Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Forward (+)

26005433 .. 26006545

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAAGCAAAAGAGTGTGGGCAACGTGTTACGTGTGCGGTGCATCATCTAATAGTGTCGAACAACGCGGGTGACATAAGTAAACGTCATCAACAGCAACCTGTGACGTCGCACGGTGCGCAACTGCCGTTGACGTTAAAGTCTACGCTTCTCTCTCTTCTCTCTCTCTCAACAGTTTATAAAACCCCGGTCCTCAAACGCCACTTCTACACCTTGAACTTTAATCGCAATATGCAATCAGAAACTATCCCACAGGGAACATGGATTCCGGGCACTCGGCCCGGCCGCGCCGCACTGTCCTCACGTGACGTCCCAAGCGAGCAACATGTGGCGGCGGCCAGCGTACAAAAGCTAGTGTCAGAGAATGCCGTCACGGTTGTCGGGCGACGTGGCTGCTGCATGTGTCACGTCGTTAAACGGCTGCTCCTCGGCCACACTGGCGTTGTCATTGAATTGCGGAAACTGACCGGAGAAGGCCAGGAGGACTGGCAGCAGTTTCCGGTGGTGTTTGTAGGCGGGAAGTTGTTTGGTGGTTTGGAGAGGGTTATGCTGGAGCTTTGTGGCTTTGAATTTTTAGTTGCTTTTTTTTCTTTTCTGGGTTTTTTTTGGGTTTGTGATTCTGCAATTTTCAATAATTTACTTAACTTACATATGATATATTTGGATTCAATAAAAAAGTTGGAGGAATACATTTCAGTAGCTGTCTTTAATTCTGTTGAATTTTTTTTTTTTTTTTTAATTTTATATGATGTAATTTTTCAAATTTATGCTAATGACGGACAGCAGGCGAACATCCAATGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

269

Amino Acids

30.19

Weight (kDa)

8.46

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AasI	GACNNNNNNGTC	1 cut(s)	139
AatII	GACGTC	2 cut(s)	110, 312
Acc16I	TGCGCA	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	2 cut(s)	68, 288
AciI	CCGC	8 cut(s)	38, 68, 286, 291, 332, 335, 457, 516
AcoI	YGGCCR	3 cut(s)	283, 336, 430
AcsI	RAATTY	3 cut(s)	569, 719, 762
AcvI	CACGTG	1 cut(s)	305
AcyI	GRCGYC	2 cut(s)	107, 309
AfaI	GTAC	1 cut(s)	345
AflIII	ACRYGT	3 cut(s)	25, 32, 325
AgsI	TTSAA	7 cut(s)	217, 452, 569, 631, 669, 719, 761
AjiI	CACGTC	2 cut(s)	389, 409
AjnI	CCWGG	1 cut(s)	477
AloI	GAACNNNNNNTCC	2 cut(s)	250, 282
AluBI	AGCT	3 cut(s)	352, 556, 701
AluI	AGCT	3 cut(s)	352, 556, 701
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	5 cut(s)	278, 283, 336, 430, 475
ApeKI	GCWGC	4 cut(s)	393, 396, 421, 490
ApoI	RAATTY	3 cut(s)	569, 719, 762
AspLEI	GCGC	2 cut(s)	121, 290
AspS9I	GGNCC	2 cut(s)	190, 279
AsuC2I	CCSGG	3 cut(s)	188, 270, 282
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	275
BbrPI	CACGTG	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	380, 383, 408, 502
BceAI	ACGGC	3 cut(s)	112, 353, 434
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	1 cut(s)	479
BcnI	CCSGG	3 cut(s)	188, 270, 282
BfaI	CTAG	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	438
BisI	GCNGC	8 cut(s)	286, 291, 333, 336, 394, 397, 422, 491
BlsI	GCNGC	8 cut(s)	287, 292, 334, 337, 395, 398, 423, 492
Bme1390I	CCNGG	4 cut(s)	188, 270, 282, 479
Bme18I	GGWCC	1 cut(s)	190
BmgBI	CACGTC	2 cut(s)	389, 409
BmgT120I	GGNCC	2 cut(s)	190, 279
BmrFI	CCNGG	4 cut(s)	188, 270, 282, 479
BmsI	GCATC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	572
BpuMI	CCSGG	3 cut(s)	188, 270, 282
BsaAI	YACGTR	2 cut(s)	33, 305
BsaHI	GRCGYC	2 cut(s)	107, 309
BsaJI	CCNNGG	2 cut(s)	186, 427
BsaWI	WCCGGW	2 cut(s)	467, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse1I	ACTGG	2 cut(s)	442, 491
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	186, 427
BseGI	GGATG	1 cut(s)	792
BseNI	ACTGG	2 cut(s)	442, 491
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	4 cut(s)	380, 383, 408, 502
Bsh1236I	CGCG	2 cut(s)	68, 288
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	5 cut(s)	280, 285, 338, 432, 477
BsiEI	CGRYCG	1 cut(s)	286
BsiSI	CCGG	5 cut(s)	188, 269, 282, 468, 500
BslFI	GGGAC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	5 cut(s)	280, 285, 338, 432, 477
Bsp1286I	GDGCHC	1 cut(s)	275
BspACI	CCGC	8 cut(s)	38, 68, 286, 291, 332, 335, 457, 516
BspANI	GGCC	5 cut(s)	280, 285, 338, 432, 477
BspFNI	CGCG	2 cut(s)	68, 288
BsrI	ACTGG	2 cut(s)	442, 491
BssECI	CCNNGG	2 cut(s)	186, 427
BssNI	GRCGYC	2 cut(s)	107, 309
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	4 cut(s)	116, 175, 297, 376
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	2 cut(s)	107, 309
BstBAI	YACGTR	2 cut(s)	33, 305
BstC8I	GCNNGC	3 cut(s)	320, 340, 786
BstF5I	GGATG	1 cut(s)	792
BstFNI	CGCG	2 cut(s)	68, 288
BstHHI	GCGC	2 cut(s)	121, 290
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 438
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	2 cut(s)	329, 403
BstSCI	CCNGG	4 cut(s)	186, 268, 280, 477
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	2 cut(s)	68, 288
BstV1I	GCAGC	4 cut(s)	380, 383, 408, 502
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	5 cut(s)	280, 285, 338, 432, 477
BtrI	CACGTC	2 cut(s)	389, 409
BtsCI	GGATG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	293, 435
Cac8I	GCNNGC	3 cut(s)	320, 340, 786
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	2 cut(s)	121, 290
Cfr13I	GGNCC	2 cut(s)	190, 279
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	3 cut(s)	261, 326, 400
CviQI	GTAC	1 cut(s)	344
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	3 cut(s)	283, 336, 430
EagI	CGGCCG	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EclXI	CGGCCG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	190
Eco52I	CGGCCG	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	264, 329, 403
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	260, 325, 399
FauI	CCCGC	2 cut(s)	61, 509
FauNDI	CATATG	1 cut(s)	651
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	8 cut(s)	286, 291, 333, 336, 394, 397, 422, 491
FokI	GGATG	1 cut(s)	779
Fsp4HI	GCNGC	8 cut(s)	286, 291, 333, 336, 394, 397, 422, 491
FspBI	CTAG	1 cut(s)	353
FspI	TGCGCA	1 cut(s)	120
GlaI	GCGC	2 cut(s)	120, 289
GluI	GCNGC	8 cut(s)	286, 291, 333, 336, 394, 397, 422, 491
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	5 cut(s)	280, 285, 338, 432, 477
HapII	CCGG	5 cut(s)	188, 269, 282, 468, 500
HhaI	GCGC	2 cut(s)	121, 290
Hin1I	GRCGYC	2 cut(s)	107, 309
Hin1II	CATG	3 cut(s)	264, 329, 403
Hin6I	GCGC	2 cut(s)	119, 288
HinP1I	GCGC	2 cut(s)	119, 288
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	3 cut(s)	265, 617, 665
HpaII	CCGG	5 cut(s)	188, 269, 282, 468, 500
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	3 cut(s)	83, 132, 144
Hpy188I	TCNGA	2 cut(s)	241, 361
Hpy8I	GTNNAC	3 cut(s)	83, 132, 144
Hpy99I	CGWCG	3 cut(s)	112, 390, 413
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	4 cut(s)	116, 175, 297, 376
HpyCH4IV	ACGT	9 cut(s)	25, 32, 85, 107, 134, 304, 309, 388, 408
HpyCH4V	TGCA	4 cut(s)	43, 235, 399, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 438
HpySE526I	ACGT	9 cut(s)	25, 32, 85, 107, 134, 304, 309, 388, 408
Hsp92I	GRCGYC	2 cut(s)	107, 309
Hsp92II	CATG	3 cut(s)	264, 329, 403
HspAI	GCGC	2 cut(s)	119, 288
LmnI	GCTCC	2 cut(s)	429, 553
Lsp1109I	GCAGC	4 cut(s)	380, 383, 408, 502
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	9 cut(s)	25, 32, 85, 107, 134, 304, 309, 388, 408
MaeIII	GTNAC	6 cut(s)	28, 71, 103, 305, 370, 404
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	9 cut(s)	452, 569, 624, 634, 709, 719, 738, 753, 762
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	6 cut(s)	203, 310, 437, 475, 534, 676
MseI	TTAA	6 cut(s)	137, 222, 414, 642, 708, 737
MspI	CCGG	5 cut(s)	188, 269, 282, 468, 500
MspR9I	CCNGG	4 cut(s)	188, 270, 282, 479
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	2 cut(s)	68, 288
MwoI	GCNNNNNNNGC	2 cut(s)	118, 438
NciI	CCSGG	3 cut(s)	188, 270, 282
NdeI	CATATG	1 cut(s)	651
NlaIII	CATG	3 cut(s)	264, 329, 403
NmeAIII	GCCGAG	2 cut(s)	256, 408
NmuCI	GTSAC	5 cut(s)	71, 103, 305, 370, 404
NsbI	TGCGCA	1 cut(s)	120
NspI	RCATGY	2 cut(s)	329, 403
PciI	ACATGT	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	265, 617, 665
PkrI	GCNGC	8 cut(s)	287, 292, 334, 337, 395, 398, 423, 492
PmaCI	CACGTG	1 cut(s)	305
PmlI	CACGTG	1 cut(s)	305
Ppu21I	YACGTR	2 cut(s)	33, 305
PscI	ACATGT	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	477
PspCI	CACGTG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	477
PspPI	GGNCC	2 cut(s)	190, 279
PstNI	CAGNNNCTG	1 cut(s)	701
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SaqAI	TTAA	6 cut(s)	137, 222, 414, 642, 708, 737
SatI	GCNGC	8 cut(s)	286, 291, 333, 336, 394, 397, 422, 491
Sau96I	GGNCC	2 cut(s)	190, 279
ScrFI	CCNGG	4 cut(s)	188, 270, 282, 479
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	9 cut(s)	452, 569, 624, 634, 709, 719, 738, 753, 762
SsiI	CCGC	8 cut(s)	38, 68, 286, 291, 332, 335, 457, 516
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	4 cut(s)	186, 268, 280, 477
TaaI	ACNGT	4 cut(s)	116, 175, 297, 376
TaiI	ACGT	9 cut(s)	28, 35, 88, 110, 137, 307, 312, 391, 411
TaqI	TCGA	1 cut(s)	59
TasI	AATT	9 cut(s)	452, 569, 624, 634, 709, 719, 738, 753, 762
TauI	GCSGC	4 cut(s)	288, 293, 335, 338
TfiI	GAWTC	3 cut(s)	265, 617, 665
Tru1I	TTAA	6 cut(s)	137, 222, 414, 642, 708, 737
Tru9I	TTAA	6 cut(s)	137, 222, 414, 642, 708, 737
TscAI	CASTG	2 cut(s)	300, 442
TseFI	GTSAC	5 cut(s)	71, 103, 305, 370, 404
TseI	GCWGC	4 cut(s)	393, 396, 421, 490
Tsp45I	GTSAC	5 cut(s)	71, 103, 305, 370, 404
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	2 cut(s)	300, 442
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	3 cut(s)	569, 719, 762
XceI	RCATGY	2 cut(s)	329, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	1 cut(s)	353
ZraI	GACGTC	2 cut(s)	108, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.