Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007375

Physical Location & Seq

Genomic Coordinates Reverse (-)

7034091 .. 7041224

Gene Structure 7134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3210 bp

ATGTTTCGGATGTTCAGAGGAGGCAACGCCTCCGATGCCTCGCCGGAATCTTCCTCCTCTCCGTCGTCGTCGTCCTCGCCTTCGCCGCCGCAGCCGTCGCGGCCGGTGACCGGGCCGGCGAGGCCGATTCGACTCGTCTACGCCGACGAGAAAGGGAGGTTTCGGATGGATCCGGAAGCCGTCGCGGTGTTGCAGCTTGTTAAGGAGCCGATTGGTGTCGTCTCCGTCTGCGGTCGCGCTCGCCAGGGCAAGAGCTATATTCTCAACCAGATTCTTGGAAGGAGTAGTGGATTTCAAGTAGCATCAACTCATCGCCCATGTACTAAAGGACTATGGATGTGGAGTGCACCCTTGAAGAGAACTGCCCTTGATGGAACTGAATACAATCTCTTATTGTTGGATACTGAAGGAATAGATGCTTATGATCAGACAGGAACGTACAGCACACAAATATTTTCCTTGGCTGTTCTCTTATCCAGCATGTTCATTTATAATCAGATGGGTGGTATAGATGAAGCTTCACTTGATCGTCTTGCTCTGGTCACCCAAGTGACCAAACATATCCGTGTTAAAGCCTCTGGAGGAAGAACCACAGCCTCTGAAATCGGGCAGTTCTCCCCAGTTTTTGTCTGGCTTCTAAGGGACTTCTATCTCGAATTAGTAGATAATGGTAGAAAGATAACACCCCGTGAGTATCTAGAGACTGCTTTGAGGCCTTTTGAAGGAAAACAAGATGTAGCTGCCAAAAATGAGATACGGGACTCCATTAGAGCTCTATTTCCAGATAGAGAATGCTTCACCCTTTTGCGGCCTGTGGACAAGGAAGAGGAGCTCCGGAGACTCGATCAAATTCAGTTGAACAAGTTAAGGCCTGAATTTAAGTCAGGGCTGGATGCTTTGACAAGGTTTGTTTTTGAACGAACGAGGCCCAAGCAAGTTGGGGCCACTATGATGACAGGACCAGTTCTAGTTGGTATCCTTCAGTCCTATCTTGATGCTCTTAATAATGGTGCAGTGCCTACCATCTCATCTTCATGGCAGAGTGTCGAAGAAGCAGAGTGCCGAAGAGCATATGATTCTGCTGTTGATGCTTATAGGTCTGCTTTTGACCGTTCAAAGTTGCCTGAAGAAGCTGCACTGAGGGAAGCTCATGAAGAGGCAGTCCAAAAATCACTGGCTGCTTTTAACGATTGTGCTGTAGGGGGTGGTCCAACAAGGAAAAAATATGAAGGGAATCTTCACAAACAGCTCAAAAAGGAATTTGAGGATTATAAGAAGAATGCATATATGGAGGCAGAGTTGCAATGTATAAATGCTATACAAAGGATGGAAGGGAAGCTGAGGAGCGCTTGCCATGCTAGTGATGCTAATATTGATAATGTTCTGAAGATTCTTGGTGACCTTATGTCTGAGTATGAAAAGGCAAGTCGGGGTCCACTAAAATGGCAGCAACTGGCTTTCTTTTTAAGAAAGAGTTTGGAAGGTCCAATTCTTGATCTCATCATGAGGCAAATCAACAAAGTTGAATCAGAGAATGGCACCTTGAGGTTGAGATCCCGTGCCATGCAAGATGAGTTGGGTTTACTAAAAAAGCGGGTAGAGGAAAGCAAGCAGTCTAAGATGGAGTACGTCAAACGCTACGAGGACGCTCTCAATGACAAGAACAAGCTAAATGATGAATACAATGTCCGTTTTAACAACTTGCAAGGAAATAATACTTCTCTGCGAGATCAGTGTGCTAGCTTGCGTAAGAGTTTGGATTCTGTAAAAGCAGAAGCAGGAGAATGGCAAAGAAAATATGAGCAGGTTCTCTCCAAGCAGAAGGCTGAGGAAGATCAAGCTGGTTCTGAAATTGCGGTTCTCAAGTCTCGATGCAGTGCTGGTGAAGCAAGGCTGGCTGCTGCAAAGGAACAAGCTCAGTCTGCTCAAGAGGAGGCAGAGGACTGGAAACGCAAATATGACATTGCTTTTAGAGAGGCAAAAGCTGCTCTAGAGAAGGCAGCAATTGTCCAAGAACGTTCCAGTAAGGAAACACAAAGGAGAGAAGATGCTTTGAGGGAAGAATTCACAAGTAGTTTGGCTGCGAAGGAGGAAGACATAAAGGAAAAGACAGCAAAGATTGAATATGCTGAGCAGTGCTTAACGACTCTAAAAATGGAACTAAAGGCTGCCAGGTCCAAAATTGATAGTTACGATGCTGAAATATCATCAGGAAAGCTTGAAATCAAGGAGCTGAGTAGAAAATTAGAAGCTGCAAATGACAAGGCCAATTCATTTGAAAGAGAAAAGAAGATACTGGAGCAGGAGAAGATCCATCTAAAGCAGACATATGAAACTGAGATCAAAAGATTGGATGAAGTCCAAGAAAGGTGTAAAATTGCTGAAAAAGAAGCCACTAGAGCAACTGATATTGCTGATAAAGCACGAGCTCAAGCAGACATAGCTCAAAAGGAAAAGGGGGAGATGCAGAGGCTGGCAATAGAAAGGTTGGCTCAAATTGAGAGGGCTGAGAGGCATATTGAAAGTCTACAGAGGGAGAAAAGAGACTTGGAAGTTGAGTTGGACGGAATCCGTGCATCAGAAAGGGGAGCTCATCACAAAATTTCTCTACTGGAGGCAAGAGTTGAAGAAAGGGAGAAAGAAATAGAATCATTATTGGAGTCGAACAATGAGCAGAGAACTAGTACAGTTCAAGTCCTTCAAGGTCTTCTGGACAGTGAACGTGCAGCACATGCAGACGCAAACAATAGGGCAGAAGCCCTCTCTCATCAGCTACAATCTGCACAAGCAAAACTCGATAAACTCCAGCAAGAATTGACTTCTGTTCGCCTGAATGAAACTGCATTGGATAGTAAGCTTAGGACTGCTTCACATGGGAAGCGTTCAAGGGTAGATGACTATGACATGGACGTGGACTCTGTTCAAGACGGGGAATTGAGTGACCGGATCTTAAGAGTAAATAAGAAGTCTAGGAGTACTACTAGCCCTCTGAAGCATGCGCAAACAGAAGATGGTGGTTCAGTATTCCGGGGAGATGAGGATAGCCGCAGTCAGCAAACCAATCCAGAAGATTACACAAAGTTCACAGTCCAGAAACTGAAGCAAGAGCTAACAAAGCATAACTTTGGTGCTGAGCTGCTGCAGTTAAGGAACCCCAACAAAAGGGAGATCCTCACGCTATATGAGAAGTGCATTCTTCAAAAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0012505 GO:0015629 GO:0017076 GO:0019001 GO:0019221 GO:0023052 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034097 GO:0034340 GO:0034341 GO:0034504 GO:0034612 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0060333 GO:0060337 GO:0065007 GO:0070013 GO:0070555 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071347 GO:0071356 GO:0071357 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

1069

Amino Acids

121.04

Weight (kDa)

7.22

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBP	PF02263	52 - 308	4.2e-62	Guanylate-binding protein, N-terminal domain
GBP_C	PF02841	314 - 647	1.5e-30	Guanylate-binding protein, C-terminal domain
Tropomyosin	PF00261	582 - 790	1e-06	Tropomyosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46070
fragaria_vesca	FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471
malus_domestica	MD05G1309600.v1.1 MD10G1288200.v1.1
prunus_persica	Prupe.4G053400_v2.0.a1
pyrus_communis	pycom05g28600 pycom10g24130 pycom10g24140
rosa_chinensis	RchiOBHm_Chr5g0009341
rosa_laevigata	RLG00000031653
rosa_multiflora	Rmu_sc0002711.1_g000023 Rmu_sc0009480.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066750 Rroxscaffold_1G00067450
rosa_rugosa	Rorug04G0441800
rosa_samantha	Rh5AG072700 Rh5BG069000 Rh5CG081600 Rh5DG069300
rosa_wichuraiana	Rw5G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	492, 1272
Acc16I	TGCGCA	1 cut(s)	3000
Acc36I	ACCTGC	1 cut(s)	1795
AccB1I	GGYRCC	1 cut(s)	1538
AccI	GTMKAC	2 cut(s)	138, 2527
AccII	CGCG	3 cut(s)	100, 185, 237
AccIII	TCCGGA	2 cut(s)	172, 834
AciI	CCGC	9 cut(s)	86, 89, 100, 185, 231, 808, 1594, 1856, 3046
AclI	AACGTT	1 cut(s)	2017
AclWI	GGATC	6 cut(s)	164, 177, 1548, 2305, 2954, 3163
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	5 cut(s)	849, 875, 1259, 2063, 2601
AcuI	CTGAAG	6 cut(s)	426, 965, 1146, 1406, 3011, 3119
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	5 cut(s)	322, 440, 1628, 2686, 2977
AfeI	AGCGCT	1 cut(s)	1348
AfiI	CCNNNNNNNGG	4 cut(s)	110, 722, 807, 3162
AflII	CTTAAG	1 cut(s)	2950
AhdI	GACNNNNNGTC	1 cut(s)	1405
AhlI	ACTAGT	1 cut(s)	2681
AjiI	CACGTC	1 cut(s)	2911
AjnI	CCWGG	2 cut(s)	243, 2171
AjuI	GAANNNNNNNTTGG	2 cut(s)	2531, 2563
AleI	CACNNNNGTG	1 cut(s)	548
Alw21I	GWGCWC	5 cut(s)	349, 775, 834, 2431, 2593
Alw26I	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	6 cut(s)	164, 177, 1548, 2305, 2954, 3163
AlwNI	CAGNNNCTG	4 cut(s)	599, 1453, 2473, 3097
Aor13HI	TCCGGA	2 cut(s)	172, 834
Aor51HI	AGCGCT	1 cut(s)	1348
AoxI	GGCC	9 cut(s)	101, 113, 122, 713, 809, 869, 926, 942, 2265
ApaLI	GTGCAC	1 cut(s)	345
ApoI	RAATTY	5 cut(s)	849, 875, 1259, 2063, 2601
AspLEI	GCGC	3 cut(s)	239, 1349, 3001
AspS9I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
AsuC2I	CCSGG	2 cut(s)	112, 3029
AsuHPI	GGTGA	5 cut(s)	118, 535, 790, 1409, 1895
AsuNHI	GCTAGC	1 cut(s)	1739
AvaII	GGWCC	5 cut(s)	959, 1208, 1433, 1484, 2175
BaeGI	GKGCMC	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	1538
BanII	GRGCYC	4 cut(s)	775, 834, 2431, 2593
BauI	CACGAG	1 cut(s)	2424
BbsI	GAAGAC	2 cut(s)	2100, 2699
Bbv12I	GWGCWC	5 cut(s)	349, 775, 834, 2431, 2593
BbvCI	CCTCAGC	2 cut(s)	1340, 1827
BccI	CCATC	8 cut(s)	160, 365, 493, 1031, 1321, 1615, 2322, 3005
BceAI	ACGGC	2 cut(s)	79, 164
BciT130I	CCWGG	2 cut(s)	245, 2173
BciVI	GTATCC	2 cut(s)	394, 986
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	2 cut(s)	112, 3029
BcoDI	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
BcuI	ACTAGT	1 cut(s)	2681
BfaI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
BfmI	CTRYAG	3 cut(s)	1197, 2528, 3140
BfoI	RGCGCY	1 cut(s)	1350
BfrI	CTTAAG	1 cut(s)	2950
BfuAI	ACCTGC	1 cut(s)	1795
BfuI	GTATCC	2 cut(s)	394, 986
BglI	GCCNNNNNGGC	2 cut(s)	100, 121
BlpI	GCTNAGC	2 cut(s)	2130, 3132
BmcAI	AGTACT	1 cut(s)	2977
Bme1390I	CCNGG	4 cut(s)	112, 245, 2173, 3029
Bme18I	GGWCC	5 cut(s)	959, 1208, 1433, 1484, 2175
BmeRI	GACNNNNNGTC	1 cut(s)	1405
BmgBI	CACGTC	1 cut(s)	2911
BmgT120I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
BmiI	GGNNCC	6 cut(s)	171, 207, 943, 1434, 1540, 3152
BmrFI	CCNGG	4 cut(s)	112, 245, 2173, 3029
BmrI	ACTGGG	1 cut(s)	614
BmtI	GCTAGC	1 cut(s)	1743
BmuI	ACTGGG	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	2100, 2699
BplI	GAGNNNNNCTC	2 cut(s)	1132, 1164
BpmI	CTGGAG	4 cut(s)	600, 2318, 2633, 2789
Bpu10I	CCTNAGC	3 cut(s)	1340, 1827, 2858
Bpu1102I	GCTNAGC	2 cut(s)	2130, 3132
BpuEI	CTTGAG	4 cut(s)	1564, 1847, 1911, 2415
BpuMI	CCSGG	2 cut(s)	112, 3029
BsaJI	CCNNGG	3 cut(s)	244, 459, 3028
BsaWI	WCCGGW	3 cut(s)	172, 834, 2943
BsaXI	ACNNNNNCTCC	2 cut(s)	1283, 1313
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 722, 807, 3162
Bse118I	RCCGGY	2 cut(s)	103, 115
Bse1I	ACTGG	8 cut(s)	620, 962, 1179, 1458, 1949, 2022, 2301, 2616
Bse3DI	GCAATG	2 cut(s)	1310, 1962
BseAI	TCCGGA	2 cut(s)	172, 834
BseBI	CCWGG	2 cut(s)	245, 2173
BseDI	CCNNGG	3 cut(s)	244, 459, 3028
BseGI	GGATG	6 cut(s)	15, 171, 342, 898, 1332, 2359
BseLI	CCNNNNNNNGG	4 cut(s)	110, 722, 807, 3162
BseMI	GCAATG	2 cut(s)	1310, 1962
BseNI	ACTGG	8 cut(s)	620, 962, 1179, 1458, 1949, 2022, 2301, 2616
BseRI	GAGGAG	5 cut(s)	33, 46, 842, 1357, 1946
BseSI	GKGCMC	1 cut(s)	349
BseX3I	CGGCCG	1 cut(s)	101
BsgI	GTGCAG	4 cut(s)	1032, 1119, 2745, 2766
Bsh1236I	CGCG	3 cut(s)	100, 185, 237
Bsh1285I	CGRYCG	2 cut(s)	104, 235
BshFI	GGCC	9 cut(s)	103, 115, 124, 715, 811, 871, 928, 944, 2267
BshNI	GGYRCC	1 cut(s)	1538
BsiEI	CGRYCG	2 cut(s)	104, 235
BsiHKAI	GWGCWC	5 cut(s)	349, 775, 834, 2431, 2593
BsiSI	CCGG	8 cut(s)	44, 104, 111, 116, 173, 835, 2944, 3028
BslFI	GGGAC	2 cut(s)	656, 773
BslI	CCNNNNNNNGG	4 cut(s)	110, 722, 807, 3162
BsmAI	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	656, 773
BsmI	GAATGC	3 cut(s)	797, 1285, 3192
BsnI	GGCC	9 cut(s)	103, 115, 124, 715, 811, 871, 928, 944, 2267
Bsp1286I	GDGCHC	5 cut(s)	349, 775, 834, 2431, 2593
Bsp13I	TCCGGA	2 cut(s)	172, 834
Bsp1720I	GCTNAGC	2 cut(s)	2130, 3132
BspACI	CCGC	9 cut(s)	86, 89, 100, 185, 231, 808, 1594, 1856, 3046
BspANI	GGCC	9 cut(s)	103, 115, 124, 715, 811, 871, 928, 944, 2267
BspEI	TCCGGA	2 cut(s)	172, 834
BspFNI	CGCG	3 cut(s)	100, 185, 237
BspHI	TCATGA	2 cut(s)	1150, 1503
BspLI	GGNNCC	6 cut(s)	171, 207, 943, 1434, 1540, 3152
BspMAI	CTGCAG	1 cut(s)	3144
BspMI	ACCTGC	1 cut(s)	1795
BspOI	GCTAGC	1 cut(s)	1743
BspPI	GGATC	6 cut(s)	164, 177, 1548, 2305, 2954, 3163
BspQI	GCTCTTC	1 cut(s)	1060
BspT107I	GGYRCC	1 cut(s)	1538
BspTI	CTTAAG	1 cut(s)	2950
BsrDI	GCAATG	2 cut(s)	1310, 1962
BsrFI	RCCGGY	2 cut(s)	103, 115
BsrI	ACTGG	8 cut(s)	620, 962, 1179, 1458, 1949, 2022, 2301, 2616
BssAI	RCCGGY	2 cut(s)	103, 115
BssECI	CCNNGG	3 cut(s)	244, 459, 3028
BssSI	CACGAG	1 cut(s)	2424
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	2424
Bst2UI	CCWGG	2 cut(s)	245, 2173
Bst4CI	ACNGT	4 cut(s)	1112, 2689, 2717, 3088
Bst6I	CTCTTC	4 cut(s)	350, 819, 1060, 1149
BstAFI	CTTAAG	1 cut(s)	2950
BstAPI	GCANNNNNTGC	2 cut(s)	1985, 2732
BstC8I	GCNNGC	9 cut(s)	117, 241, 1351, 1610, 1741, 1745, 1896, 2475, 2997
BstEII	GGTNACC	3 cut(s)	106, 541, 1397
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	6 cut(s)	15, 171, 342, 898, 1332, 2359
BstFNI	CGCG	3 cut(s)	100, 185, 237
BstH2I	RGCGCY	1 cut(s)	1350
BstHHI	GCGC	3 cut(s)	239, 1349, 3001
BstMAI	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
BstMCI	CGRYCG	2 cut(s)	104, 235
BstNI	CCWGG	2 cut(s)	245, 2173
BstNSI	RCATGY	3 cut(s)	484, 2735, 2999
BstPI	GGTNACC	3 cut(s)	106, 541, 1397
BstSCI	CCNGG	4 cut(s)	110, 243, 2171, 3027
BstSFI	CTRYAG	3 cut(s)	1197, 2528, 3140
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	3 cut(s)	100, 185, 237
BstV2I	GAAGAC	2 cut(s)	2100, 2699
BstX2I	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
BstXI	CCANNNNNNTGG	2 cut(s)	275, 1443
BstYI	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
BstZI	CGGCCG	1 cut(s)	101
BsuI	GTATCC	2 cut(s)	394, 986
BsuRI	GGCC	9 cut(s)	103, 115, 124, 715, 811, 871, 928, 944, 2267
BtgZI	GCGATG	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	2911
BtsCI	GGATG	6 cut(s)	15, 171, 342, 898, 1332, 2359
BtsI	GCAGTG	3 cut(s)	1020, 1882, 2141
BtsIMutI	CAGTG	7 cut(s)	1020, 1136, 1172, 1739, 1882, 2141, 2722
BveI	ACCTGC	1 cut(s)	1795
Cac8I	GCNNGC	9 cut(s)	117, 241, 1351, 1610, 1741, 1745, 1896, 2475, 2997
CaiI	CAGNNNCTG	4 cut(s)	599, 1453, 2473, 3097
CciI	TCATGA	2 cut(s)	1150, 1503
CfoI	GCGC	3 cut(s)	239, 1349, 3001
Cfr10I	RCCGGY	2 cut(s)	103, 115
Cfr13I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
CseI	GACGC	2 cut(s)	1655, 2747
Csp6I	GTAC	5 cut(s)	321, 439, 1627, 2685, 2976
CviQI	GTAC	5 cut(s)	321, 439, 1627, 2685, 2976
DraIII	CACNNNGTG	1 cut(s)	689
DriI	GACNNNNNGTC	1 cut(s)	1405
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
Eam1104I	CTCTTC	4 cut(s)	350, 819, 1060, 1149
Eam1105I	GACNNNNNGTC	1 cut(s)	1405
EarI	CTCTTC	4 cut(s)	350, 819, 1060, 1149
Ecl136II	GAGCTC	4 cut(s)	773, 832, 2429, 2591
EclXI	CGGCCG	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	2 cut(s)	715, 871
Eco24I	GRGCYC	4 cut(s)	775, 834, 2431, 2593
Eco47I	GGWCC	5 cut(s)	959, 1208, 1433, 1484, 2175
Eco47III	AGCGCT	1 cut(s)	1348
Eco52I	CGGCCG	1 cut(s)	101
Eco53kI	GAGCTC	4 cut(s)	773, 832, 2429, 2591
Eco57I	CTGAAG	6 cut(s)	426, 965, 1146, 1406, 3011, 3119
Eco91I	GGTNACC	3 cut(s)	106, 541, 1397
EcoICRI	GAGCTC	4 cut(s)	773, 832, 2429, 2591
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoO65I	GGTNACC	3 cut(s)	106, 541, 1397
EcoRI	GAATTC	1 cut(s)	2063
EcoRII	CCWGG	2 cut(s)	243, 2171
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	1285
EcoT38I	GRGCYC	4 cut(s)	775, 834, 2431, 2593
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	226
FalI	AAGNNNNNCTT	6 cut(s)	507, 539, 1221, 1253, 3107, 3139
FaqI	GGGAC	2 cut(s)	656, 773
FauI	CCCGC	1 cut(s)	1587
FauNDI	CATATG	2 cut(s)	1072, 2329
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	2 cut(s)	138, 2527
FokI	GGATG	6 cut(s)	22, 178, 349, 905, 1339, 2366
FriOI	GRGCYC	4 cut(s)	775, 834, 2431, 2593
FspBI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
FspI	TGCGCA	1 cut(s)	3000
GlaI	GCGC	3 cut(s)	238, 1348, 3000
GsuI	CTGGAG	4 cut(s)	600, 2318, 2633, 2789
HaeII	RGCGCY	1 cut(s)	1350
HaeIII	GGCC	9 cut(s)	103, 115, 124, 715, 811, 871, 928, 944, 2267
HapII	CCGG	8 cut(s)	44, 104, 111, 116, 173, 835, 2944, 3028
HgaI	GACGC	2 cut(s)	1655, 2747
HhaI	GCGC	3 cut(s)	239, 1349, 3001
Hin6I	GCGC	3 cut(s)	237, 1347, 2999
HinP1I	GCGC	3 cut(s)	237, 1347, 2999
HindIII	AAGCTT	3 cut(s)	516, 2216, 2855
HpaII	CCGG	8 cut(s)	44, 104, 111, 116, 173, 835, 2944, 3028
HphI	GGTGA	5 cut(s)	118, 535, 790, 1409, 1895
Hpy166II	GTNNAC	9 cut(s)	139, 347, 817, 1436, 1583, 2528, 2720, 2914, 3084
Hpy8I	GTNNAC	9 cut(s)	139, 347, 817, 1436, 1583, 2528, 2720, 2914, 3084
Hpy99I	CGWCG	6 cut(s)	67, 70, 73, 100, 149, 185
HpyCH4III	ACNGT	4 cut(s)	1112, 2689, 2717, 3088
HpyCH4IV	ACGT	5 cut(s)	437, 1629, 2017, 2722, 2910
HpySE526I	ACGT	5 cut(s)	437, 1629, 2017, 2722, 2910
HspAI	GCGC	3 cut(s)	237, 1347, 2999
Kpn2I	TCCGGA	2 cut(s)	172, 834
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	424
LguI	GCTCTTC	1 cut(s)	1060
LmnI	GCTCC	7 cut(s)	205, 829, 837, 1344, 2230, 2299, 2588
MaeI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
MaeII	ACGT	5 cut(s)	437, 1629, 2017, 2722, 2910
MaeIII	GTNAC	6 cut(s)	106, 541, 550, 1397, 2189, 2939
MfeI	CAATTG	1 cut(s)	2004
MflI	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
MhlI	GDGCHC	5 cut(s)	349, 775, 834, 2431, 2593
MlyI	GAGTC	6 cut(s)	126, 755, 834, 2140, 2669, 2909
MmeI	TCCRAC	3 cut(s)	378, 1235, 2541
Mph1103I	ATGCAT	1 cut(s)	1285
MroI	TCCGGA	2 cut(s)	172, 834
MroNI	GCCGGC	1 cut(s)	115
MslI	CAYNNNNRTG	7 cut(s)	548, 564, 950, 1033, 1359, 1441, 2909
MspCI	CTTAAG	1 cut(s)	2950
MspI	CCGG	8 cut(s)	44, 104, 111, 116, 173, 835, 2944, 3028
MspR9I	CCNGG	4 cut(s)	112, 245, 2173, 3029
MunI	CAATTG	1 cut(s)	2004
Mva1269I	GAATGC	3 cut(s)	797, 1285, 3192
MvaI	CCWGG	2 cut(s)	245, 2173
MvnI	CGCG	3 cut(s)	100, 185, 237
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	112, 3029
NdeI	CATATG	2 cut(s)	1072, 2329
NgoMIV	GCCGGC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	1739
NlaIV	GGNNCC	6 cut(s)	171, 207, 943, 1434, 1540, 3152
NmuCI	GTSAC	5 cut(s)	106, 541, 550, 1397, 2939
NsbI	TGCGCA	1 cut(s)	3000
NsiI	ATGCAT	1 cut(s)	1285
NspI	RCATGY	3 cut(s)	484, 2735, 2999
OliI	CACNNNNGTG	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	2999
PagI	TCATGA	2 cut(s)	1150, 1503
PceI	AGGCCT	2 cut(s)	715, 871
PciSI	GCTCTTC	1 cut(s)	1060
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	3 cut(s)	797, 1285, 3192
PdiI	GCCGGC	1 cut(s)	117
PleI	GAGTC	6 cut(s)	126, 755, 834, 2140, 2668, 2909
PpsI	GAGTC	6 cut(s)	126, 755, 834, 2140, 2668, 2909
PsiI	TTATAA	2 cut(s)	492, 1272
Psp124BI	GAGCTC	4 cut(s)	775, 834, 2431, 2593
Psp1406I	AACGTT	1 cut(s)	2017
Psp6I	CCWGG	2 cut(s)	243, 2171
PspEI	GGTNACC	3 cut(s)	106, 541, 1397
PspGI	CCWGG	2 cut(s)	243, 2171
PspN4I	GGNNCC	6 cut(s)	171, 207, 943, 1434, 1540, 3152
PspPI	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
PstI	CTGCAG	1 cut(s)	3144
PstNI	CAGNNNCTG	4 cut(s)	599, 1453, 2473, 3097
PsuI	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
RsaI	GTAC	5 cut(s)	322, 440, 1628, 2686, 2977
RsaNI	GTAC	5 cut(s)	321, 439, 1627, 2685, 2976
RseI	CAYNNNNRTG	7 cut(s)	548, 564, 950, 1033, 1359, 1441, 2909
SacI	GAGCTC	4 cut(s)	775, 834, 2431, 2593
SapI	GCTCTTC	1 cut(s)	1060
Sau96I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
ScaI	AGTACT	1 cut(s)	2977
SchI	GAGTC	6 cut(s)	126, 755, 834, 2140, 2669, 2909
ScrFI	CCNGG	4 cut(s)	112, 245, 2173, 3029
SduI	GDGCHC	5 cut(s)	349, 775, 834, 2431, 2593
SfcI	CTRYAG	3 cut(s)	1197, 2528, 3140
SfiI	GGCCNNNNNGGCC	1 cut(s)	121
SinI	GGWCC	5 cut(s)	959, 1208, 1433, 1484, 2175
SmiMI	CAYNNNNRTG	7 cut(s)	548, 564, 950, 1033, 1359, 1441, 2909
SmlI	CTYRAG	5 cut(s)	1543, 1862, 1926, 2430, 2950
SmoI	CTYRAG	5 cut(s)	1543, 1862, 1926, 2430, 2950
SpeI	ACTAGT	1 cut(s)	2681
SphI	GCATGC	1 cut(s)	2999
SseBI	AGGCCT	2 cut(s)	715, 871
SsiI	CCGC	9 cut(s)	86, 89, 100, 185, 231, 808, 1594, 1856, 3046
SspI	AATATT	2 cut(s)	453, 1372
SspMI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
SstI	GAGCTC	4 cut(s)	775, 834, 2431, 2593
StuI	AGGCCT	2 cut(s)	715, 871
StyD4I	CCNGG	4 cut(s)	110, 243, 2171, 3027
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	4 cut(s)	1112, 2689, 2717, 3088
TaiI	ACGT	5 cut(s)	440, 1632, 2020, 2725, 2913
TaqI	TCGA	7 cut(s)	130, 654, 843, 1047, 1870, 2663, 2796
TatI	WGTACW	3 cut(s)	320, 2684, 2975
TauI	GCSGC	5 cut(s)	88, 91, 103, 811, 3048
TscAI	CASTG	7 cut(s)	1020, 1143, 1179, 1739, 1882, 2141, 2722
TseFI	GTSAC	5 cut(s)	106, 541, 550, 1397, 2939
Tsp45I	GTSAC	5 cut(s)	106, 541, 550, 1397, 2939
TspGWI	ACGGA	6 cut(s)	51, 214, 554, 1679, 2561, 2580
TspRI	CASTG	7 cut(s)	1020, 1143, 1179, 1739, 1882, 2141, 2722
Vha464I	CTTAAG	1 cut(s)	2950
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	5 cut(s)	959, 1208, 1433, 1484, 2175
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	5 cut(s)	849, 875, 1259, 2063, 2601
XbaI	TCTAGA	2 cut(s)	697, 1990
XceI	RCATGY	3 cut(s)	484, 2735, 2999
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XmiI	GTMKAC	2 cut(s)	138, 2527
XspI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
ZrmI	AGTACT	1 cut(s)	2977
Zsp2I	ATGCAT	1 cut(s)	1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.