Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

5633829 .. 5636947

Gene Structure 3119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACATGGCACTCAGATGACGACGACGAAGAAGAGAGGGCAATTCAGTCAGTTGCTCCCTCTTCTGCAACTTATCCTCAATCTAAGAATAATAATAAGAACAATGAAATATCATGCCCATCTTGTGGCCACCCTATAGATATTCAAGACCAGGCTGGAATTCATGATTTGCCGGGACTACCAGCAGGGGTGAAATTTGATCCGACGGACCAAGAAATTCTTCAACATTTGGAGGCAAAAGTGCTCACTGATACCAGAAAGCTTCATCCACTCATTGATGAATTCATACCAACGCTTGAAGGAGAGAATGGAATTTGCTCTACCCACCCAGAAAAGCTCCCAGGAGTGAACAAAGAAGGACAGATCCGCCACTTCTTTCACCGACCCTCAAAGGCCTACACCACCGGAACTAGGAAGCGAAGGAAGGTTCACACCGAAGAAGATGGAAGCGAGACGAGATGGCACAAAACAGGCAAGACAAGGCCGGTCCTCACCAACGGAGCAGTCAAGGGTTTCAAAAAGATCTTAGTCCTCTATACCAACTACGGCAGGCAAAGGAAGCCCGAGAAGACGAATTGGGTGATGCACCAGTACCACCTTGGTAACAATGAAGAAGAAAAAGATGGGGAGCTAGTGCTATCTAAGGTCTTTTACCAAACGCAACCTAGGCAATGTGGTATGGGCACTCCAGGCATCAGAGATGGTGGTCCTCCATTGTTGAATCCATTTGATAGTCATCATCATAAAGGTCATGTGAATATTCGAAGTGGGCAAGATGGTAATTCTCTTCCTCTTCCTCTTCCTCCAAAGAAAGCTGGTGTTGTGGAATATTACAATCATAACCAACCTGGTCCTTTCATGAATTATGATCATCCACATCTGATTCAAGGAGTCCAGAATAGGGATATTCCAGCTCAACTAATTCCTAACATGGTTCTTCAAGGTGACGGATCATCGTTGTTTCGATATAATACTGCAGATACAAGCAAAGGAAAGCTAATTGAGAGGAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

338

Amino Acids

38.05

Weight (kDa)

7.79

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	61 - 200	2.6e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	3 cut(s)	194, 358, 958
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	5 cut(s)	159, 194, 216, 281, 312
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	3 cut(s)	125, 411, 901
AgsI	TTSAA	7 cut(s)	146, 224, 299, 517, 721, 887, 941
AjnI	CCWGG	4 cut(s)	150, 340, 688, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	6 cut(s)	262, 337, 631, 815, 914, 997
AluI	AGCT	6 cut(s)	262, 337, 631, 815, 914, 997
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	3 cut(s)	194, 358, 958
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	127, 393, 482
ApoI	RAATTY	5 cut(s)	159, 194, 216, 281, 312
Asp700I	GAANNNNTTC	1 cut(s)	219
AspA2I	CCTAGG	1 cut(s)	665
AspS9I	GGNCC	4 cut(s)	208, 487, 707, 851
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	5 cut(s)	202, 371, 484, 592, 956
AsuII	TTCGAA	1 cut(s)	763
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	4 cut(s)	208, 487, 707, 851
AvrII	CCTAGG	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	686
BalI	TGGCCA	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	6 cut(s)	127, 437, 453, 617, 695, 770
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	4 cut(s)	152, 342, 690, 849
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	411, 632, 666
BfmI	CTRYAG	2 cut(s)	135, 975
BglII	AGATCT	1 cut(s)	522
BlnI	CCTAGG	1 cut(s)	665
Bme1390I	CCNGG	5 cut(s)	152, 174, 342, 690, 849
Bme18I	GGWCC	4 cut(s)	208, 487, 707, 851
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	4 cut(s)	208, 487, 707, 851
BmrFI	CCNGG	5 cut(s)	152, 174, 342, 690, 849
BmsI	GCATC	2 cut(s)	573, 702
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	672
Bpu14I	TTCGAA	1 cut(s)	763
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	340, 598, 665
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 411, 901
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	677
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	4 cut(s)	152, 342, 690, 849
BseDI	CCNNGG	3 cut(s)	340, 598, 665
BseGI	GGATG	2 cut(s)	265, 871
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	3 cut(s)	125, 411, 901
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	686
BshFI	GGCC	3 cut(s)	129, 395, 484
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	3 cut(s)	173, 405, 485
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	125, 411, 901
BsmAI	GTCTC	1 cut(s)	446
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	129, 395, 484
BsoBI	CYCGRG	1 cut(s)	563
Bsp119I	TTCGAA	1 cut(s)	763
Bsp1286I	GDGCHC	2 cut(s)	246, 686
Bsp143I	GATC	5 cut(s)	199, 363, 522, 868, 950
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	3 cut(s)	129, 395, 484
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	2 cut(s)	163, 858
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	3 cut(s)	194, 358, 958
BspT104I	TTCGAA	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	3 cut(s)	340, 598, 665
BssMI	GATC	5 cut(s)	199, 363, 522, 868, 950
BssT1I	CCWWGG	2 cut(s)	598, 665
Bst2UI	CCWGG	4 cut(s)	152, 342, 690, 849
Bst6I	CTCTTC	5 cut(s)	27, 67, 792, 798, 804
BstBI	TTCGAA	1 cut(s)	763
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	4 cut(s)	13, 84, 526, 642
BstF5I	GGATG	2 cut(s)	265, 871
BstKTI	GATC	5 cut(s)	202, 366, 525, 871, 953
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	5 cut(s)	199, 363, 522, 868, 950
BstMWI	GCNNNNNNNGC	3 cut(s)	559, 667, 690
BstNI	CCWGG	4 cut(s)	152, 342, 690, 849
BstSCI	CCNGG	5 cut(s)	150, 172, 340, 688, 847
BstSFI	CTRYAG	2 cut(s)	135, 975
BstSLI	GKGCMC	1 cut(s)	686
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	363, 522
BstYI	RGATCY	2 cut(s)	363, 522
BsuRI	GGCC	3 cut(s)	129, 395, 484
BtsCI	GGATG	2 cut(s)	265, 871
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	551
CciI	TCATGA	2 cut(s)	163, 858
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	4 cut(s)	208, 487, 707, 851
CsiI	ACCWGGT	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	6 cut(s)	6, 114, 164, 752, 859, 931
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	4 cut(s)	13, 84, 526, 642
DpnI	GATC	5 cut(s)	201, 365, 524, 870, 952
DpnII	GATC	5 cut(s)	199, 363, 522, 868, 950
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	5 cut(s)	27, 67, 792, 798, 804
EarI	CTCTTC	5 cut(s)	27, 67, 792, 798, 804
EciI	GGCGGA	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	598, 665
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	4 cut(s)	208, 487, 707, 851
Eco88I	CYCGRG	1 cut(s)	563
EcoRI	GAATTC	2 cut(s)	159, 281
EcoRII	CCWGG	4 cut(s)	150, 340, 688, 847
EcoT14I	CCWWGG	2 cut(s)	598, 665
ErhI	CCWWGG	2 cut(s)	598, 665
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	6 cut(s)	9, 117, 167, 755, 862, 934
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	6 cut(s)	5, 113, 163, 751, 858, 930
FbaI	TGATCA	1 cut(s)	868
FokI	GGATG	2 cut(s)	252, 858
FspBI	CTAG	3 cut(s)	411, 632, 666
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	3 cut(s)	129, 395, 484
HapII	CCGG	3 cut(s)	173, 405, 485
Hin1II	CATG	6 cut(s)	9, 117, 167, 755, 862, 934
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	721, 883, 891
HpaII	CCGG	3 cut(s)	173, 405, 485
HphI	GGTGA	5 cut(s)	202, 371, 484, 592, 956
Hpy166II	GTNNAC	2 cut(s)	349, 430
Hpy188I	TCNGA	4 cut(s)	16, 204, 698, 882
Hpy188III	TCNNGA	4 cut(s)	146, 164, 859, 895
Hpy8I	GTNNAC	2 cut(s)	349, 430
Hpy99I	CGWCG	3 cut(s)	26, 29, 208
HpyAV	CCTTC	4 cut(s)	293, 350, 414, 418
HpyCH4V	TGCA	3 cut(s)	68, 586, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	559, 667, 690
HpyF3I	CTNAG	4 cut(s)	13, 84, 526, 642
Hsp92II	CATG	6 cut(s)	9, 117, 167, 755, 862, 934
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	5 cut(s)	199, 363, 522, 868, 950
LmnI	GCTCC	4 cut(s)	61, 342, 500, 628
LweI	GCATC	2 cut(s)	573, 702
MabI	ACCWGGT	1 cut(s)	847
MaeI	CTAG	3 cut(s)	411, 632, 666
MaeIII	GTNAC	2 cut(s)	602, 944
MalI	GATC	5 cut(s)	201, 365, 524, 870, 952
MboI	GATC	5 cut(s)	199, 363, 522, 868, 950
MflI	RGATCY	2 cut(s)	363, 522
MhlI	GDGCHC	2 cut(s)	246, 686
MlsI	TGGCCA	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	900
MmeI	TCCRAC	1 cut(s)	227
Mox20I	TGGCCA	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	129
MspI	CCGG	3 cut(s)	173, 405, 485
MspR9I	CCNGG	5 cut(s)	152, 174, 342, 690, 849
MvaI	CCWGG	4 cut(s)	152, 342, 690, 849
MwoI	GCNNNNNNNGC	3 cut(s)	559, 667, 690
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	199, 363, 522, 868, 950
NlaIII	CATG	6 cut(s)	9, 117, 167, 755, 862, 934
NmuCI	GTSAC	1 cut(s)	944
NspV	TTCGAA	1 cut(s)	763
PagI	TCATGA	2 cut(s)	163, 858
PceI	AGGCCT	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	721, 883
PflMI	CCANNNNNTGG	1 cut(s)	125
PleI	GAGTC	1 cut(s)	899
PpsI	GAGTC	1 cut(s)	899
Psp6I	CCWGG	4 cut(s)	150, 340, 688, 847
PspGI	CCWGG	4 cut(s)	150, 340, 688, 847
PspPI	GGNCC	4 cut(s)	208, 487, 707, 851
PstI	CTGCAG	1 cut(s)	979
PsuI	RGATCY	2 cut(s)	363, 522
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	15
Sau3AI	GATC	5 cut(s)	199, 363, 522, 868, 950
Sau96I	GGNCC	4 cut(s)	208, 487, 707, 851
SchI	GAGTC	1 cut(s)	900
ScrFI	CCNGG	5 cut(s)	152, 174, 342, 690, 849
SduI	GDGCHC	2 cut(s)	246, 686
SexAI	ACCWGGT	1 cut(s)	847
SfaNI	GCATC	2 cut(s)	573, 702
SfcI	CTRYAG	2 cut(s)	135, 975
SfuI	TTCGAA	1 cut(s)	763
SinI	GGWCC	4 cut(s)	208, 487, 707, 851
SmiMI	CAYNNNNRTG	1 cut(s)	15
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	2 cut(s)	760, 830
SspMI	CTAG	3 cut(s)	411, 632, 666
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	5 cut(s)	150, 172, 340, 688, 847
StyI	CCWWGG	2 cut(s)	598, 665
TaqI	TCGA	2 cut(s)	763, 964
TfiI	GAWTC	2 cut(s)	721, 883
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	944
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	8 cut(s)	120, 152, 254, 274, 294, 624, 847, 875
TspGWI	ACGGA	3 cut(s)	221, 513, 963
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	4 cut(s)	208, 487, 707, 851
XapI	RAATTY	5 cut(s)	159, 194, 216, 281, 312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XmaJI	CCTAGG	1 cut(s)	665
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	411, 632, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.