Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

14082660 .. 14084553

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACTTGGTGCAATGACCGTAGCGATGTTCAGACCGTTGAAAGAATCATTCCCTCCCCGGGGGCGGCTGAGTCCCCCGTAGCCTCACTTCCGGTCTCTTGTCACAAAACTTGCCCTTCTTGTGGCCATAACTTCAAGTTTCACGAACAGGCTGGGATCCATGACTTGCCGGGACTTCCTGCTGGAGTAAAATTTGATCCGACGGATCAAGAGGTCTTGGAGCATCTTGAAGGCAAGGTAAGAGATGACGCAAAAAAGCTTCATCCTCTCATTGATGAGTTTATCCGTACCATCGATGGTGAAAACGGCATTTGTTATACCCATCCTGAAAAATTGCCAGGAGTGAACAAGGACGGGACGGTGCGTCATTTCTTCCACCGACCGTCGAAGGCATACACGACGGGAACAAGAAAGCGACGTAAAGTCCACACTGATTCTGACGTCGGTGGAGAGACACGGTGGCACAAGACAGGAAAAACACGGCCAGTTCTTGCTGGAGGAAGAGTGAGAGGCTACAAGAAAATCCTAGTGCTCTACACAAACTACGGCAAACAAAAAAAACCCGAGAAGACTAATTGGGTAATGCATCAATATCATCTTGGCACTAGCGAGGAAGAGAAAGAAGGTGAGCTCGTCGTCTCCAAAGTCTTTTACCAGACTCAACCACGTCAATGCGGTGGCTCCGTTGCTGCTGCAGCCACCGCTAAGGACCGACCTTACCTCCACGGCCTCGGTGGAGGTGGTGGCCGCCACCTTCATTACCATCTTCATCATAACAACGGTAACGGTAAGAGCAACGGCAGTGGGGGAACCGCCGGAGCCGGTGAGTATTATCACAATATTCCGGCTATTATCTCGTTCAATCAGACCGGGATACAGAACCACTTGGTTCATGACTCTCAACCTTTTATCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

305

Amino Acids

33.7

Weight (kDa)

9.09

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	60 - 200	5.1e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AciI	CCGC	5 cut(s)	65, 675, 702, 748, 813
AclWI	GGATC	4 cut(s)	151, 164, 191, 213
AcoI	YGGCCR	3 cut(s)	124, 482, 745
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	4 cut(s)	59, 60, 64, 122
AgsI	TTSAA	4 cut(s)	41, 136, 230, 862
AhdI	GACNNNNNGTC	2 cut(s)	363, 422
AjiI	CACGTC	1 cut(s)	668
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	259, 631
AluI	AGCT	2 cut(s)	259, 631
Alw21I	GWGCWC	2 cut(s)	534, 633
Alw26I	GTCTC	3 cut(s)	100, 446, 643
AlwI	GGATC	4 cut(s)	151, 164, 191, 213
Ama87I	CYCGRG	2 cut(s)	58, 563
AoxI	GGCC	4 cut(s)	124, 482, 727, 745
ApeKI	GCWGC	3 cut(s)	689, 692, 695
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	709
AsuC2I	CCSGG	4 cut(s)	59, 60, 171, 871
AsuHPI	GGTGA	3 cut(s)	311, 638, 836
AvaI	CYCGRG	2 cut(s)	58, 563
AvaII	GGWCC	1 cut(s)	709
BalI	TGGCCA	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	72, 104
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	2 cut(s)	534, 633
BbvI	GCAGC	3 cut(s)	676, 679, 707
BccI	CCATC	4 cut(s)	290, 299, 330, 771
BceAI	ACGGC	5 cut(s)	322, 497, 562, 742, 814
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	867
BcnI	CCSGG	4 cut(s)	59, 60, 171, 871
BcoDI	GTCTC	3 cut(s)	100, 446, 643
BfaI	CTAG	2 cut(s)	527, 606
BfmI	CTRYAG	1 cut(s)	693
BfuI	GTATCC	1 cut(s)	867
BisI	GCNGC	5 cut(s)	66, 690, 693, 696, 748
BlsI	GCNGC	5 cut(s)	67, 691, 694, 697, 749
Bme1390I	CCNGG	5 cut(s)	59, 60, 171, 339, 871
Bme18I	GGWCC	1 cut(s)	709
BmeRI	GACNNNNNGTC	2 cut(s)	363, 422
BmeT110I	CYCGRG	2 cut(s)	58, 563
BmgBI	CACGTC	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	4 cut(s)	158, 682, 811, 820
BmrFI	CCNGG	5 cut(s)	59, 60, 171, 339, 871
BmsI	GCATC	2 cut(s)	232, 595
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	2 cut(s)	204, 516
Bpu10I	CCTNAGC	1 cut(s)	705
BpuMI	CCSGG	4 cut(s)	59, 60, 171, 871
Bsa29I	ATCGAT	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	5 cut(s)	57, 58, 59, 724, 730
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 60, 64, 122
Bse118I	RCCGGY	1 cut(s)	821
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	5 cut(s)	57, 58, 59, 724, 730
BseGI	GGATG	2 cut(s)	262, 322
BseLI	CCNNNNNNNGG	4 cut(s)	59, 60, 64, 122
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	485
BseXI	GCAGC	3 cut(s)	676, 679, 707
BseYI	CCCAGC	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	4 cut(s)	126, 484, 729, 747
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	534, 633
BsiHKCI	CYCGRG	2 cut(s)	58, 563
BsiSI	CCGG	7 cut(s)	59, 92, 170, 816, 822, 845, 870
BslFI	GGGAC	3 cut(s)	58, 186, 370
BslI	CCNNNNNNNGG	4 cut(s)	59, 60, 64, 122
BsmAI	GTCTC	3 cut(s)	100, 446, 643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	3 cut(s)	58, 186, 370
BsnI	GGCC	4 cut(s)	126, 484, 729, 747
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	2 cut(s)	58, 563
Bsp1286I	GDGCHC	2 cut(s)	534, 633
Bsp143I	GATC	3 cut(s)	156, 196, 205
BspACI	CCGC	5 cut(s)	65, 675, 702, 748, 813
BspANI	GGCC	4 cut(s)	126, 484, 729, 747
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	4 cut(s)	158, 682, 811, 820
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	4 cut(s)	151, 164, 191, 213
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	821
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	5 cut(s)	57, 58, 59, 724, 730
BssMI	GATC	3 cut(s)	156, 196, 205
BssNI	GRCGYC	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	7 cut(s)	20, 37, 361, 384, 459, 782, 788
Bst6I	CTCTTC	2 cut(s)	496, 609
BstACI	GRCGYC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	69, 705
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	2 cut(s)	262, 322
BstKTI	GATC	3 cut(s)	159, 199, 208
BstMAI	GTCTC	3 cut(s)	100, 446, 643
BstMBI	GATC	3 cut(s)	156, 196, 205
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	2 cut(s)	695, 701
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	5 cut(s)	57, 58, 169, 337, 869
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	3 cut(s)	676, 679, 707
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	867
BsuRI	GGCC	4 cut(s)	126, 484, 729, 747
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	724
BtgZI	GCGATG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	668
BtsCI	GGATG	2 cut(s)	262, 322
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	2 cut(s)	429, 808
CciI	TCATGA	1 cut(s)	892
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	1 cut(s)	709
Cfr9I	CCCGGG	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	2 cut(s)	257, 353
Csp6I	GTAC	1 cut(s)	288
CspCI	CAANNNNNGTGG	2 cut(s)	784, 819
CviAII	CATG	2 cut(s)	161, 893
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	69, 705
DpnI	GATC	3 cut(s)	158, 198, 207
DpnII	GATC	3 cut(s)	156, 196, 205
DriI	GACNNNNNGTC	2 cut(s)	363, 422
EaeI	YGGCCR	3 cut(s)	124, 482, 745
Eam1104I	CTCTTC	2 cut(s)	496, 609
Eam1105I	GACNNNNNGTC	2 cut(s)	363, 422
EarI	CTCTTC	2 cut(s)	496, 609
Ecl136II	GAGCTC	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	709
Eco53kI	GAGCTC	1 cut(s)	631
Eco88I	CYCGRG	2 cut(s)	58, 563
EcoICRI	GAGCTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	633
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	2 cut(s)	164, 896
FaiI	YATR	6 cut(s)	129, 162, 318, 394, 774, 894
FaqI	GGGAC	3 cut(s)	58, 186, 370
FatI	CATG	2 cut(s)	160, 892
Fnu4HI	GCNGC	5 cut(s)	66, 690, 693, 696, 748
FokI	GGATG	2 cut(s)	249, 309
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	5 cut(s)	66, 690, 693, 696, 748
FspBI	CTAG	2 cut(s)	527, 606
GluI	GCNGC	5 cut(s)	66, 690, 693, 696, 748
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	2 cut(s)	204, 516
HaeIII	GGCC	4 cut(s)	126, 484, 729, 747
HapII	CCGG	7 cut(s)	59, 92, 170, 816, 822, 845, 870
HgaI	GACGC	2 cut(s)	257, 353
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	164, 896
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	5 cut(s)	45, 71, 434, 658, 896
HpaII	CCGG	7 cut(s)	59, 92, 170, 816, 822, 845, 870
HphI	GGTGA	3 cut(s)	311, 638, 836
Hpy166II	GTNNAC	2 cut(s)	346, 427
Hpy188I	TCNGA	4 cut(s)	33, 201, 439, 867
Hpy188III	TCNNGA	5 cut(s)	143, 209, 227, 326, 893
Hpy8I	GTNNAC	2 cut(s)	346, 427
Hpy99I	CGWCG	6 cut(s)	205, 388, 403, 420, 446, 638
HpyAV	CCTTC	5 cut(s)	126, 224, 382, 617, 764
HpyCH4III	ACNGT	7 cut(s)	20, 37, 361, 384, 459, 782, 788
HpyCH4IV	ACGT	3 cut(s)	418, 441, 667
HpyCH4V	TGCA	3 cut(s)	12, 586, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	695, 701
HpyF3I	CTNAG	2 cut(s)	69, 705
HpySE526I	ACGT	3 cut(s)	418, 441, 667
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	164, 896
Kzo9I	GATC	3 cut(s)	156, 196, 205
LmnI	GCTCC	3 cut(s)	220, 686, 818
Lsp1109I	GCAGC	3 cut(s)	676, 679, 707
LweI	GCATC	2 cut(s)	232, 595
MaeI	CTAG	2 cut(s)	527, 606
MaeII	ACGT	3 cut(s)	418, 441, 667
MaeIII	GTNAC	2 cut(s)	101, 782
MalI	GATC	3 cut(s)	158, 198, 207
MboI	GATC	3 cut(s)	156, 196, 205
MboII	GAAGA	5 cut(s)	364, 513, 580, 626, 758
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	534, 633
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	3 cut(s)	191, 332, 574
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	3 cut(s)	80, 652, 890
MmeI	TCCRAC	1 cut(s)	224
Mox20I	TGGCCA	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	1 cut(s)	916
MslI	CAYNNNNRTG	1 cut(s)	670
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	7 cut(s)	59, 92, 170, 816, 822, 845, 870
MspR9I	CCNGG	5 cut(s)	59, 60, 171, 339, 871
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	695, 701
NciI	CCSGG	4 cut(s)	59, 60, 171, 871
NdeII	GATC	3 cut(s)	156, 196, 205
NlaIII	CATG	2 cut(s)	164, 896
NlaIV	GGNNCC	4 cut(s)	158, 682, 811, 820
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	588
PagI	TCATGA	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	45, 434
PkrI	GCNGC	5 cut(s)	67, 691, 694, 697, 749
PleI	GAGTC	3 cut(s)	79, 652, 890
PpsI	GAGTC	3 cut(s)	79, 652, 890
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	4 cut(s)	158, 682, 811, 820
PspPI	GGNCC	1 cut(s)	709
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	670
SacI	GAGCTC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	916
SatI	GCNGC	5 cut(s)	66, 690, 693, 696, 748
Sau3AI	GATC	3 cut(s)	156, 196, 205
Sau96I	GGNCC	1 cut(s)	709
SchI	GAGTC	3 cut(s)	80, 652, 890
ScrFI	CCNGG	5 cut(s)	59, 60, 171, 339, 871
SduI	GDGCHC	2 cut(s)	534, 633
SfaNI	GCATC	2 cut(s)	232, 595
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	709
SmaI	CCCGGG	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	670
Sse9I	AATT	3 cut(s)	191, 332, 574
SsiI	CCGC	5 cut(s)	65, 675, 702, 748, 813
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	2 cut(s)	527, 606
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	5 cut(s)	57, 58, 169, 337, 869
TaaI	ACNGT	7 cut(s)	20, 37, 361, 384, 459, 782, 788
TaiI	ACGT	3 cut(s)	421, 444, 670
TaqI	TCGA	2 cut(s)	294, 386
TaqII	GACCGA	1 cut(s)	726
TasI	AATT	3 cut(s)	191, 332, 574
TauI	GCSGC	2 cut(s)	68, 750
TfiI	GAWTC	2 cut(s)	45, 434
Tru1I	TTAA	1 cut(s)	916
Tru9I	TTAA	1 cut(s)	916
TscAI	CASTG	2 cut(s)	436, 808
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	689, 692, 695
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	4 cut(s)	251, 746, 758, 881
TspGWI	ACGGA	3 cut(s)	218, 275, 673
TspMI	CCCGGG	1 cut(s)	58
TspRI	CASTG	2 cut(s)	436, 808
VpaK11BI	GGWCC	1 cut(s)	709
XapI	RAATTY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XmaI	CCCGGG	1 cut(s)	58
XspI	CTAG	2 cut(s)	527, 606
ZraI	GACGTC	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.