Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Reverse (-)

29251963 .. 29253982

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACATGGTGCAACGACTCCGACGATGAGAGGGCCATTCAGATTGTCAGCCCCCCTCCTCCTAATAACCCTAATAATCCAAATGAATTTCGGAACATAACTTGCCCCTCTTGTGGACATCACATAGAATTTGACCAGGCAGGAATTCATGATTTGCCTGGACTACCAGCAGGAGTGAAGTTCGATCCAACTGACCAAGAAATTCTTCAACATTTAGAGGCAAAGGTTTTGTCTGACACCAGAAAGCTGCATCCTCTCATTGATGAATTCATACCAACGCTTGAAGGGGAGAATGGGATCTGCTACACTCACCCTGAAAAGCTACCAGGAGTGAACAAAGACGGACAAATCCGCCACTTCTTCCACCGTCCCTCGAAGGCATACACGACTGGGACCAGAAAGCGAAGGAAGGTTCACACCGAAGAAGATGGAAGCGAAACAAGATGGCACAAAACCGGCAAGACAAGGCCGGTTCTTGTTGGCGGAGCAGTGAAGGGTTTCAAAAAGATCCTAGTCCTCTACACCAACTACGGGAGGCAAAGAAAACCAGAAAAGACCAATTGGGTCATGCACCAATACCACCTTGGCAACAATGAGGAAGAGAAAGATGGGGAGCTGGTGGTCTCAAAGGTCTTTTACCAGACACAGCCTAGGCAATGTGGATCAAGCATCAAAGATGTTCCAACGTTCGATCATCACAAAGGTGTGAATATAAGAAGTGGGCAAGGGAATGATGGTCTAATTAGTGCTGCTACCACTAATCCTCTTCCTCTAGCAAAGAAGGCAGGTCTTGTGGAGTACTACAATCCTGGAGGTCCTTTCATGAATTATGATCATCATCAACATAATCATAATCAAGGGGGGCATAATAGAGAAAGCCCACCTCAGCTAATCCCAAATTTAGTTGTCCAAGGTGACGGGTCTTCATTTATTCGATTAACTTCAGATGCAAGCAAAGGGAAGCTCGAGAGGAAAATAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

328

Amino Acids

36.7

Weight (kDa)

8.47

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	56 - 195	6.9e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	776
AciI	CCGC	2 cut(s)	352, 483
AclI	AACGTT	1 cut(s)	686
AclWI	GGATC	4 cut(s)	179, 305, 502, 670
AcsI	RAATTY	6 cut(s)	86, 128, 144, 201, 266, 898
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	2 cut(s)	113, 531
AgsI	TTSAA	3 cut(s)	209, 284, 502
AjnI	CCWGG	4 cut(s)	135, 157, 325, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	5 cut(s)	247, 322, 616, 889, 964
AluI	AGCT	5 cut(s)	247, 322, 616, 889, 964
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	4 cut(s)	179, 305, 502, 670
Ama87I	CYCGRG	1 cut(s)	965
AoxI	GGCC	2 cut(s)	33, 467
ApeKI	GCWGC	2 cut(s)	247, 749
ApoI	RAATTY	6 cut(s)	86, 128, 144, 201, 266, 898
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	2 cut(s)	204, 497
AspA2I	CCTAGG	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	33, 393, 815
AsuHPI	GGTGA	2 cut(s)	302, 926
AvaI	CYCGRG	1 cut(s)	965
AvaII	GGWCC	2 cut(s)	393, 815
AvrII	CCTAGG	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	915
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	234, 736
BccI	CCATC	4 cut(s)	422, 438, 602, 728
BciT130I	CCWGG	4 cut(s)	137, 159, 327, 810
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	3 cut(s)	512, 651, 773
BfuAI	ACCTGC	1 cut(s)	776
BisI	GCNGC	2 cut(s)	248, 750
BlnI	CCTAGG	1 cut(s)	650
BlsI	GCNGC	2 cut(s)	249, 751
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	4 cut(s)	137, 159, 327, 810
Bme18I	GGWCC	2 cut(s)	393, 815
BmeT110I	CYCGRG	1 cut(s)	965
BmgT120I	GGNCC	3 cut(s)	33, 393, 815
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	4 cut(s)	137, 159, 327, 810
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	3 cut(s)	259, 678, 937
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	915
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	885
BsaBI	GATNNNNATC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	3 cut(s)	583, 650, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 531
Bse118I	RCCGGY	2 cut(s)	455, 469
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	662
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	4 cut(s)	137, 159, 327, 810
BseDI	CCNNGG	3 cut(s)	583, 650, 910
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	2 cut(s)	113, 531
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	1 cut(s)	899
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	234, 736
BshFI	GGCC	2 cut(s)	35, 469
BsiHKCI	CYCGRG	1 cut(s)	965
BsiSI	CCGG	2 cut(s)	456, 470
BslFI	GGGAC	2 cut(s)	354, 406
BslI	CCNNNNNNNGG	2 cut(s)	113, 531
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	2 cut(s)	354, 406
BsnI	GGCC	2 cut(s)	35, 469
Bso31I	GGTCTC	1 cut(s)	628
BsoBI	CYCGRG	1 cut(s)	965
Bsp143I	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
BspACI	CCGC	2 cut(s)	352, 483
BspANI	GGCC	2 cut(s)	35, 469
BspCNI	CTCAG	1 cut(s)	898
BspHI	TCATGA	2 cut(s)	148, 822
BspLI	GGNNCC	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	776
BspPI	GGATC	4 cut(s)	179, 305, 502, 670
BspTNI	GGTCTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	662
BsrFI	RCCGGY	2 cut(s)	455, 469
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	2 cut(s)	455, 469
BssECI	CCNNGG	3 cut(s)	583, 650, 910
BssMI	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
BssT1I	CCWWGG	3 cut(s)	583, 650, 910
Bst2UI	CCWGG	4 cut(s)	137, 159, 327, 810
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	594, 771
BstC8I	GCNNGC	1 cut(s)	952
BstDEI	CTNAG	1 cut(s)	885
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	6 cut(s)	187, 300, 510, 665, 694, 835
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	4 cut(s)	137, 159, 327, 810
BstSCI	CCNGG	4 cut(s)	135, 157, 325, 808
BstV1I	GCAGC	2 cut(s)	234, 736
BstV2I	GAAGAC	1 cut(s)	915
BstX2I	RGATCY	2 cut(s)	297, 507
BstYI	RGATCY	2 cut(s)	297, 507
BsuRI	GGCC	2 cut(s)	35, 469
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	776
Cac8I	GCNNGC	1 cut(s)	952
CciI	TCATGA	2 cut(s)	148, 822
Cfr10I	RCCGGY	2 cut(s)	455, 469
Cfr13I	GGNCC	3 cut(s)	33, 393, 815
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	4 cut(s)	6, 149, 568, 823
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	1 cut(s)	885
DpnI	GATC	6 cut(s)	186, 299, 509, 664, 693, 834
DpnII	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
Eam1104I	CTCTTC	2 cut(s)	594, 771
EarI	CTCTTC	2 cut(s)	594, 771
EciI	GGCGGA	2 cut(s)	341, 498
Eco130I	CCWWGG	3 cut(s)	583, 650, 910
Eco31I	GGTCTC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	393, 815
Eco57I	CTGAAG	1 cut(s)	927
Eco88I	CYCGRG	1 cut(s)	965
EcoO109I	RGGNCCY	1 cut(s)	815
EcoRI	GAATTC	2 cut(s)	144, 266
EcoRII	CCWGG	4 cut(s)	135, 157, 325, 808
EcoT14I	CCWWGG	3 cut(s)	583, 650, 910
ErhI	CCWWGG	3 cut(s)	583, 650, 910
FaeI	CATG	4 cut(s)	9, 152, 571, 826
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	2 cut(s)	354, 406
FatI	CATG	4 cut(s)	5, 148, 567, 822
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	2 cut(s)	248, 750
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	248, 750
FspBI	CTAG	3 cut(s)	512, 651, 773
GluI	GCNGC	2 cut(s)	248, 750
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	35, 469
HapII	CCGG	2 cut(s)	456, 470
Hin1II	CATG	4 cut(s)	9, 152, 571, 826
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	2 cut(s)	456, 470
HphI	GGTGA	2 cut(s)	302, 926
Hpy166II	GTNNAC	3 cut(s)	116, 334, 415
Hpy188I	TCNGA	5 cut(s)	22, 42, 93, 235, 946
Hpy188III	TCNNGA	3 cut(s)	149, 823, 967
Hpy8I	GTNNAC	3 cut(s)	116, 334, 415
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	6 cut(s)	278, 370, 399, 403, 487, 775
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	4 cut(s)	12, 250, 571, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	1 cut(s)	885
HpySE526I	ACGT	1 cut(s)	686
Hsp92II	CATG	4 cut(s)	9, 152, 571, 826
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
LmnI	GCTCC	2 cut(s)	485, 613
Lsp1109I	GCAGC	2 cut(s)	234, 736
LweI	GCATC	3 cut(s)	259, 678, 937
MaeI	CTAG	3 cut(s)	512, 651, 773
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	1 cut(s)	914
MalI	GATC	6 cut(s)	186, 299, 509, 664, 693, 834
MboI	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
MboII	GAAGA	7 cut(s)	197, 352, 434, 437, 611, 758, 915
MfeI	CAATTG	1 cut(s)	559
MflI	RGATCY	2 cut(s)	297, 507
MluCI	AATT	9 cut(s)	86, 128, 144, 201, 266, 559, 741, 826, 898
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	3 cut(s)	45, 212, 707
MroXI	GAANNNNTTC	2 cut(s)	204, 497
MseI	TTAA	1 cut(s)	938
MslI	CAYNNNNRTG	1 cut(s)	702
MspI	CCGG	2 cut(s)	456, 470
MspR9I	CCNGG	4 cut(s)	137, 159, 327, 810
MunI	CAATTG	1 cut(s)	559
MvaI	CCWGG	4 cut(s)	137, 159, 327, 810
MwoI	GCNNNNNNNGC	1 cut(s)	782
NdeII	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
NlaIII	CATG	4 cut(s)	9, 152, 571, 826
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	914
OliI	CACNNNNGTG	1 cut(s)	702
PaeR7I	CTCGAG	1 cut(s)	965
PagI	TCATGA	2 cut(s)	148, 822
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	2 cut(s)	204, 497
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	2 cut(s)	249, 751
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	815
Psp1406I	AACGTT	1 cut(s)	686
Psp5II	RGGWCCY	1 cut(s)	815
Psp6I	CCWGG	4 cut(s)	135, 157, 325, 808
PspGI	CCWGG	4 cut(s)	135, 157, 325, 808
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	3 cut(s)	33, 393, 815
PspPPI	RGGWCCY	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	297, 507
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
RseI	CAYNNNNRTG	1 cut(s)	702
SaqAI	TTAA	1 cut(s)	938
SatI	GCNGC	2 cut(s)	248, 750
Sau3AI	GATC	6 cut(s)	184, 297, 507, 662, 691, 832
Sau96I	GGNCC	3 cut(s)	33, 393, 815
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	137, 159, 327, 810
SfaNI	GCATC	3 cut(s)	259, 678, 937
Sfr274I	CTCGAG	1 cut(s)	965
SinI	GGWCC	2 cut(s)	393, 815
SlaI	CTCGAG	1 cut(s)	965
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
Sse9I	AATT	9 cut(s)	86, 128, 144, 201, 266, 559, 741, 826, 898
SsiI	CCGC	2 cut(s)	352, 483
SspMI	CTAG	3 cut(s)	512, 651, 773
StyD4I	CCNGG	4 cut(s)	135, 157, 325, 808
StyI	CCWWGG	3 cut(s)	583, 650, 910
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	5 cut(s)	183, 374, 690, 934, 966
TasI	AATT	9 cut(s)	86, 128, 144, 201, 266, 559, 741, 826, 898
TatI	WGTACW	1 cut(s)	798
Tru1I	TTAA	1 cut(s)	938
Tru9I	TTAA	1 cut(s)	938
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	2 cut(s)	247, 749
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	7 cut(s)	99, 137, 259, 279, 811, 839, 915
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	495
VpaK11BI	GGWCC	2 cut(s)	393, 815
XapI	RAATTY	6 cut(s)	86, 128, 144, 201, 266, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XhoI	CTCGAG	1 cut(s)	965
XmaJI	CCTAGG	1 cut(s)	650
XmnI	GAANNNNTTC	2 cut(s)	204, 497
XspI	CTAG	3 cut(s)	512, 651, 773
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.