Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007375

Physical Location & Seq

Genomic Coordinates Forward (+)

26013574 .. 26015319

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATGAACATCGATCTTCAAAGACTTGACGAAATTCAGTTGGATAAATTAAGGCCTGAATTCAGAGCTGGGCTAGATGCATTGACAAAGTTTGTTTTTGAAAGAACAAGGCCCAAGCAGGTTGGGGCAACAATGATGACAGGTCCAGTTCTAGTTGGCATCACAGAGTCTTATCTTGATGCTCTTAATAAAGGCGCGGTGCCTACCATATCCTCTTCATGGCAGAGTGTTGAAGAAGATGGTTGCCGAAGAGCATATGATTCTGCTCTTGAGGTGTATAAGTCTGCTTTTCAGCGTCCGAAAGATCCCGAAGAAGCTGCATTCAGGGAAGCACATGAAAAGGCAGTTCATAGATCATTGGCTGCTTTCAATGATGGTGCTGTAGGAGTTGGTCCACCAAGGAAGAAGTATGAGGCGGAGCTCCACAAAAAGTTGAAAAAGGAGTTTGAGGATTGTAAAAAGAATGCATATATGGAGGCAGAGTTGCACTGTTCAAATGCCATACAAATCATGGAAAGGAAGCTGAGAGCAGCATGCCATGCTAGTGATGCTAATATTGATAATGTTGGGAAGGTTCTTGATGGTCTTCTATCCGACTATGAAGCAACAAGTCACGGTCCAGCAAAATGGCAGAAACTGACCATGTTCTTACAGAAGAGTTTTGAAGGGCCAATATTTGACCTCGTCAAGAGACTGATTGACCAAGCTGGATCAGAGAAGAATACCCTCATGTTGAGGTGCCGCTCATTAGAAGATAAGTTGGGGTTACTTAACAAGCAGCTGGAGTCTAGTGAGAAGTCTAAGTCTGAATACCTTAAGCGTTATGAGGATGCTATCAATGACAAGAAGAAGCTAGTTGATGAATACATGGGCCGCATAAATAACTTGCAGAGTAATCACAGTTCATTGGGTGAGAGATGTTCTGGCTTGGTTAAAACATTGGATTCTGCAAAGCAGGAATCCTTAGAGTGGAAAAGAAAATATGAACATGTCTTATCAAGGCAGAAGGCTGAGGAAGATCGATCAATGGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0012505 GO:0015629 GO:0017076 GO:0019001 GO:0019221 GO:0023052 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034097 GO:0034340 GO:0034341 GO:0034504 GO:0034612 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0060333 GO:0060337 GO:0065007 GO:0070013 GO:0070555 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071347 GO:0071356 GO:0071357 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

346

Amino Acids

39.29

Weight (kDa)

7.61

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBP_C	PF02841	42 - 340	5.1e-31	Guanylate-binding protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46070
fragaria_vesca	FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471
malus_domestica	MD05G1309600.v1.1 MD10G1288200.v1.1
prunus_persica	Prupe.4G053400_v2.0.a1
pyrus_communis	pycom05g28600 pycom10g24130 pycom10g24140
rosa_chinensis	RchiOBHm_Chr5g0009341
rosa_laevigata	RLG00000031653
rosa_multiflora	Rmu_sc0002711.1_g000023 Rmu_sc0009480.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066750 Rroxscaffold_1G00067450
rosa_rugosa	Rorug04G0441800
rosa_samantha	Rh5AG072700 Rh5BG069000 Rh5CG081600 Rh5DG069300
rosa_wichuraiana	Rw5G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	2 cut(s)	199, 738
AccBSI	CCGCTC	1 cut(s)	744
AccII	CGCG	1 cut(s)	197
AciI	CCGC	4 cut(s)	197, 416, 742, 874
AclWI	GGATC	2 cut(s)	299, 718
AcsI	RAATTY	2 cut(s)	33, 59
AfiI	CCNNNNNNNGG	2 cut(s)	219, 969
AflII	CTTAAG	1 cut(s)	815
AflIII	ACRYGT	1 cut(s)	988
AgsI	TTSAA	7 cut(s)	20, 101, 233, 370, 436, 495, 665
AluBI	AGCT	7 cut(s)	68, 317, 421, 523, 707, 781, 853
AluI	AGCT	7 cut(s)	68, 317, 421, 523, 707, 781, 853
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	299, 718
AlwNI	CAGNNNCTG	1 cut(s)	637
AoxI	GGCC	4 cut(s)	53, 110, 668, 871
ApeKI	GCWGC	4 cut(s)	317, 362, 530, 778
ApoI	RAATTY	2 cut(s)	33, 59
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	6 cut(s)	111, 143, 392, 617, 668, 871
AsuHPI	GGTGA	1 cut(s)	923
AvaII	GGWCC	3 cut(s)	143, 392, 617
BanI	GGYRCC	2 cut(s)	199, 738
BanII	GRGCYC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	423
BbvCI	CCTCAGC	1 cut(s)	1011
BbvI	GCAGC	4 cut(s)	304, 349, 542, 790
BccI	CCATC	3 cut(s)	233, 368, 575
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	5 cut(s)	74, 152, 543, 789, 854
BfmI	CTRYAG	1 cut(s)	381
BfrI	CTTAAG	1 cut(s)	815
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	6 cut(s)	318, 363, 531, 742, 779, 874
BlsI	GCNGC	6 cut(s)	319, 364, 532, 743, 780, 875
Bme18I	GGWCC	3 cut(s)	143, 392, 617
BmgT120I	GGNCC	6 cut(s)	111, 143, 392, 617, 668, 871
BmiI	GGNNCC	2 cut(s)	201, 740
BmsI	GCATC	5 cut(s)	67, 168, 169, 538, 820
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	803
Bpu10I	CCTNAGC	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	290
Bsa29I	ATCGAT	2 cut(s)	12, 1021
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 969
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	8
BseCI	ATCGAT	2 cut(s)	12, 1021
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	1 cut(s)	835
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	219, 969
BseMII	CTCAG	2 cut(s)	515, 1002
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	304, 349, 542, 790
BseYI	CCCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	4 cut(s)	55, 112, 670, 873
BshNI	GGYRCC	2 cut(s)	199, 738
BshVI	ATCGAT	2 cut(s)	12, 1021
BsiHKAI	GWGCWC	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	219, 969
BsmAI	GTCTC	1 cut(s)	685
BsmI	GAATGC	2 cut(s)	320, 469
BsnI	GGCC	4 cut(s)	55, 112, 670, 873
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
BspACI	CCGC	4 cut(s)	197, 416, 742, 874
BspANI	GGCC	4 cut(s)	55, 112, 670, 873
BspCNI	CTCAG	2 cut(s)	516, 1003
BspDI	ATCGAT	2 cut(s)	12, 1021
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	201, 740
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	299, 718
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	2 cut(s)	199, 738
BspTI	CTTAAG	1 cut(s)	815
BsrBI	CCGCTC	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	3 cut(s)	491, 617, 902
Bst6I	CTCTTC	3 cut(s)	220, 244, 650
BstAFI	CTTAAG	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	4 cut(s)	524, 801, 964, 1011
BstF5I	GGATG	1 cut(s)	835
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	6 cut(s)	16, 307, 356, 713, 1021, 1025
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 548
BstNSI	RCATGY	2 cut(s)	537, 992
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	4 cut(s)	304, 349, 542, 790
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	304
Bsu15I	ATCGAT	2 cut(s)	12, 1021
BsuRI	GGCC	4 cut(s)	55, 112, 670, 873
BsuTUI	ATCGAT	2 cut(s)	12, 1021
BtsCI	GGATG	1 cut(s)	835
BtsIMutI	CAGTG	1 cut(s)	487
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	535
CaiI	CAGNNNCTG	1 cut(s)	637
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	6 cut(s)	111, 143, 392, 617, 668, 871
ClaI	ATCGAT	2 cut(s)	12, 1021
CseI	GACGC	1 cut(s)	284
CviAII	CATG	9 cut(s)	219, 335, 511, 534, 539, 643, 730, 868, 989
DdeI	CTNAG	4 cut(s)	524, 801, 964, 1011
DpnI	GATC	6 cut(s)	15, 306, 355, 712, 1020, 1024
DpnII	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
Eam1104I	CTCTTC	3 cut(s)	220, 244, 650
EarI	CTCTTC	3 cut(s)	220, 244, 650
EciI	GGCGGA	1 cut(s)	431
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	398
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	3 cut(s)	143, 392, 617
Eco53kI	GAGCTC	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	2 cut(s)	82, 469
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	9 cut(s)	222, 338, 514, 537, 542, 646, 733, 871, 992
FatI	CATG	9 cut(s)	218, 334, 510, 533, 538, 642, 729, 867, 988
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	6 cut(s)	318, 363, 531, 742, 779, 874
FokI	GGATG	1 cut(s)	842
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	6 cut(s)	318, 363, 531, 742, 779, 874
FspBI	CTAG	5 cut(s)	74, 152, 543, 789, 854
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	6 cut(s)	318, 363, 531, 742, 779, 874
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	4 cut(s)	55, 112, 670, 873
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	9 cut(s)	222, 338, 514, 537, 542, 646, 733, 871, 992
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	5 cut(s)	167, 260, 785, 944, 959
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	6 cut(s)	65, 300, 595, 715, 808, 1037
Hpy188III	TCNNGA	5 cut(s)	176, 269, 308, 578, 688
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	565, 659, 1000
HpyCH4III	ACNGT	3 cut(s)	491, 617, 902
HpyCH4V	TGCA	6 cut(s)	80, 320, 467, 487, 889, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 548
HpyF3I	CTNAG	4 cut(s)	524, 801, 964, 1011
Hsp92II	CATG	9 cut(s)	222, 338, 514, 537, 542, 646, 733, 871, 992
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	418, 426
Lsp1109I	GCAGC	4 cut(s)	304, 349, 542, 790
LweI	GCATC	5 cut(s)	67, 168, 169, 538, 820
MaeI	CTAG	5 cut(s)	74, 152, 543, 789, 854
MaeIII	GTNAC	2 cut(s)	611, 765
MalI	GATC	6 cut(s)	15, 306, 355, 712, 1020, 1024
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	3 cut(s)	33, 47, 59
MlyI	GAGTC	2 cut(s)	176, 794
MmeI	TCCRAC	2 cut(s)	21, 618
Mph1103I	ATGCAT	2 cut(s)	82, 469
MseI	TTAA	5 cut(s)	50, 186, 771, 816, 933
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	781
MspCI	CTTAAG	1 cut(s)	815
Mva1269I	GAATGC	2 cut(s)	320, 469
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	539, 548
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
NlaIII	CATG	9 cut(s)	222, 338, 514, 537, 542, 646, 733, 871, 992
NlaIV	GGNNCC	2 cut(s)	201, 740
NmuCI	GTSAC	1 cut(s)	611
NsiI	ATGCAT	2 cut(s)	82, 469
NspI	RCATGY	2 cut(s)	537, 992
PaeI	GCATGC	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	55
PciI	ACATGT	1 cut(s)	988
PciSI	GCTCTTC	1 cut(s)	244
PctI	GAATGC	2 cut(s)	320, 469
PfeI	GAWTC	3 cut(s)	260, 944, 959
PflFI	GACNNNGTC	1 cut(s)	683
PkrI	GCNGC	6 cut(s)	319, 364, 532, 743, 780, 875
PleI	GAGTC	2 cut(s)	175, 793
PpsI	GAGTC	2 cut(s)	175, 793
PscI	ACATGT	1 cut(s)	988
Psp124BI	GAGCTC	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	201, 740
PspPI	GGNCC	6 cut(s)	111, 143, 392, 617, 668, 871
PsrI	GAACNNNNNNTAC	2 cut(s)	886, 918
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	781
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	50, 186, 771, 816, 933
SatI	GCNGC	6 cut(s)	318, 363, 531, 742, 779, 874
Sau3AI	GATC	6 cut(s)	13, 304, 353, 710, 1018, 1022
Sau96I	GGNCC	6 cut(s)	111, 143, 392, 617, 668, 871
SchI	GAGTC	2 cut(s)	176, 794
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	5 cut(s)	67, 168, 169, 538, 820
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	3 cut(s)	143, 392, 617
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	269, 815
SmoI	CTYRAG	2 cut(s)	269, 815
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	3 cut(s)	33, 47, 59
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	4 cut(s)	197, 416, 742, 874
SspI	AATATT	2 cut(s)	556, 675
SspMI	CTAG	5 cut(s)	74, 152, 543, 789, 854
SstI	GAGCTC	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	3 cut(s)	491, 617, 902
TaqI	TCGA	2 cut(s)	12, 1021
TasI	AATT	3 cut(s)	33, 47, 59
TauI	GCSGC	2 cut(s)	744, 876
TfiI	GAWTC	3 cut(s)	260, 944, 959
Tru1I	TTAA	5 cut(s)	50, 186, 771, 816, 933
Tru9I	TTAA	5 cut(s)	50, 186, 771, 816, 933
TscAI	CASTG	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	4 cut(s)	317, 362, 530, 778
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	8 cut(s)	20, 207, 338, 351, 615, 876, 894, 999
TspRI	CASTG	1 cut(s)	494
Tth111I	GACNNNGTC	1 cut(s)	683
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	3 cut(s)	143, 392, 617
XapI	RAATTY	2 cut(s)	33, 59
XceI	RCATGY	2 cut(s)	537, 992
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	5 cut(s)	74, 152, 543, 789, 854
Zsp2I	ATGCAT	2 cut(s)	82, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.