Rorug04G0441800
NAC Family

Serine threonine-protein kinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003429
Physical Location & Seq
Forward (+)
59835165 .. 59843369
8205 bp
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UTR
Exon/CDS
Intron
Rorug04G0441800.1

Sequence Viewer

Length: 1617 bp
ATGGGGGCGTGTGTGTCCACGCCGGACCGGTGCGTGGGAGGGAGGCTGAGGTCCAAGAATAGGAGGAAGAATAGTCGAAAAAGGCTCAACTCATCTCCGGCCAGGACAGCTCCGGTGTCGGAGGTATCACCGGGAAAGCACGGTAGGTCTGCCGCACCTGATCGCTCCACCACCACCAACAGCCGCACTTTTCAAGAAAGTACTGAAGAAGCATGGTTTGATCCGGTTGCAATATTGGAATCTGACTGTGATGAAGATTACCTAAGTGTTCATGATGAGATTTCATCTCTAAATGGTTTTGAACGTGCTTCTGTATCAAGTACTTCATCTGCAAAAGATGCCAATTATGGGGACTATATTATTAGCGATGTCCATGGCCCTACAATGGAGCAGATGCATAAAGCAGGGGATGTATCACCAGAAAATTCTGCAAACTCTGTCACTGTGGTTGCGCAAAAGGGCGACAGACAAGTATTTAATGACGGTGATTCCCAAGCTAAATGTCATGGTCATTCAACAACCGAAGCAAATCAACCTGTATTCCTCGATGAAATCTCCTCCTCTGTGGATGAAAGTTCTTCCAAGGAGGAAGGTATATTGGATAATTGTGGGATTCTTCCAAGCAACTGTCTGCCTTGTCTTGTTTCAACTGAATCCTCAGATGGAAAGAGACGCTCACTAAGTTATAGTCCACCAAGTGCAAGGAAAAGGGCTGCCATAAAACTTCCCTTCAAATGGAAAGAACCTGCCAATGCAAGTTTATTTTCGTCAAAGATGATTCTAGAAAGACCAATAGCAGGTTCCCAAGTTCCTTTTTGCCCTATAGAAAAGAACATGTTCGATTCTTGGTCACAAATTGAGCCACGCACTTTCAAAATTCGGGGAGTGAACTATCTTAGGGACAAGAAGAAGGAATTTGCTGCGAACTATGCTGCATATTATCCATTTGGTCTTGACGTATTTTTATCTCAGCGAAAAGTAAATCATATAGCTCGGTTTGTGAAACTCCCTGCTGCTAGTTCTTCTGGAAATCTGCCTGCTATTCTTGTTGTAAATGTACAGGTACCATTGTATCCCGCTGCAATTTTTCAGGGTGAGACTGATGGAGAAGGAATGAATTTTGTTTTGTACTTTAAGCTTAATGAGTCATACTCAAAAGAACTTCCACCTCACTTTCAAGAAAGTATCAGAAAATTAATTGATGATGAAGTTGAAAAGGTTAAAGGTTTTCCTGTGGATACAATTGCACCCTTTCGAGAAAGGTTGAAAATATTGGGACGTGTTGTTAATGTGGAAGATCTTCATTTAAATACAGCAGAGCGGAAGCTTATGCAGGCTTACAATGAAAAACCTGTTCTTTCGCGACCTCAGCATGAGTTCTACTTGGGAGAAAACTACCTTGAGATTGACTTGGATATGCACAGATTTAGTTATATATCTAGGAAAGGTTTTGAAACATTCCTAGATAGATTGAAGATCTGCATCTTGGATGTCGGCCTCACAATTCAGGGGAACAAACCCGAAGAGTTGCCAGAGCAGATCTTATGTTGTATACGGTTGAATGGAATTGACTACATGAACTACAATCAACTGGGGTTGACCCAAGATCCCCTTTGA

Protein Analysis

538

Amino Acids

60.17

Weight (kDa)

6.19

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 283 - 524 7.4e-57 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 453
Acc36I ACCTGC 2 cut(s) 754, 788
Acc65I GGTACC 1 cut(s) 1063
AccB1I GGYRCC 1 cut(s) 1063
AccBSI CCGCTC 1 cut(s) 1321
AccI GTMKAC 1 cut(s) 1552
AccII CGCG 1 cut(s) 1363
AciI CCGC 4 cut(s) 153, 184, 1077, 1321
AclWI GGATC 2 cut(s) 215, 1601
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 4 cut(s) 424, 876, 914, 1117
AcuI CTGAAG 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 698
AfaI GTAC 5 cut(s) 202, 322, 1059, 1065, 1130
AfiI CCNNNNNNNGG 6 cut(s) 34, 60, 348, 385, 735, 797
AflIII ACRYGT 2 cut(s) 834, 1279
AgeI ACCGGT 1 cut(s) 27
AjiI CACGTC 1 cut(s) 1280
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 784, 816
AluBI AGCT 5 cut(s) 110, 497, 992, 1138, 1327
AluI AGCT 5 cut(s) 110, 497, 992, 1138, 1327
Alw26I GTCTC 2 cut(s) 664, 1091
AlwI GGATC 2 cut(s) 215, 1601
AoxI GGCC 3 cut(s) 99, 376, 1495
ApeKI GCWGC 5 cut(s) 713, 920, 932, 1013, 1079
ApoI RAATTY 4 cut(s) 424, 876, 914, 1117
AseI ATTAAT 1 cut(s) 1196
AsiGI ACCGGT 1 cut(s) 27
Asp700I GAANNNNTTC 2 cut(s) 836, 1299
Asp718I GGTACC 1 cut(s) 1063
AspLEI GCGC 1 cut(s) 454
AspS9I GGNCC 3 cut(s) 25, 51, 377
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 4 cut(s) 120, 408, 497, 1106
AvaII GGWCC 2 cut(s) 25, 51
BaeI ACNNNNGTAYC 4 cut(s) 1055, 1055, 1088, 1088
BanI GGYRCC 1 cut(s) 1063
BbvCI CCTCAGC 2 cut(s) 47, 1368
BbvI GCAGC 5 cut(s) 700, 907, 919, 1000, 1066
BccI CCATC 2 cut(s) 656, 1097
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 2 cut(s) 1083, 1231
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 664, 1091
BfaI CTAG 4 cut(s) 782, 1017, 1440, 1463
BfmI CTRYAG 1 cut(s) 822
BfuAI ACCTGC 2 cut(s) 754, 788
BfuI GTATCC 2 cut(s) 1083, 1231
BglII AGATCT 3 cut(s) 1297, 1476, 1539
BisI GCNGC 7 cut(s) 153, 184, 714, 921, 933, 1014, 1080
BlsI GCNGC 7 cut(s) 154, 185, 715, 922, 934, 1015, 1081
BmcAI AGTACT 2 cut(s) 202, 322
Bme1390I CCNGG 2 cut(s) 103, 132
Bme18I GGWCC 2 cut(s) 25, 51
BmgBI CACGTC 1 cut(s) 1280
BmgT120I GGNCC 3 cut(s) 25, 51, 377
BmiI GGNNCC 2 cut(s) 802, 1065
BmrFI CCNGG 2 cut(s) 103, 132
BmrI ACTGGG 1 cut(s) 1601
BmsI GCATC 3 cut(s) 328, 384, 1491
BmuI ACTGGG 1 cut(s) 1601
BplI GAGNNNNNCTC 2 cut(s) 1136, 1168
Bpu10I CCTNAGC 2 cut(s) 47, 1368
BpuEI CTTGAG 1 cut(s) 1421
BpuMI CCSGG 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 1481
BsaJI CCNNGG 2 cut(s) 373, 582
BsaWI WCCGGW 3 cut(s) 27, 112, 223
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 60, 348, 385, 735, 797
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 1596
Bse8I GATNNNNATC 1 cut(s) 1481
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 373, 582
BseGI GGATG 3 cut(s) 415, 574, 1495
BseJI GATNNNNATC 1 cut(s) 1481
BseLI CCNNNNNNNGG 6 cut(s) 34, 60, 348, 385, 735, 797
BseMII CTCAG 4 cut(s) 38, 672, 983, 1382
BseNI ACTGG 1 cut(s) 1596
BseRI GAGGAG 2 cut(s) 547, 550
BseXI GCAGC 5 cut(s) 700, 907, 919, 1000, 1066
Bsh1236I CGCG 1 cut(s) 1363
BshFI GGCC 3 cut(s) 101, 378, 1497
BshNI GGYRCC 1 cut(s) 1063
BshTI ACCGGT 1 cut(s) 27
BsiSI CCGG 6 cut(s) 23, 28, 98, 113, 131, 224
BslFI GGGAC 3 cut(s) 365, 914, 1290
BslI CCNNNNNNNGG 6 cut(s) 34, 60, 348, 385, 735, 797
BsmAI GTCTC 2 cut(s) 664, 1091
BsmBI CGTCTC 1 cut(s) 664
BsmFI GGGAC 3 cut(s) 365, 914, 1290
BsnI GGCC 3 cut(s) 101, 378, 1497
Bsp1407I TGTACA 1 cut(s) 1057
Bsp143I GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
Bsp19I CCATGG 1 cut(s) 373
Bsp68I TCGCGA 1 cut(s) 1363
BspACI CCGC 4 cut(s) 153, 184, 1077, 1321
BspANI GGCC 3 cut(s) 101, 378, 1497
BspCNI CTCAG 4 cut(s) 39, 671, 982, 1381
BspFNI CGCG 1 cut(s) 1363
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 802, 1065
BspMI ACCTGC 2 cut(s) 754, 788
BspPI GGATC 2 cut(s) 215, 1601
BspT107I GGYRCC 1 cut(s) 1063
BsrBI CCGCTC 1 cut(s) 1321
BsrFI RCCGGY 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 1057
BsrI ACTGG 1 cut(s) 1596
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 373, 582
BssMI GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
BssNAI GTATAC 1 cut(s) 1553
BssT1I CCWWGG 2 cut(s) 373, 582
Bst1107I GTATAC 1 cut(s) 1553
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 6 cut(s) 143, 248, 445, 485, 629, 1557
Bst6I CTCTTC 1 cut(s) 1518
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 1057
BstC8I GCNNGC 2 cut(s) 1038, 1335
BstDEI CTNAG 7 cut(s) 47, 263, 658, 680, 896, 969, 1368
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 3 cut(s) 415, 574, 1495
BstFNI CGCG 1 cut(s) 1363
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 6 cut(s) 163, 223, 1300, 1479, 1542, 1609
BstMAI GTCTC 2 cut(s) 664, 1091
BstMBI GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
BstMWI GCNNNNNNNGC 4 cut(s) 107, 338, 929, 1369
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 2 cut(s) 101, 130
BstSFI CTRYAG 1 cut(s) 822
BstUI CGCG 1 cut(s) 1363
BstV1I GCAGC 5 cut(s) 700, 907, 919, 1000, 1066
BstX2I RGATCY 4 cut(s) 1297, 1476, 1539, 1606
BstYI RGATCY 4 cut(s) 1297, 1476, 1539, 1606
BstZ17I GTATAC 1 cut(s) 1553
BsuI GTATCC 2 cut(s) 1083, 1231
BsuRI GGCC 3 cut(s) 101, 378, 1497
BtgI CCRYGG 1 cut(s) 373
BtgZI GCGATG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 1280
BtsCI GGATG 3 cut(s) 415, 574, 1495
BtsIMutI CAGTG 1 cut(s) 441
BtuMI TCGCGA 1 cut(s) 1363
BveI ACCTGC 2 cut(s) 754, 788
Cac8I GCNNGC 2 cut(s) 1038, 1335
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 3 cut(s) 25, 51, 377
CpoI CGGWCCG 1 cut(s) 25
CseI GACGC 1 cut(s) 681
Csp6I GTAC 5 cut(s) 201, 321, 1058, 1064, 1129
CspAI ACCGGT 1 cut(s) 27
CspI CGGWCCG 1 cut(s) 25
CviAII CATG 7 cut(s) 213, 272, 374, 506, 835, 1373, 1576
CviQI GTAC 5 cut(s) 201, 321, 1058, 1064, 1129
DdeI CTNAG 7 cut(s) 47, 263, 658, 680, 896, 969, 1368
DpnI GATC 6 cut(s) 162, 222, 1299, 1478, 1541, 1608
DpnII GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
DraI TTTAAA 1 cut(s) 1308
DraIII CACNNNGTG 1 cut(s) 698
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 1518
EarI CTCTTC 1 cut(s) 1518
Eco130I CCWWGG 2 cut(s) 373, 582
Eco47I GGWCC 2 cut(s) 25, 51
Eco57I CTGAAG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 373, 582
EcoT22I ATGCAT 1 cut(s) 399
ErhI CCWWGG 2 cut(s) 373, 582
Esp3I CGTCTC 1 cut(s) 664
FaeI CATG 7 cut(s) 216, 275, 377, 509, 838, 1376, 1579
FalI AAGNNNNNCTT 1 cut(s) 1596
FaqI GGGAC 3 cut(s) 365, 914, 1290
FatI CATG 7 cut(s) 212, 271, 373, 505, 834, 1372, 1575
FauI CCCGC 1 cut(s) 1084
FblI GTMKAC 1 cut(s) 1552
Fnu4HI GCNGC 7 cut(s) 153, 184, 714, 921, 933, 1014, 1080
FokI GGATG 3 cut(s) 422, 581, 1502
Fsp4HI GCNGC 7 cut(s) 153, 184, 714, 921, 933, 1014, 1080
FspBI CTAG 4 cut(s) 782, 1017, 1440, 1463
FspI TGCGCA 1 cut(s) 453
GlaI GCGC 1 cut(s) 453
GluI GCNGC 7 cut(s) 153, 184, 714, 921, 933, 1014, 1080
HaeIII GGCC 3 cut(s) 101, 378, 1497
HapII CCGG 6 cut(s) 23, 28, 98, 113, 131, 224
HgaI GACGC 1 cut(s) 681
HhaI GCGC 1 cut(s) 454
Hin1II CATG 7 cut(s) 216, 275, 377, 509, 838, 1376, 1579
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HincII GTYRAC 1 cut(s) 1599
HindII GTYRAC 1 cut(s) 1599
HindIII AAGCTT 2 cut(s) 1136, 1325
HinfI GANTC 7 cut(s) 239, 488, 613, 653, 778, 842, 1145
HpaII CCGG 6 cut(s) 23, 28, 98, 113, 131, 224
HphI GGTGA 4 cut(s) 120, 408, 497, 1106
Hpy166II GTNNAC 5 cut(s) 18, 692, 889, 1553, 1599
Hpy188I TCNGA 4 cut(s) 121, 244, 661, 1190
Hpy188III TCNNGA 8 cut(s) 194, 272, 782, 953, 1026, 1178, 1256, 1362
Hpy8I GTNNAC 5 cut(s) 18, 692, 889, 1553, 1599
HpyAV CCTTC 4 cut(s) 584, 739, 904, 1103
HpyCH4III ACNGT 6 cut(s) 143, 248, 445, 485, 629, 1557
HpyCH4IV ACGT 3 cut(s) 304, 957, 1279
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 338, 929, 1369
HpyF3I CTNAG 7 cut(s) 47, 263, 658, 680, 896, 969, 1368
HpySE526I ACGT 3 cut(s) 304, 957, 1279
Hsp92II CATG 7 cut(s) 216, 275, 377, 509, 838, 1376, 1579
HspAI GCGC 1 cut(s) 452
KpnI GGTACC 1 cut(s) 1067
Kzo9I GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
LmnI GCTCC 3 cut(s) 115, 170, 388
Lsp1109I GCAGC 5 cut(s) 700, 907, 919, 1000, 1066
LweI GCATC 3 cut(s) 328, 384, 1491
MaeI CTAG 4 cut(s) 782, 1017, 1440, 1463
MaeII ACGT 3 cut(s) 304, 957, 1279
MaeIII GTNAC 2 cut(s) 439, 849
MalI GATC 6 cut(s) 162, 222, 1299, 1478, 1541, 1608
MbiI CCGCTC 1 cut(s) 1321
MboI GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
MfeI CAATTG 1 cut(s) 1242
MflI RGATCY 4 cut(s) 1297, 1476, 1539, 1606
MlyI GAGTC 1 cut(s) 1154
MmeI TCCRAC 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 399
MroXI GAANNNNTTC 2 cut(s) 836, 1299
MseI TTAA 7 cut(s) 477, 1134, 1140, 1196, 1221, 1287, 1307
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 6 cut(s) 23, 28, 98, 113, 131, 224
MspR9I CCNGG 2 cut(s) 103, 132
MunI CAATTG 1 cut(s) 1242
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 1363
MwoI GCNNNNNNNGC 4 cut(s) 107, 338, 929, 1369
NciI CCSGG 1 cut(s) 132
NcoI CCATGG 1 cut(s) 373
NdeII GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
NlaIII CATG 7 cut(s) 216, 275, 377, 509, 838, 1376, 1579
NlaIV GGNNCC 2 cut(s) 802, 1065
NmuCI GTSAC 2 cut(s) 439, 849
NruI TCGCGA 1 cut(s) 1363
NsbI TGCGCA 1 cut(s) 453
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 1 cut(s) 838
PagI TCATGA 1 cut(s) 271
PciI ACATGT 1 cut(s) 834
PdmI GAANNNNTTC 2 cut(s) 836, 1299
PfeI GAWTC 6 cut(s) 239, 488, 613, 653, 778, 842
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 7 cut(s) 154, 185, 715, 922, 934, 1015, 1081
PleI GAGTC 1 cut(s) 1153
PpsI GAGTC 1 cut(s) 1153
PscI ACATGT 1 cut(s) 834
PshBI ATTAAT 1 cut(s) 1196
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 802, 1065
PspPI GGNCC 3 cut(s) 25, 51, 377
PsuI RGATCY 4 cut(s) 1297, 1476, 1539, 1606
RruI TCGCGA 1 cut(s) 1363
RsaI GTAC 5 cut(s) 202, 322, 1059, 1065, 1130
RsaNI GTAC 5 cut(s) 201, 321, 1058, 1064, 1129
Rsr2I CGGWCCG 1 cut(s) 25
RsrII CGGWCCG 1 cut(s) 25
SaqAI TTAA 7 cut(s) 477, 1134, 1140, 1196, 1221, 1287, 1307
SatI GCNGC 7 cut(s) 153, 184, 714, 921, 933, 1014, 1080
Sau3AI GATC 6 cut(s) 160, 220, 1297, 1476, 1539, 1606
Sau96I GGNCC 3 cut(s) 25, 51, 377
ScaI AGTACT 2 cut(s) 202, 322
SchI GAGTC 1 cut(s) 1154
ScrFI CCNGG 2 cut(s) 103, 132
SfaNI GCATC 3 cut(s) 328, 384, 1491
SfcI CTRYAG 1 cut(s) 822
SinI GGWCC 2 cut(s) 25, 51
SmiI ATTTAAAT 1 cut(s) 1308
SmlI CTYRAG 1 cut(s) 1400
SmoI CTYRAG 1 cut(s) 1400
SsiI CCGC 4 cut(s) 153, 184, 1077, 1321
SspI AATATT 2 cut(s) 234, 1272
SspMI CTAG 4 cut(s) 782, 1017, 1440, 1463
StyD4I CCNGG 2 cut(s) 101, 130
StyI CCWWGG 2 cut(s) 373, 582
SwaI ATTTAAAT 1 cut(s) 1308
TaaI ACNGT 6 cut(s) 143, 248, 445, 485, 629, 1557
TaiI ACGT 3 cut(s) 307, 960, 1282
TaqI TCGA 4 cut(s) 76, 546, 840, 1255
TatI WGTACW 4 cut(s) 200, 320, 1057, 1128
TauI GCSGC 2 cut(s) 155, 186
TfiI GAWTC 6 cut(s) 239, 488, 613, 653, 778, 842
Tru1I TTAA 7 cut(s) 477, 1134, 1140, 1196, 1221, 1287, 1307
Tru9I TTAA 7 cut(s) 477, 1134, 1140, 1196, 1221, 1287, 1307
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 2 cut(s) 439, 849
TseI GCWGC 5 cut(s) 713, 920, 932, 1013, 1079
Tsp45I GTSAC 2 cut(s) 439, 849
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 2 cut(s) 25, 51
VspI ATTAAT 1 cut(s) 1196
XapI RAATTY 4 cut(s) 424, 876, 914, 1117
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 1 cut(s) 838
XmiI GTMKAC 1 cut(s) 1552
XmnI GAANNNNTTC 2 cut(s) 836, 1299
XspI CTAG 4 cut(s) 782, 1017, 1440, 1463
ZrmI AGTACT 2 cut(s) 202, 322
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.