Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005866

Physical Location & Seq

Genomic Coordinates Forward (+)

9134193 .. 9141562

Gene Structure 7370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGGCGGTGAGGCTAACGACCTGGTTTGTGAGCCAGGGGATTAGCATTTCCGGTTCAAACTCCAGGCGCTCACATTCAAATCCGCGCTTCTCATTTGCTTCCTCCTCTCCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTGTAAGCTACGCCACCGGAATCTCAGTTGTACTTGCCTGCAGAAGAGGCAAAGAGCTAGGAGGAAATCCTCTCAGGAACAGTCTTCTGCGGATTTCCTGCCAAATGGCGAAGAGGACTCTGAATCGGAGAGTGCTTCGGTCGGCATGGTCCCTCTCTTGAGCTCAGAAAGCGTATCTGATGATGATGTTAATACTATCAATTCAAACGATTCGATTTCGAATGCTCTTACTACATCTGATCAAGCAGCACCTTCGGAGTTGGTTGGAATGATAAGGAATGCGGAGAAAAATATTCTTCTCTTGAATCAAGCTCGGGTTAGTGCTCTTCAAGACCTTGACAAGATTCTATCTGAAAAGGAAGAATTGCAAGGAGAAATGAATGCTTTGGAAATGAAATTGGCAGAGACTGATGCACGTATCAGAGTGGCTGCACAAGAGAAAATAAGGATGGAACTCCTCGGAGACCACTTAAACCAGATGCGGAATGAACAGAATTTCAATGGTGATGGTGCGGAAACAAGCAATGGGGTTGAGATTTTTGAGAGTGAAAGTGAGCTATTTAATGAAGAAGCTCCTTTGCCATACCAAAGTAGCATCAATTCGCTTGTAGCAAATCTTAGTTCATTGAGATTAGAAAATGTGTCACTTAGGAATGATATACAGGAACTCAGAGAGCAGCTTAGTAATATGAAAAATACGGATGAACGTGTGGTCATGCTTGAAAAACAACGTTCGTCTTTGGAGTCTGCCCTAAAAGATTTGGAGTCCAAGTTGGTAGTTTCTCAGGAAGATGTTTCCAAACTTTCCAATCTGAAGGTTGAATGCAAAGGTTTATGGGAAAAGGTGGAGAATTTGCAAGTACTGCTAGATAAGTCGACCAAGCAGGCAGATCAAGCTATTATAGTGTTGCAGCAAAATCAGGAGATTCGAAAAAAGGTTGATAAATTAGAAGAATCTCTTGAAAAAGCTAATGTGTATAAGGAGTCATCAGAAAAGATGCAACAGTATAATGAGCTTATGCAACAAAAGATAAAACTAATGGAGGACCGGCTTCAGCGTTCGGATGAAGAGATACATTCTTATGTTCAGTTATATCAAGAATCTGTGGAGGAATTTCAAGATACCTTAAATACTCTAAAAGAAGAAAGCAAGAGAAGGGTGATGGATGAACCTGTTGATGACATGCCTTGGGAATTTTGGAGCCGTTTATTGCTTATAATAGATGGTTGGTTGTTGGAAAAGAAAATATCAATTGATGATGCAAAGGCGTTGAGAGAAATGGTATGGAAGAGAGATCGACGGATTCATGACTCATACATGGCATGCAAGGAAAAGAATGTAAATGAGGCTGTGACTACATTTCTCAGACTGATATCATCACAAACAAGTTCAGGATTGCATGTCGTTCATATCGCAGCAGAGATGGCACCAGTTGCTAAGGTTGGTGGTTTGGGTGATGTTGTAACTGGTCTTAGTAAAGCATTGCAGAAGAAGGGACACCTTGTGGAAATTATTCTTCCCAAATATGATTGCATGGAGTACGATCGTGTTCGTGACCTAAGGGCCCTAGATGTGGCAGTAGAGTCGTACTTCGATGGTCGACTATTCAAGAATAAAATCTGGGTTGGCACTGTTGAAGGTCTTCCTGTATATTTTATTGAGCCTCTTCATCCCGATAAGCTCTTCTGGAGAGGACAGGTTTATGGAGAACGTGATGATTTCAAACGTTTTTCCTTCTTCAGTCGTGCAGCCCTTGAGTTACTTCTTCAAGCTGGCAAGAAACCTGACATTATTCATTGTCATGATTGGCAGACAGCTTTCGTGGCTCCACTTTATTGGGACTTATATGCCCCAAAGGGTTTAAACTCGGCTAGGATATGTTTTACCTGCCACAACTTTGAATACCAAGGGACTGCACCTGCTTCAGACTTGGCTTCTTGTGGTCTTGATGTCGGCCAGCTAAACAGAGCAGATAGAATGCAGGACAACTCAGCACATGATAGGATCAATCCGGTTAAGGGTGCAGTTGTATTCTCTAATATCGTGACAACGGTATCACCTACCTATGCGCAAGAGGTGCGGAGCGCTGAGGGTGGACGTGGTCTCCATTCGACACTTAATTTTCATTCTAAAAAGTTCGTTGGAATTCTCAATGGAATTGATGCTGATGCATGGAATCCTGCCACTGATGCATATCTCAAAGTACAGTACACTGCCAATGATCTTGGGGGGAAAGCAGAAAATAAGGAAGCTATTAGAAAGAGTCTAGGGCTTTCATATGCCGATGTCAGGAGACCATTGGTGGGATGCATAACGAGATTGGTGCCACAGAAAGGTGTACATCTCATCAGACATGCGATTTATAGAACATTGGAGCTAGGAGGGCAGTTTGTTCTTTTGGGTTCAAGTCCAGTACATCATATTCAGGTACTGTTCTACATTTCTTTCTATTATTTTATTATGGCTATTTTCCTACCTGGGTACAGTTCTTTGGGTATTATGATTATATTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009011 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019252 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 map00500 map01100 map01110 map02026

Pfam Domains

Protein Families

Glyco_transf_5 Glycos_transf_1

Protein Analysis

888

Amino Acids

100.1

Weight (kDa)

5.76

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_5	PF08323	517 - 757	4.2e-67	Starch synthase catalytic domain
Glyco_transf_4	PF13439	531 - 745	9.1e-09	Glycosyltransferase Family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18240
fragaria_vesca	FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130 FvH4_3g06130
malus_domestica	MD05G1289600.v1.1 MD10G1265500.v1.1
prunus_persica	Prupe.4G076100_v2.0.a1
pyrus_communis	pycom05g26670 pycom10g22140
rosa_chinensis	RchiOBHm_Chr5g0013241
rosa_laevigata	RLG00000032000
rosa_multiflora	Rmu_co8500739.1_g000001 Rmu_sc0004521.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063270
rosa_rugosa	Rorug05G0008200.1 Rorug05G0008300.1 Rorug05G0008400
rosa_samantha	Rh5AG103000 Rh5BG099800 Rh5CG111200 Rh5DG098600
rosa_wichuraiana	Rw5G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1367
AarI	CACCTGC	1 cut(s)	2077
Acc16I	TGCGCA	1 cut(s)	2220
Acc36I	ACCTGC	2 cut(s)	2045, 2077
AccB1I	GGYRCC	2 cut(s)	1576, 2473
AccI	GTMKAC	2 cut(s)	1025, 1750
AccII	CGCG	1 cut(s)	85
AciI	CCGC	7 cut(s)	5, 83, 239, 431, 631, 662, 2230
AclI	AACGTT	2 cut(s)	880, 1876
AclWI	GGATC	1 cut(s)	2162
AcoI	YGGCCR	1 cut(s)	2104
AcsI	RAATTY	5 cut(s)	643, 1000, 1262, 1343, 2295
AcuI	CTGAAG	4 cut(s)	983, 1187, 1873, 2058
AdeI	CACNNNGTG	1 cut(s)	1654
AfeI	AGCGCT	1 cut(s)	2236
AfiI	CCNNNNNNNGG	5 cut(s)	1723, 2168, 2439, 2453, 2483
AflIII	ACRYGT	1 cut(s)	856
AjiI	CACGTC	1 cut(s)	2249
AjnI	CCWGG	4 cut(s)	20, 33, 62, 2626
Alw21I	GWGCWC	2 cut(s)	314, 475
Alw26I	GTCTC	4 cut(s)	548, 606, 2258, 2437
AlwI	GGATC	1 cut(s)	2162
AlwNI	CAGNNNCTG	2 cut(s)	557, 2581
Ama87I	CYCGRG	1 cut(s)	462
Aor51HI	AGCGCT	1 cut(s)	2236
AoxI	GGCC	2 cut(s)	1713, 2104
ApaI	GGGCCC	1 cut(s)	1717
ApeKI	GCWGC	6 cut(s)	395, 578, 826, 1060, 1565, 1898
ApoI	RAATTY	5 cut(s)	643, 1000, 1262, 1343, 2295
Asp700I	GAANNNNTTC	2 cut(s)	1662, 1791
AspLEI	GCGC	4 cut(s)	69, 87, 2221, 2237
AspS9I	GGNCC	4 cut(s)	298, 1195, 1713, 1714
AsuHPI	GGTGA	5 cut(s)	19, 665, 1321, 1616, 2199
AsuII	TTCGAA	2 cut(s)	368, 1078
AvaI	CYCGRG	1 cut(s)	462
AvaII	GGWCC	2 cut(s)	298, 1195
AxyI	CCTNAGG	1 cut(s)	1709
BaeGI	GKGCMC	1 cut(s)	1717
BaeI	ACNNNNGTAYC	2 cut(s)	2187, 2220
BanI	GGYRCC	2 cut(s)	1576, 2473
BanII	GRGCYC	2 cut(s)	314, 1717
BbsI	GAAGAC	2 cut(s)	225, 1784
Bbv12I	GWGCWC	2 cut(s)	314, 475
BbvCI	CCTCAGC	1 cut(s)	2238
BbvI	GCAGC	6 cut(s)	407, 565, 838, 1072, 1577, 1910
BccI	CCATC	6 cut(s)	592, 650, 1306, 1367, 1567, 1739
BceAI	ACGGC	1 cut(s)	1338
BcgI	CGANNNNNNTGC	6 cut(s)	384, 418, 1716, 1750, 2455, 2489
BciT130I	CCWGG	4 cut(s)	22, 35, 64, 2628
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	4 cut(s)	548, 606, 2258, 2437
BfaI	CTAG	7 cut(s)	207, 1016, 1718, 2022, 2417, 2528, 2665
BfmI	CTRYAG	1 cut(s)	188
BfoI	RGCGCY	2 cut(s)	70, 2238
BfuAI	ACCTGC	2 cut(s)	2045, 2077
BisI	GCNGC	6 cut(s)	396, 579, 827, 1061, 1566, 1899
BlsI	GCNGC	6 cut(s)	397, 580, 828, 1062, 1567, 1900
BmcAI	AGTACT	1 cut(s)	1011
Bme1390I	CCNGG	4 cut(s)	22, 35, 64, 2628
Bme18I	GGWCC	2 cut(s)	298, 1195
BmeT110I	CYCGRG	1 cut(s)	462
BmgBI	CACGTC	1 cut(s)	2249
BmgT120I	GGNCC	4 cut(s)	298, 1195, 1713, 1714
BmiI	GGNNCC	6 cut(s)	300, 1352, 1578, 1715, 1977, 2475
BmrFI	CCNGG	4 cut(s)	22, 35, 64, 2628
BmsI	GCATC	9 cut(s)	550, 618, 753, 1137, 1399, 2302, 2308, 2329, 2447
BpiI	GAAGAC	2 cut(s)	225, 1784
BpmI	CTGGAG	2 cut(s)	46, 1858
Bpu10I	CCTNAGC	2 cut(s)	1587, 2238
Bpu14I	TTCGAA	2 cut(s)	368, 1078
BpuEI	CTTGAG	2 cut(s)	328, 1925
BsaAI	YACGTR	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	2343
BsaI	GGTCTC	3 cut(s)	606, 2258, 2437
BsaJI	CCNNGG	5 cut(s)	34, 607, 1337, 2056, 2627
BsaWI	WCCGGW	3 cut(s)	50, 165, 2161
BsaXI	ACNNNNNCTCC	4 cut(s)	905, 935, 2238, 2268
Bsc4I	CCNNNNNNNGG	5 cut(s)	1723, 2168, 2439, 2453, 2483
Bse118I	RCCGGY	1 cut(s)	1197
Bse1I	ACTGG	3 cut(s)	1580, 1621, 2561
Bse21I	CCTNAGG	1 cut(s)	1709
Bse3DI	GCAATG	2 cut(s)	679, 1631
Bse8I	GATNNNNATC	1 cut(s)	2343
BseBI	CCWGG	4 cut(s)	22, 35, 64, 2628
BseDI	CCNNGG	5 cut(s)	34, 607, 1337, 2056, 2627
BseGI	GGATG	6 cut(s)	603, 856, 1219, 1321, 1819, 2462
BseJI	GATNNNNATC	1 cut(s)	2343
BseLI	CCNNNNNNNGG	5 cut(s)	1723, 2168, 2439, 2453, 2483
BseMI	GCAATG	2 cut(s)	679, 1631
BseMII	CTCAG	8 cut(s)	187, 236, 327, 832, 947, 1528, 2154, 2229
BseNI	ACTGG	3 cut(s)	1580, 1621, 2561
BseRI	GAGGAG	2 cut(s)	94, 596
BseSI	GKGCMC	1 cut(s)	1717
BseXI	GCAGC	6 cut(s)	407, 565, 838, 1072, 1577, 1910
BsgI	GTGCAG	4 cut(s)	564, 1917, 2049, 2193
Bsh1236I	CGCG	1 cut(s)	85
Bsh1285I	CGRYCG	2 cut(s)	291, 1696
BshFI	GGCC	2 cut(s)	1715, 2106
BshNI	GGYRCC	2 cut(s)	1576, 2473
BsiEI	CGRYCG	2 cut(s)	291, 1696
BsiHKAI	GWGCWC	2 cut(s)	314, 475
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	4 cut(s)	51, 166, 1198, 2162
BslFI	GGGAC	4 cut(s)	284, 1659, 2003, 2074
BslI	CCNNNNNNNGG	5 cut(s)	1723, 2168, 2439, 2453, 2483
BsmAI	GTCTC	4 cut(s)	548, 606, 2258, 2437
BsmFI	GGGAC	4 cut(s)	284, 1659, 2003, 2074
BsmI	GAATGC	5 cut(s)	376, 433, 535, 977, 2133
BsnI	GGCC	2 cut(s)	1715, 2106
Bso31I	GGTCTC	3 cut(s)	606, 2258, 2437
BsoBI	CYCGRG	1 cut(s)	462
Bsp119I	TTCGAA	2 cut(s)	368, 1078
Bsp120I	GGGCCC	1 cut(s)	1713
Bsp1286I	GDGCHC	3 cut(s)	314, 475, 1717
Bsp1407I	TGTACA	1 cut(s)	2488
Bsp143I	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
BspACI	CCGC	7 cut(s)	5, 83, 239, 431, 631, 662, 2230
BspANI	GGCC	2 cut(s)	1715, 2106
BspCNI	CTCAG	8 cut(s)	186, 235, 326, 831, 946, 1527, 2153, 2230
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	2 cut(s)	1456, 1951
BspLI	GGNNCC	6 cut(s)	300, 1352, 1578, 1715, 1977, 2475
BspMAI	CTGCAG	1 cut(s)	192
BspMI	ACCTGC	2 cut(s)	2045, 2077
BspPI	GGATC	1 cut(s)	2162
BspQI	GCTCTTC	2 cut(s)	480, 1838
BspT104I	TTCGAA	2 cut(s)	368, 1078
BspT107I	GGYRCC	2 cut(s)	1576, 2473
BspTNI	GGTCTC	3 cut(s)	606, 2258, 2437
BsrDI	GCAATG	2 cut(s)	679, 1631
BsrFI	RCCGGY	1 cut(s)	1197
BsrGI	TGTACA	1 cut(s)	2488
BsrI	ACTGG	3 cut(s)	1580, 1621, 2561
BssAI	RCCGGY	1 cut(s)	1197
BssECI	CCNNGG	5 cut(s)	34, 607, 1337, 2056, 2627
BssMI	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
BssT1I	CCWWGG	2 cut(s)	1337, 2056
Bst2UI	CCWGG	4 cut(s)	22, 35, 64, 2628
Bst4CI	ACNGT	7 cut(s)	231, 1155, 1783, 2203, 2358, 2583, 2636
Bst6I	CTCTTC	7 cut(s)	188, 255, 480, 1212, 1433, 1821, 1838
BstAPI	GCANNNNNTGC	3 cut(s)	1012, 1583, 2227
BstAUI	TGTACA	1 cut(s)	2488
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	2 cut(s)	368, 1078
BstC8I	GCNNGC	5 cut(s)	188, 1035, 1474, 1924, 2108
BstF5I	GGATG	6 cut(s)	603, 856, 1219, 1321, 1819, 2462
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	2 cut(s)	70, 2238
BstHHI	GCGC	4 cut(s)	69, 87, 2221, 2237
BstKTI	GATC	6 cut(s)	391, 1042, 1447, 1696, 2157, 2374
BstMAI	GTCTC	4 cut(s)	548, 606, 2258, 2437
BstMBI	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
BstMCI	CGRYCG	2 cut(s)	291, 1696
BstNI	CCWGG	4 cut(s)	22, 35, 64, 2628
BstNSI	RCATGY	4 cut(s)	1336, 1476, 1553, 2507
BstSCI	CCNGG	4 cut(s)	20, 33, 62, 2626
BstSFI	CTRYAG	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	1717
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	6 cut(s)	407, 565, 838, 1072, 1577, 1910
BstV2I	GAAGAC	2 cut(s)	225, 1784
BstXI	CCANNNNNNTGG	1 cut(s)	1986
Bsu36I	CCTNAGG	1 cut(s)	1709
BsuRI	GGCC	2 cut(s)	1715, 2106
BtrI	CACGTC	1 cut(s)	2249
BtsCI	GGATG	6 cut(s)	603, 856, 1219, 1321, 1819, 2462
BtsI	GCAGTG	1 cut(s)	2361
BtsIMutI	CAGTG	3 cut(s)	1779, 2334, 2361
BveI	ACCTGC	2 cut(s)	2045, 2077
Cac8I	GCNNGC	5 cut(s)	188, 1035, 1474, 1924, 2108
CaiI	CAGNNNCTG	2 cut(s)	557, 2581
CciI	TCATGA	2 cut(s)	1456, 1951
CfoI	GCGC	4 cut(s)	69, 87, 2221, 2237
Cfr10I	RCCGGY	1 cut(s)	1197
Cfr13I	GGNCC	4 cut(s)	298, 1195, 1713, 1714
CsiI	ACCWGGT	1 cut(s)	20
DpnI	GATC	6 cut(s)	390, 1041, 1446, 1695, 2156, 2373
DpnII	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
DraI	TTTAAA	1 cut(s)	2013
DraIII	CACNNNGTG	1 cut(s)	1654
EaeI	YGGCCR	1 cut(s)	2104
Eam1104I	CTCTTC	7 cut(s)	188, 255, 480, 1212, 1433, 1821, 1838
EarI	CTCTTC	7 cut(s)	188, 255, 480, 1212, 1433, 1821, 1838
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	1337, 2056
Eco24I	GRGCYC	2 cut(s)	314, 1717
Eco31I	GGTCTC	3 cut(s)	606, 2258, 2437
Eco32I	GATATC	1 cut(s)	1524
Eco47I	GGWCC	2 cut(s)	298, 1195
Eco47III	AGCGCT	1 cut(s)	2236
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	4 cut(s)	983, 1187, 1873, 2058
Eco81I	CCTNAGG	1 cut(s)	1709
Eco88I	CYCGRG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	312
EcoO109I	RGGNCCY	2 cut(s)	1713, 1714
EcoRI	GAATTC	1 cut(s)	2295
EcoRII	CCWGG	4 cut(s)	20, 33, 62, 2626
EcoRV	GATATC	1 cut(s)	1524
EcoT14I	CCWWGG	2 cut(s)	1337, 2056
EcoT22I	ATGCAT	3 cut(s)	2323, 2344, 2462
EcoT38I	GRGCYC	2 cut(s)	314, 1717
ErhI	CCWWGG	2 cut(s)	1337, 2056
FalI	AAGNNNNNCTT	2 cut(s)	1092, 1124
FaqI	GGGAC	4 cut(s)	284, 1659, 2003, 2074
FauNDI	CATATG	1 cut(s)	2428
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	2 cut(s)	1025, 1750
Fnu4HI	GCNGC	6 cut(s)	396, 579, 827, 1061, 1566, 1899
FokI	GGATG	6 cut(s)	610, 863, 1226, 1328, 1806, 2469
FriOI	GRGCYC	2 cut(s)	314, 1717
Fsp4HI	GCNGC	6 cut(s)	396, 579, 827, 1061, 1566, 1899
FspBI	CTAG	7 cut(s)	207, 1016, 1718, 2022, 2417, 2528, 2665
FspI	TGCGCA	1 cut(s)	2220
GlaI	GCGC	4 cut(s)	68, 86, 2220, 2236
GluI	GCNGC	6 cut(s)	396, 579, 827, 1061, 1566, 1899
GsuI	CTGGAG	2 cut(s)	46, 1858
HaeII	RGCGCY	2 cut(s)	70, 2238
HaeIII	GGCC	2 cut(s)	1715, 2106
HapII	CCGG	4 cut(s)	51, 166, 1198, 2162
HhaI	GCGC	4 cut(s)	69, 87, 2221, 2237
Hin6I	GCGC	4 cut(s)	67, 85, 2219, 2235
HinP1I	GCGC	4 cut(s)	67, 85, 2219, 2235
HincII	GTYRAC	2 cut(s)	1026, 1751
HindII	GTYRAC	2 cut(s)	1026, 1751
HpaII	CCGG	4 cut(s)	51, 166, 1198, 2162
HphI	GGTGA	5 cut(s)	19, 665, 1321, 1616, 2199
Hpy166II	GTNNAC	5 cut(s)	1026, 1751, 2246, 2361, 2489
Hpy8I	GTNNAC	5 cut(s)	1026, 1751, 2246, 2361, 2489
Hpy99I	CGWCG	1 cut(s)	1452
HpyAV	CCTTC	6 cut(s)	411, 958, 1299, 1636, 1781, 1894
HpyCH4III	ACNGT	7 cut(s)	231, 1155, 1783, 2203, 2358, 2583, 2636
HpyCH4IV	ACGT	6 cut(s)	565, 856, 880, 1861, 1876, 2248
HpySE526I	ACGT	6 cut(s)	565, 856, 880, 1861, 1876, 2248
HspAI	GCGC	4 cut(s)	67, 85, 2219, 2235
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
LguI	GCTCTTC	2 cut(s)	480, 1838
LmnI	GCTCC	5 cut(s)	727, 1350, 1981, 2232, 2524
Lsp1109I	GCAGC	6 cut(s)	407, 565, 838, 1072, 1577, 1910
LweI	GCATC	9 cut(s)	550, 618, 753, 1137, 1399, 2302, 2308, 2329, 2447
MabI	ACCWGGT	1 cut(s)	20
MaeI	CTAG	7 cut(s)	207, 1016, 1718, 2022, 2417, 2528, 2665
MaeII	ACGT	6 cut(s)	565, 856, 880, 1861, 1876, 2248
MaeIII	GTNAC	6 cut(s)	792, 1501, 1612, 1703, 1908, 2194
MalI	GATC	6 cut(s)	390, 1041, 1446, 1695, 2156, 2373
MboI	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
MfeI	CAATTG	1 cut(s)	1401
MhlI	GDGCHC	3 cut(s)	314, 475, 1717
MlyI	GAGTC	7 cut(s)	260, 902, 923, 1142, 1454, 1742, 2422
MmeI	TCCRAC	3 cut(s)	394, 1365, 2272
Mph1103I	ATGCAT	3 cut(s)	2323, 2344, 2462
MroXI	GAANNNNTTC	2 cut(s)	1662, 1791
MseI	TTAA	7 cut(s)	339, 620, 711, 1277, 2012, 2166, 2268
MslI	CAYNNNNRTG	2 cut(s)	1230, 1950
MspI	CCGG	4 cut(s)	51, 166, 1198, 2162
MspR9I	CCNGG	4 cut(s)	22, 35, 64, 2628
MssI	GTTTAAAC	1 cut(s)	2013
MunI	CAATTG	1 cut(s)	1401
Mva1269I	GAATGC	5 cut(s)	376, 433, 535, 977, 2133
MvaI	CCWGG	4 cut(s)	22, 35, 64, 2628
MvnI	CGCG	1 cut(s)	85
NdeI	CATATG	1 cut(s)	2428
NdeII	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
NlaIV	GGNNCC	6 cut(s)	300, 1352, 1578, 1715, 1977, 2475
NmeAIII	GCCGAG	1 cut(s)	1997
NmuCI	GTSAC	4 cut(s)	792, 1501, 1703, 2194
NsbI	TGCGCA	1 cut(s)	2220
NsiI	ATGCAT	3 cut(s)	2323, 2344, 2462
NspI	RCATGY	4 cut(s)	1336, 1476, 1553, 2507
NspV	TTCGAA	2 cut(s)	368, 1078
PaeI	GCATGC	1 cut(s)	1476
PagI	TCATGA	2 cut(s)	1456, 1951
PaqCI	CACCTGC	1 cut(s)	2077
PciSI	GCTCTTC	2 cut(s)	480, 1838
PctI	GAATGC	5 cut(s)	376, 433, 535, 977, 2133
PdmI	GAANNNNTTC	2 cut(s)	1662, 1791
PflFI	GACNNNGTC	1 cut(s)	2250
PkrI	GCNGC	6 cut(s)	397, 580, 828, 1062, 1567, 1900
Ple19I	CGATCG	1 cut(s)	1696
PleI	GAGTC	7 cut(s)	260, 901, 922, 1141, 1454, 1741, 2421
PmeI	GTTTAAAC	1 cut(s)	2013
PpsI	GAGTC	7 cut(s)	260, 901, 922, 1141, 1454, 1741, 2421
Ppu21I	YACGTR	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	1367
Psp124BI	GAGCTC	1 cut(s)	314
Psp1406I	AACGTT	2 cut(s)	880, 1876
Psp6I	CCWGG	4 cut(s)	20, 33, 62, 2626
PspGI	CCWGG	4 cut(s)	20, 33, 62, 2626
PspN4I	GGNNCC	6 cut(s)	300, 1352, 1578, 1715, 1977, 2475
PspOMI	GGGCCC	1 cut(s)	1713
PspPI	GGNCC	4 cut(s)	298, 1195, 1713, 1714
PstI	CTGCAG	1 cut(s)	192
PstNI	CAGNNNCTG	2 cut(s)	557, 2581
PsyI	GACNNNGTC	1 cut(s)	2250
PvuI	CGATCG	1 cut(s)	1696
RseI	CAYNNNNRTG	2 cut(s)	1230, 1950
SacI	GAGCTC	1 cut(s)	314
SalI	GTCGAC	2 cut(s)	1024, 1749
SapI	GCTCTTC	2 cut(s)	480, 1838
SaqAI	TTAA	7 cut(s)	339, 620, 711, 1277, 2012, 2166, 2268
SatI	GCNGC	6 cut(s)	396, 579, 827, 1061, 1566, 1899
Sau3AI	GATC	6 cut(s)	388, 1039, 1444, 1693, 2154, 2371
Sau96I	GGNCC	4 cut(s)	298, 1195, 1713, 1714
ScaI	AGTACT	1 cut(s)	1011
SchI	GAGTC	7 cut(s)	260, 902, 923, 1142, 1454, 1742, 2422
ScrFI	CCNGG	4 cut(s)	22, 35, 64, 2628
SduI	GDGCHC	3 cut(s)	314, 475, 1717
SexAI	ACCWGGT	1 cut(s)	20
SfaNI	GCATC	9 cut(s)	550, 618, 753, 1137, 1399, 2302, 2308, 2329, 2447
SfcI	CTRYAG	1 cut(s)	188
SfuI	TTCGAA	2 cut(s)	368, 1078
SinI	GGWCC	2 cut(s)	298, 1195
SmiMI	CAYNNNNRTG	2 cut(s)	1230, 1950
SmlI	CTYRAG	2 cut(s)	307, 1904
SmoI	CTYRAG	2 cut(s)	307, 1904
SphI	GCATGC	1 cut(s)	1476
SsiI	CCGC	7 cut(s)	5, 83, 239, 431, 631, 662, 2230
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	7 cut(s)	207, 1016, 1718, 2022, 2417, 2528, 2665
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	4 cut(s)	20, 33, 62, 2626
StyI	CCWWGG	2 cut(s)	1337, 2056
TaaI	ACNGT	7 cut(s)	231, 1155, 1783, 2203, 2358, 2583, 2636
TaiI	ACGT	6 cut(s)	568, 859, 883, 1864, 1879, 2251
TaqI	TCGA	8 cut(s)	362, 368, 1025, 1078, 1447, 1743, 1750, 2261
TaqII	GACCGA	1 cut(s)	277
TatI	WGTACW	6 cut(s)	179, 1009, 2353, 2358, 2488, 2563
Tru1I	TTAA	7 cut(s)	339, 620, 711, 1277, 2012, 2166, 2268
Tru9I	TTAA	7 cut(s)	339, 620, 711, 1277, 2012, 2166, 2268
TscAI	CASTG	3 cut(s)	1786, 2341, 2368
TseFI	GTSAC	4 cut(s)	792, 1501, 1703, 2194
TseI	GCWGC	6 cut(s)	395, 578, 826, 1060, 1565, 1898
Tsp45I	GTSAC	4 cut(s)	792, 1501, 1703, 2194
TspGWI	ACGGA	2 cut(s)	863, 1465
TspRI	CASTG	3 cut(s)	1786, 2341, 2368
Tth111I	GACNNNGTC	1 cut(s)	2250
VpaK11BI	GGWCC	2 cut(s)	298, 1195
XapI	RAATTY	5 cut(s)	643, 1000, 1262, 1343, 2295
XceI	RCATGY	4 cut(s)	1336, 1476, 1553, 2507
XmiI	GTMKAC	2 cut(s)	1025, 1750
XmnI	GAANNNNTTC	2 cut(s)	1662, 1791
XspI	CTAG	7 cut(s)	207, 1016, 1718, 2022, 2417, 2528, 2665
ZrmI	AGTACT	1 cut(s)	1011
Zsp2I	ATGCAT	3 cut(s)	2323, 2344, 2462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.