Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

20426138 .. 20428141

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGACTCACTGCAATGATCTTGGTCAGGAAGACCCAAGACTCATTGCCAAAGATGGCTTAACCACCAGAACATGTCCTTCATGTGGTTACCAGATCAAATACCAACAACAGGCCGGAATTCAAAACTTGCCGGGGCTGCCAGCCGGGGTGAAGTTTGATCCTACGGATCAAGAGGTGCTTCAACATTTGGAGGGGAAGGTGTTGAGTAGTACTGATATTGCTGCAGGCAATAAGCTCCACCATCATCCTCTGATAGATCAGTTCATCCCTACAATTGAAGGGGAGAATGGAATTTGCTACACTCATCCACATAAGTTGCCGGGAGTTAGCAAAGATGGGCTGGTACGCCATTTCTTCCATCGACCTTCCAAGGCTTACACAACAGGATCTAGGAAAAGAAGAAAGGTGCACACCGATAGGGATAGCAGCAGCGAGGGGGGCGAGACGCGGTGGCACAAGACAGGCAAGACCAGACCAGTATTTGCTGGGGGCAAAGTGAAAGGGTACAAAAAAATACTTGTGCTCTACACGAACTATGGGAAGCAAAGAAAGCCTGAGAAAACCAACTGGGTAATGCACCAGTATCACCTTGGCAACAATGAAGAAGAGAAAGATGGAGAGCTTGTGGTTTCCAAAGTGTTCTACCAAACACAACCTAGACAATGTGGTAACTCAGGTATGAAGGACTTTAATAATAACTCTGCTGCCAAAGTACTGATGAATGGACAAAGTGAGCACAGTGAGGCACTTGTGCAGTATTGTAACAATGTTAATTCCTTCATATCCTTCGATCAAAATGGCCAAGATAGATCGAGCAGCAATCCTCAAATAATCCCTCCTCATTTTCCTCTTCATGATGGGTCGTTTGTTTCTTTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

294

Amino Acids

32.86

Weight (kDa)

9.09

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	47 - 197	1.1e-23	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	448
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	3 cut(s)	152, 174, 394
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	2 cut(s)	117, 291
AfaI	GTAC	4 cut(s)	211, 345, 506, 714
AfiI	CCNNNNNNNGG	2 cut(s)	83, 109
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	122, 182, 278
AluBI	AGCT	2 cut(s)	235, 622
AluI	AGCT	2 cut(s)	235, 622
Alw21I	GWGCWC	3 cut(s)	411, 525, 738
Alw26I	GTCTC	1 cut(s)	437
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	152, 174, 394
AoxI	GGCC	2 cut(s)	111, 799
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	6 cut(s)	136, 221, 426, 429, 704, 816
ApoI	RAATTY	2 cut(s)	117, 291
AsuC2I	CCSGG	3 cut(s)	132, 145, 321
AsuHPI	GGTGA	2 cut(s)	160, 578
BaeGI	GKGCMC	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	3 cut(s)	411, 525, 738
BbvI	GCAGC	6 cut(s)	123, 208, 438, 441, 691, 828
BccI	CCATC	6 cut(s)	47, 249, 329, 366, 608, 851
BcnI	CCSGG	3 cut(s)	132, 145, 321
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	2 cut(s)	390, 657
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	6 cut(s)	137, 222, 427, 430, 705, 817
BlsI	GCNGC	6 cut(s)	138, 223, 428, 431, 706, 818
BmcAI	AGTACT	2 cut(s)	211, 714
Bme1390I	CCNGG	3 cut(s)	132, 145, 321
BmrFI	CCNGG	3 cut(s)	132, 145, 321
BmrI	ACTGGG	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	36
BpuMI	CCSGG	3 cut(s)	132, 145, 321
BsaJI	CCNNGG	4 cut(s)	131, 144, 369, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 109
Bse1I	ACTGG	3 cut(s)	476, 572, 580
Bse3DI	GCAATG	2 cut(s)	19, 42
BseDI	CCNNGG	4 cut(s)	131, 144, 369, 589
BseGI	GGATG	3 cut(s)	244, 264, 304
BseLI	CCNNNNNNNGG	2 cut(s)	83, 109
BseMI	GCAATG	2 cut(s)	19, 42
BseMII	CTCAG	2 cut(s)	546, 687
BseNI	ACTGG	3 cut(s)	476, 572, 580
BseRI	GAGGAG	1 cut(s)	828
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	6 cut(s)	123, 208, 438, 441, 691, 828
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	2 cut(s)	113, 801
BsiHKAI	GWGCWC	3 cut(s)	411, 525, 738
BsiSI	CCGG	4 cut(s)	114, 131, 144, 320
BslI	CCNNNNNNNGG	2 cut(s)	83, 109
BsmAI	GTCTC	1 cut(s)	437
BsmBI	CGTCTC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	113, 801
Bsp1286I	GDGCHC	3 cut(s)	411, 525, 738
Bsp143I	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	113, 801
BspCNI	CTCAG	2 cut(s)	547, 686
BspFNI	CGCG	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	853
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	3 cut(s)	152, 174, 394
BsrDI	GCAATG	2 cut(s)	19, 42
BsrI	ACTGG	3 cut(s)	476, 572, 580
BssECI	CCNNGG	4 cut(s)	131, 144, 369, 589
BssMI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
BssT1I	CCWWGG	2 cut(s)	369, 589
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	2 cut(s)	600, 855
BstC8I	GCNNGC	2 cut(s)	141, 226
BstDEI	CTNAG	2 cut(s)	555, 673
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	3 cut(s)	244, 264, 304
BstFNI	CGCG	1 cut(s)	448
BstKTI	GATC	8 cut(s)	19, 96, 160, 169, 259, 389, 793, 812
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
BstNSI	RCATGY	1 cut(s)	75
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	130, 143, 319
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	6 cut(s)	123, 208, 438, 441, 691, 828
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	113, 801
BtsCI	GGATG	3 cut(s)	244, 264, 304
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	7, 745
Cac8I	GCNNGC	2 cut(s)	141, 226
CciI	TCATGA	1 cut(s)	853
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	4 cut(s)	210, 344, 505, 713
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	3 cut(s)	72, 81, 854
CviQI	GTAC	4 cut(s)	210, 344, 505, 713
DdeI	CTNAG	2 cut(s)	555, 673
DpnI	GATC	8 cut(s)	18, 95, 159, 168, 258, 388, 792, 811
DpnII	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
DraI	TTTAAA	1 cut(s)	876
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	2 cut(s)	600, 855
EarI	CTCTTC	2 cut(s)	600, 855
Eco130I	CCWWGG	2 cut(s)	369, 589
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	369, 589
ErhI	CCWWGG	2 cut(s)	369, 589
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	3 cut(s)	75, 84, 857
FaiI	YATR	7 cut(s)	73, 82, 312, 537, 680, 782, 855
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	3 cut(s)	71, 80, 853
Fnu4HI	GCNGC	6 cut(s)	137, 222, 427, 430, 705, 817
FokI	GGATG	3 cut(s)	231, 251, 291
Fsp4HI	GCNGC	6 cut(s)	137, 222, 427, 430, 705, 817
FspBI	CTAG	2 cut(s)	390, 657
GluI	GCNGC	6 cut(s)	137, 222, 427, 430, 705, 817
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	113, 801
HapII	CCGG	4 cut(s)	114, 131, 144, 320
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	75, 84, 857
HinfI	GANTC	2 cut(s)	4, 39
HpaII	CCGG	4 cut(s)	114, 131, 144, 320
HphI	GGTGA	2 cut(s)	160, 578
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	26, 170, 854
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	7 cut(s)	87, 190, 272, 375, 676, 787, 796
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4V	TGCA	5 cut(s)	12, 224, 409, 577, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
HpyF3I	CTNAG	2 cut(s)	555, 673
Hsp92II	CATG	3 cut(s)	75, 84, 857
Kzo9I	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	6 cut(s)	123, 208, 438, 441, 691, 828
MaeI	CTAG	2 cut(s)	390, 657
MaeIII	GTNAC	3 cut(s)	86, 668, 761
MalI	GATC	8 cut(s)	18, 95, 159, 168, 258, 388, 792, 811
MboI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
MboII	GAAGA	6 cut(s)	41, 346, 411, 614, 617, 842
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	3 cut(s)	411, 525, 738
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	4 cut(s)	117, 273, 291, 772
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	166, 184, 258, 427, 736, 834, 846, 849, 858
Mox20I	TGGCCA	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	4 cut(s)	59, 690, 771, 875
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	801
MspI	CCGG	4 cut(s)	114, 131, 144, 320
MspR9I	CCNGG	3 cut(s)	132, 145, 321
MunI	CAATTG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
NciI	CCSGG	3 cut(s)	132, 145, 321
NdeII	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
NlaIII	CATG	3 cut(s)	75, 84, 857
NspI	RCATGY	1 cut(s)	75
PagI	TCATGA	1 cut(s)	853
PciI	ACATGT	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	138, 223, 428, 431, 706, 818
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PscI	ACATGT	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	4 cut(s)	211, 345, 506, 714
RsaNI	GTAC	4 cut(s)	210, 344, 505, 713
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	59, 690, 771, 875
SatI	GCNGC	6 cut(s)	137, 222, 427, 430, 705, 817
Sau3AI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 790, 809
ScaI	AGTACT	2 cut(s)	211, 714
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	3 cut(s)	132, 145, 321
SduI	GDGCHC	3 cut(s)	411, 525, 738
SetI	ASST	9 cut(s)	177, 201, 237, 367, 408, 591, 624, 658, 679
SfcI	CTRYAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	4 cut(s)	117, 273, 291, 772
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	2 cut(s)	390, 657
StyD4I	CCNGG	3 cut(s)	130, 143, 319
StyI	CCWWGG	2 cut(s)	369, 589
TaaI	ACNGT	1 cut(s)	740
TaqI	TCGA	3 cut(s)	361, 789, 812
TasI	AATT	4 cut(s)	117, 273, 291, 772
TatI	WGTACW	2 cut(s)	209, 712
Tru1I	TTAA	4 cut(s)	59, 690, 771, 875
Tru9I	TTAA	4 cut(s)	59, 690, 771, 875
TscAI	CASTG	2 cut(s)	14, 745
TseI	GCWGC	6 cut(s)	136, 221, 426, 429, 704, 816
TspDTI	ATGAA	7 cut(s)	69, 253, 615, 695, 734, 769, 842
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	14, 745
VneI	GTGCAC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	117, 291
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XspI	CTAG	2 cut(s)	390, 657
ZrmI	AGTACT	2 cut(s)	211, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.