblI GTMKAC 2 cut(s) 849, 1553
Fnu4HI GCNGC 4 cut(s) 220, 403, 1390, 1702
FokI GGATG 5 cut(s) 434, 687, 1050, 1152, 1609
FriOI GRGCYC 2 cut(s) 138, 1520
Fsp4HI GCNGC 4 cut(s) 220, 403, 1390, 1702
FspBI CTAG 3 cut(s) 31, 840, 1521
GlaI GCGC 1 cut(s) 298
GluI GCNGC 4 cut(s) 220, 403, 1390, 1702
GsuI CTGGAG 1 cut(s) 1661
HaeIII GGCC 1 cut(s) 1518
HapII CCGG 1 cut(s) 1022
HhaI GCGC 1 cut(s) 299
Hin1II CATG 9 cut(s) 122, 692, 1160, 1284, 1295, 1300, 1377, 1490, 1758
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 2 cut(s) 850, 1554
HindII GTYRAC 2 cut(s) 850, 1554
HpaII CCGG 1 cut(s) 1022
HphI GGTGA 2 cut(s) 489, 1145
Hpy166II GTNNAC 2 cut(s) 850, 1554
Hpy8I GTNNAC 2 cut(s) 850, 1554
Hpy99I CGWCG 1 cut(s) 1276
HpyAV CCTTC 6 cut(s) 235, 782, 1123, 1439, 1584, 1697
HpyCH4III ACNGT 4 cut(s) 55, 979, 1586, 1651
HpyCH4IV ACGT 5 cut(s) 389, 680, 704, 1664, 1679
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 142, 836, 867, 1398, 1407
HpySE526I ACGT 5 cut(s) 389, 680, 704, 1664, 1679
Hsp92II CATG 9 cut(s) 122, 692, 1160, 1284, 1295, 1300, 1377, 1490, 1758
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 212
Kzo9I GATC 5 cut(s) 39, 212, 863, 1268, 1496
LguI GCTCTTC 1 cut(s) 1641
LmnI GCTCC 3 cut(s) 551, 650, 1174
Lsp1109I GCAGC 4 cut(s) 231, 389, 1401, 1713
LweI GCATC 5 cut(s) 374, 442, 577, 961, 1223
MaeI CTAG 3 cut(s) 31, 840, 1521
MaeII ACGT 5 cut(s) 389, 680, 704, 1664, 1679
MaeIII GTNAC 5 cut(s) 616, 880, 1325, 1506, 1711
MalI GATC 5 cut(s) 41, 214, 865, 1270, 1498
MboI GATC 5 cut(s) 39, 212, 863, 1268, 1496
MfeI CAATTG 1 cut(s) 1225
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 138, 1520
MlyI GAGTC 6 cut(s) 84, 726, 747, 966, 1278, 1545
MmeI TCCRAC 2 cut(s) 218, 1189
MroXI GAANNNNTTC 2 cut(s) 1465, 1594
MseI TTAA 5 cut(s) 163, 444, 535, 1101, 1789
MslI CAYNNNNRTG 2 cut(s) 1054, 1753
MspI CCGG 1 cut(s) 1022
MunI CAATTG 1 cut(s) 1225
Mva1269I GAATGC 4 cut(s) 200, 257, 359, 801
MwoI GCNNNNNNNGC 6 cut(s) 20, 142, 836, 867, 1398, 1407
NdeII GATC 5 cut(s) 39, 212, 863, 1268, 1496
NlaIII CATG 9 cut(s) 122, 692, 1160, 1284, 1295, 1300, 1377, 1490, 1758
NlaIV GGNNCC 4 cut(s) 124, 1176, 1402, 1518
NmuCI GTSAC 3 cut(s) 616, 1325, 1506
NspI RCATGY 3 cut(s) 1160, 1300, 1377
NspV TTCGAA 1 cut(s) 902
PaeI GCATGC 1 cut(s) 1300
PagI TCATGA 2 cut(s) 1280, 1754
PciSI GCTCTTC 1 cut(s) 1641
PctI GAATGC 4 cut(s) 200, 257, 359, 801
PdmI GAANNNNTTC 2 cut(s) 1465, 1594
PfeI GAWTC 8 cut(s) 96, 183, 278, 317, 899, 927, 1074, 1277
PkrI GCNGC 4 cut(s) 221, 404, 1391, 1703
Ple19I CGATCG 1 cut(s) 1499
PleI GAGTC 6 cut(s) 84, 725, 746, 965, 1278, 1544
PpsI GAGTC 6 cut(s) 84, 725, 746, 965, 1278, 1544
Ppu21I YACGTR 1 cut(s) 390
PsiI TTATAA 1 cut(s) 1191
Psp124BI GAGCTC 1 cut(s) 138
Psp1406I AACGTT 2 cut(s) 704, 1679
PspN4I GGNNCC 4 cut(s) 124, 1176, 1402, 1518
PspOMI GGGCCC 1 cut(s) 1516
PspPI GGNCC 5 cut(s) 122, 1019, 1516, 1517, 1783
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 381
PsuI RGATCY 1 cut(s) 39
PvuI CGATCG 1 cut(s) 1499
RsaI GTAC 4 cut(s) 5, 835, 1494, 1542
RsaNI GTAC 4 cut(s) 4, 834, 1493, 1541
RseI CAYNNNNRTG 2 cut(s) 1054, 1753
SacI GAGCTC 1 cut(s) 138
SalI GTCGAC 2 cut(s) 848, 1552
SapI GCTCTTC 1 cut(s) 1641
SaqAI TTAA 5 cut(s) 163, 444, 535, 1101, 1789
SatI GCNGC 4 cut(s) 220, 403, 1390, 1702
Sau3AI GATC 5 cut(s) 39, 212, 863, 1268, 1496
Sau96I GGNCC 5 cut(s) 122, 1019, 1516, 1517, 1783
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 6 cut(s) 84, 726, 747, 966, 1278, 1545
SduI GDGCHC 2 cut(s) 138, 1520
SfaNI GCATC 5 cut(s) 374, 442, 577, 961, 1223
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 902
SinI GGWCC 3 cut(s) 122, 1019, 1783
SmiMI CAYNNNNRTG 2 cut(s) 1054, 1753
SmlI CTYRAG 3 cut(s) 131, 406, 1707
SmoI CTYRAG 3 cut(s) 131, 406, 1707
SphI GCATGC 1 cut(s) 1300
SsiI CCGC 4 cut(s) 63, 255, 455, 486
SspI AATATT 1 cut(s) 266
SspMI CTAG 3 cut(s) 31, 840, 1521
SstI GAGCTC 1 cut(s) 138
StyI CCWWGG 1 cut(s) 1161
TaaI ACNGT 4 cut(s) 55, 979, 1586, 1651
TaiI ACGT 5 cut(s) 392, 683, 707, 1667, 1682
TaqI TCGA 6 cut(s) 186, 849, 902, 1271, 1546, 1553
TaqII GACCGA 1 cut(s) 101
TatI WGTACW 2 cut(s) 3, 833
TfiI GAWTC 8 cut(s) 96, 183, 278, 317, 899, 927, 1074, 1277
Tru1I TTAA 5 cut(s) 163, 444, 535, 1101, 1789
Tru9I TTAA 5 cut(s) 163, 444, 535, 1101, 1789
TscAI CASTG 1 cut(s) 1589
TseFI GTSAC 3 cut(s) 616, 1325, 1506
TseI GCWGC 4 cut(s) 219, 402, 1389, 1701
Tsp45I GTSAC 3 cut(s) 616, 1325, 1506
TspGWI ACGGA 2 cut(s) 687, 1289
TspRI CASTG 1 cut(s) 1589
VpaK11BI GGWCC 3 cut(s) 122, 1019, 1783
XapI RAATTY 3 cut(s) 467, 1086, 1167
XceI RCATGY 3 cut(s) 1160, 1300, 1377
XmiI GTMKAC 2 cut(s) 849, 1553
XmnI GAANNNNTTC 2 cut(s) 1465, 1594
XspI CTAG 3 cut(s) 31, 840, 1521
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.