Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

6221213 .. 6223638

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG072600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACATGGCACTCAGATGACGATGAGGAAGAAGAGAGGGCAATTCAGTCAGTTGCTCCCTCTTGTGCAACTTATCCTCAATCTAAGAATAATAAGACCAATGAAATATCATGCCCATCTTGTGGCCACCCTATAGATATTCAAGACCAGGCTGGAATTCATGATTTGCCGGGACTACCAGCAGGGGTGAAATTTGATCCGACGGACCAAGAAATTCTTCAACATTTGGAGGCAAAAGTGCTCACTGATACCAGAAAGCTTCATCCACTCATTGATGAATTCATACCAACGCTTGAAGGAGAGAATGGAATTTGCTCTACCCACCCAGAAAAGCTACCAGGAGTGAACAAAGAAGGACAGATCCGCCACTTCTTTCACCGACCCTCAAAGGCCTACACCACCGGAACTAGGAAGCGCAGGAAGGTTCACACCGAAGAAGATGGAAGCGAGACGAGATGGCACAAAACAGGCAAGACAAGGCCGGTCCTCACCAACGGAGCAGTCAAGGGTTTCAAAAAGATCTTAGTCCTCTACACCAACTACGGCAGGCAAAGGAAGCCCGAGAAGACGAATTGGGTGATGCACCAGTACCACCTTGGTAACAATGAAGAAGAAAAAGATGGGGAGCTAGTGCTATCTAAGGTCTTTTACCAAACGCAACCTAGGCAGTGTGGTATGGGCACTCCAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

230

Amino Acids

26.08

Weight (kDa)

6.87

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	60 - 199	9.6e-27	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	2 cut(s)	191, 355
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	5 cut(s)	156, 191, 213, 278, 309
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	2 cut(s)	122, 408
AgsI	TTSAA	4 cut(s)	143, 221, 296, 514
AjnI	CCWGG	3 cut(s)	147, 337, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	259, 334, 628
AluI	AGCT	3 cut(s)	259, 334, 628
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	191, 355
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	3 cut(s)	124, 390, 479
ApoI	RAATTY	5 cut(s)	156, 191, 213, 278, 309
Asp700I	GAANNNNTTC	1 cut(s)	216
AspA2I	CCTAGG	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	205, 484
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	4 cut(s)	199, 368, 481, 589
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	2 cut(s)	205, 484
AvrII	CCTAGG	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	243
BccI	CCATC	4 cut(s)	124, 434, 450, 614
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	3 cut(s)	149, 339, 687
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	4 cut(s)	408, 629, 663, 691
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	1 cut(s)	519
BlnI	CCTAGG	1 cut(s)	662
Bme1390I	CCNGG	4 cut(s)	149, 171, 339, 687
Bme18I	GGWCC	2 cut(s)	205, 484
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	205, 484
BmrFI	CCNGG	4 cut(s)	149, 171, 339, 687
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	669
BpuMI	CCSGG	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	595, 662
BsaWI	WCCGGW	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 408
Bse118I	RCCGGY	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	3 cut(s)	149, 339, 687
BseDI	CCNNGG	2 cut(s)	595, 662
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	122, 408
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	586
BseSI	GKGCMC	1 cut(s)	683
BshFI	GGCC	3 cut(s)	126, 392, 481
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	170, 402, 482
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	122, 408
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	3 cut(s)	126, 392, 481
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	243, 683
Bsp143I	GATC	3 cut(s)	196, 360, 519
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	3 cut(s)	126, 392, 481
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	160
BspPI	GGATC	2 cut(s)	191, 355
BsrFI	RCCGGY	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	595, 662
BssMI	GATC	3 cut(s)	196, 360, 519
BssT1I	CCWWGG	2 cut(s)	595, 662
Bst2UI	CCWGG	3 cut(s)	149, 339, 687
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	13, 84, 523, 639
BstF5I	GGATG	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	3 cut(s)	199, 363, 522
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	196, 360, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	556, 664, 687
BstNI	CCWGG	3 cut(s)	149, 339, 687
BstSCI	CCNGG	4 cut(s)	147, 169, 337, 685
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	683
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	2 cut(s)	360, 519
BstYI	RGATCY	2 cut(s)	360, 519
BsuRI	GGCC	3 cut(s)	126, 392, 481
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	2 cut(s)	243, 674
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	205, 484
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	3 cut(s)	6, 111, 161
CviJI	RGCY	9 cut(s)	126, 152, 259, 334, 392, 481, 559, 628, 690
CviKI_1	RGCY	9 cut(s)	126, 152, 259, 334, 392, 481, 559, 628, 690
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	4 cut(s)	13, 84, 523, 639
DpnI	GATC	3 cut(s)	198, 362, 521
DpnII	GATC	3 cut(s)	196, 360, 519
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	595, 662
Eco147I	AGGCCT	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	205, 484
Eco88I	CYCGRG	1 cut(s)	560
EcoRI	GAATTC	2 cut(s)	156, 278
EcoRII	CCWGG	3 cut(s)	147, 337, 685
EcoT14I	CCWWGG	2 cut(s)	595, 662
ErhI	CCWWGG	2 cut(s)	595, 662
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	3 cut(s)	9, 114, 164
FaiI	YATR	6 cut(s)	7, 112, 134, 162, 284, 677
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	3 cut(s)	5, 110, 160
FokI	GGATG	1 cut(s)	249
FspBI	CTAG	4 cut(s)	408, 629, 663, 691
GlaI	GCGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	3 cut(s)	126, 392, 481
HapII	CCGG	3 cut(s)	170, 402, 482
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	3 cut(s)	9, 114, 164
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	257
HpaII	CCGG	3 cut(s)	170, 402, 482
HphI	GGTGA	4 cut(s)	199, 368, 481, 589
Hpy166II	GTNNAC	2 cut(s)	346, 427
Hpy188I	TCNGA	2 cut(s)	16, 201
Hpy188III	TCNNGA	2 cut(s)	143, 161
Hpy8I	GTNNAC	2 cut(s)	346, 427
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	290, 347, 415
HpyCH4V	TGCA	2 cut(s)	68, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	556, 664, 687
HpyF3I	CTNAG	4 cut(s)	13, 84, 523, 639
Hsp92II	CATG	3 cut(s)	9, 114, 164
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	196, 360, 519
LmnI	GCTCC	3 cut(s)	61, 497, 625
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	4 cut(s)	408, 629, 663, 691
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	3 cut(s)	198, 362, 521
MboI	GATC	3 cut(s)	196, 360, 519
MboII	GAAGA	8 cut(s)	41, 44, 209, 446, 449, 577, 620, 623
MflI	RGATCY	2 cut(s)	360, 519
MhlI	GDGCHC	2 cut(s)	243, 683
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	7 cut(s)	42, 156, 191, 213, 278, 309, 571
MluNI	TGGCCA	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	8 cut(s)	19, 30, 70, 87, 223, 394, 497, 539
Mox20I	TGGCCA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	3 cut(s)	170, 402, 482
MspR9I	CCNGG	4 cut(s)	149, 171, 339, 687
MvaI	CCWGG	3 cut(s)	149, 339, 687
MwoI	GCNNNNNNNGC	3 cut(s)	556, 664, 687
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	196, 360, 519
NlaIII	CATG	3 cut(s)	9, 114, 164
PagI	TCATGA	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	216
PflMI	CCANNNNNTGG	1 cut(s)	122
Psp6I	CCWGG	3 cut(s)	147, 337, 685
PspGI	CCWGG	3 cut(s)	147, 337, 685
PspPI	GGNCC	2 cut(s)	205, 484
PsuI	RGATCY	2 cut(s)	360, 519
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	196, 360, 519
Sau96I	GGNCC	2 cut(s)	205, 484
ScrFI	CCNGG	4 cut(s)	149, 171, 339, 687
SduI	GDGCHC	2 cut(s)	243, 683
SetI	ASST	7 cut(s)	261, 336, 426, 597, 630, 645, 664
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	2 cut(s)	205, 484
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	7 cut(s)	42, 156, 191, 213, 278, 309, 571
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	4 cut(s)	408, 629, 663, 691
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	4 cut(s)	147, 169, 337, 685
StyI	CCWWGG	2 cut(s)	595, 662
TasI	AATT	7 cut(s)	42, 156, 191, 213, 278, 309, 571
TscAI	CASTG	2 cut(s)	250, 674
TspDTI	ATGAA	6 cut(s)	117, 149, 251, 271, 291, 621
TspGWI	ACGGA	2 cut(s)	218, 510
TspRI	CASTG	2 cut(s)	250, 674
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	205, 484
XapI	RAATTY	5 cut(s)	156, 191, 213, 278, 309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmaJI	CCTAGG	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	4 cut(s)	408, 629, 663, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.