Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Reverse (-)

44030951 .. 44033803

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1309700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGACATGGTGCAACGACTCCGACGATGAGAGGGCTATTCAGATTGTCAGCCCCCCTCCTCCTAATAACCCTAATAATCCAAATGAATTTCGGAACATAACTTGCCCCTCTTGTGGACATCACATAGAATTCCAAGACCAGGCAGGAATTCATGATTTGCCTGGACTACCAGCAGGAGTGAAGTTCGATCCAACTGACCAAGAAATTCTTCTACATTTAGAGGCAAAGGTTTTGTCTGACACCAGAAAGCTGCATCCTCTCATTGATGAATTCATACCAACGCTTGAAGGGGAGAATGGGATTTGCTACACTCACCCTGAAAAGCTACCAGGAGTGAACAAAGACGGACAAATCCGCCACTTCTTCCACCGTCCCTCGAAGGCATACACGACTGGGACCAGAAAGCGAAGGAAGGTTCACACCGAAGAAGATGGAAGCGAAACAAGATGGCACAAAACCGGCAAGACAAGGCCGGTTCTTGTCGGCGGAGCAGTGAAGGGTTTCAAAAAGATCCTAGTCCTCTACACCAACTACGGGAGGCAAAGAAAACCAGAAAAGACCAATTGGGTCATGCACCAATACCACCTTGGCAACAATGAGGAAGAGAAAGATGGGGAGCTGGTGGTGTCAAAGGTCTTTTACCAGACACAGCCTAGGCAATGTGGATCAAGCATCAAAGATGTTCCAACGTTCGATCATCACAAAGGTGTGAATATAAGAAGTGGGCAAGGGAATGATGGTCTAATTAGTGCTGCTGCCACTAATCCTCTTCCTCTAGCAAAGAAGGCAGGTCTTGTGGAGTACTACAATCCTGGAGGTCCTTTCATGAATTATGATCATCATCAACATAATCATAATCAAGGGGGGCATAATAGAGAAAGCCCACCTCAGCTAATCCCAAATTTAGTTGTCCAAGGTGACGGGTCTTCGTTTGTTCGATTAACTTCAGATGCAAGCAAAGGGAAGCTCGAGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

327

Amino Acids

36.58

Weight (kDa)

8.47

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	57 - 196	2e-25	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	779
AciI	CCGC	2 cut(s)	355, 486
AclI	AACGTT	1 cut(s)	689
AclWI	GGATC	3 cut(s)	182, 505, 673
AcsI	RAATTY	6 cut(s)	86, 128, 147, 204, 269, 901
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	3 cut(s)	113, 139, 534
AgsI	TTSAA	2 cut(s)	287, 505
AjnI	CCWGG	4 cut(s)	138, 160, 328, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AleI	CACNNNNGTG	1 cut(s)	705
AluBI	AGCT	5 cut(s)	250, 325, 619, 892, 967
AluI	AGCT	5 cut(s)	250, 325, 619, 892, 967
AlwI	GGATC	3 cut(s)	182, 505, 673
Ama87I	CYCGRG	1 cut(s)	968
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	250, 752, 755
ApoI	RAATTY	6 cut(s)	86, 128, 147, 204, 269, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	2 cut(s)	207, 500
AspA2I	CCTAGG	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	396, 818
AsuHPI	GGTGA	2 cut(s)	305, 929
AvaI	CYCGRG	1 cut(s)	968
AvaII	GGWCC	2 cut(s)	396, 818
AvrII	CCTAGG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	918
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	3 cut(s)	237, 739, 742
BccI	CCATC	4 cut(s)	425, 441, 605, 731
BciT130I	CCWGG	4 cut(s)	140, 162, 330, 813
BclI	TGATCA	1 cut(s)	835
BfaI	CTAG	3 cut(s)	515, 654, 776
BfuAI	ACCTGC	1 cut(s)	779
BisI	GCNGC	3 cut(s)	251, 753, 756
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	3 cut(s)	252, 754, 757
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	4 cut(s)	140, 162, 330, 813
Bme18I	GGWCC	2 cut(s)	396, 818
BmeT110I	CYCGRG	1 cut(s)	968
BmgT120I	GGNCC	2 cut(s)	396, 818
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	4 cut(s)	140, 162, 330, 813
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	262, 681, 940
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	586, 653, 913
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 139, 534
Bse118I	RCCGGY	2 cut(s)	458, 472
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	665
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	4 cut(s)	140, 162, 330, 813
BseDI	CCNNGG	3 cut(s)	586, 653, 913
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	3 cut(s)	113, 139, 534
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	902
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	237, 739, 742
BshFI	GGCC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	968
BsiSI	CCGG	2 cut(s)	459, 473
BslFI	GGGAC	2 cut(s)	357, 409
BslI	CCNNNNNNNGG	3 cut(s)	113, 139, 534
BsmFI	GGGAC	2 cut(s)	357, 409
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	968
Bsp143I	GATC	5 cut(s)	187, 510, 665, 694, 835
BspACI	CCGC	2 cut(s)	355, 486
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	901
BspHI	TCATGA	2 cut(s)	151, 825
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	182, 505, 673
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	2 cut(s)	458, 472
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	2 cut(s)	458, 472
BssECI	CCNNGG	3 cut(s)	586, 653, 913
BssMI	GATC	5 cut(s)	187, 510, 665, 694, 835
BssT1I	CCWWGG	3 cut(s)	586, 653, 913
Bst2UI	CCWGG	4 cut(s)	140, 162, 330, 813
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	2 cut(s)	597, 774
BstC8I	GCNNGC	1 cut(s)	955
BstDEI	CTNAG	1 cut(s)	888
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	5 cut(s)	190, 513, 668, 697, 838
BstMBI	GATC	5 cut(s)	187, 510, 665, 694, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNI	CCWGG	4 cut(s)	140, 162, 330, 813
BstSCI	CCNGG	4 cut(s)	138, 160, 328, 811
BstV1I	GCAGC	3 cut(s)	237, 739, 742
BstV2I	GAAGAC	1 cut(s)	918
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	1 cut(s)	955
CciI	TCATGA	2 cut(s)	151, 825
Cfr10I	RCCGGY	2 cut(s)	458, 472
Cfr13I	GGNCC	2 cut(s)	396, 818
Csp6I	GTAC	1 cut(s)	802
CviAII	CATG	4 cut(s)	6, 152, 571, 826
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	1 cut(s)	888
DpnI	GATC	5 cut(s)	189, 512, 667, 696, 837
DpnII	GATC	5 cut(s)	187, 510, 665, 694, 835
Eam1104I	CTCTTC	2 cut(s)	597, 774
EarI	CTCTTC	2 cut(s)	597, 774
EciI	GGCGGA	2 cut(s)	344, 501
Eco130I	CCWWGG	3 cut(s)	586, 653, 913
Eco47I	GGWCC	2 cut(s)	396, 818
Eco57I	CTGAAG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	968
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRI	GAATTC	3 cut(s)	128, 147, 269
EcoRII	CCWGG	4 cut(s)	138, 160, 328, 811
EcoT14I	CCWWGG	3 cut(s)	586, 653, 913
ErhI	CCWWGG	3 cut(s)	586, 653, 913
FaeI	CATG	4 cut(s)	9, 155, 574, 829
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	2 cut(s)	357, 409
FatI	CATG	4 cut(s)	5, 151, 570, 825
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	3 cut(s)	251, 753, 756
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	251, 753, 756
FspBI	CTAG	3 cut(s)	515, 654, 776
GluI	GCNGC	3 cut(s)	251, 753, 756
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	2 cut(s)	459, 473
Hin1II	CATG	4 cut(s)	9, 155, 574, 829
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	2 cut(s)	459, 473
HphI	GGTGA	2 cut(s)	305, 929
Hpy166II	GTNNAC	3 cut(s)	116, 337, 418
Hpy188I	TCNGA	5 cut(s)	22, 42, 93, 238, 949
Hpy188III	TCNNGA	3 cut(s)	152, 826, 970
Hpy8I	GTNNAC	3 cut(s)	116, 337, 418
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	6 cut(s)	281, 373, 402, 406, 490, 778
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	689
HpyCH4V	TGCA	4 cut(s)	12, 253, 574, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	1 cut(s)	888
HpySE526I	ACGT	1 cut(s)	689
Hsp92II	CATG	4 cut(s)	9, 155, 574, 829
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	187, 510, 665, 694, 835
LmnI	GCTCC	2 cut(s)	488, 616
Lsp1109I	GCAGC	3 cut(s)	237, 739, 742
LweI	GCATC	3 cut(s)	262, 681, 940
MaeI	CTAG	3 cut(s)	515, 654, 776
MaeII	ACGT	1 cut(s)	689
MaeIII	GTNAC	1 cut(s)	917
MalI	GATC	5 cut(s)	189, 512, 667, 696, 837
MboI	GATC	5 cut(s)	187, 510, 665, 694, 835
MboII	GAAGA	7 cut(s)	200, 355, 437, 440, 614, 761, 918
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	1 cut(s)	510
MluCI	AATT	9 cut(s)	86, 128, 147, 204, 269, 562, 744, 829, 901
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	3 cut(s)	45, 215, 710
MroXI	GAANNNNTTC	2 cut(s)	207, 500
MseI	TTAA	1 cut(s)	941
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	2 cut(s)	459, 473
MspR9I	CCNGG	4 cut(s)	140, 162, 330, 813
MunI	CAATTG	1 cut(s)	562
MvaI	CCWGG	4 cut(s)	140, 162, 330, 813
MwoI	GCNNNNNNNGC	1 cut(s)	785
NdeII	GATC	5 cut(s)	187, 510, 665, 694, 835
NlaIII	CATG	4 cut(s)	9, 155, 574, 829
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	917
OliI	CACNNNNGTG	1 cut(s)	705
PaeR7I	CTCGAG	1 cut(s)	968
PagI	TCATGA	2 cut(s)	151, 825
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	2 cut(s)	207, 500
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	252, 754, 757
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	818
Psp1406I	AACGTT	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	4 cut(s)	138, 160, 328, 811
PspGI	CCWGG	4 cut(s)	138, 160, 328, 811
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	396, 818
PspPPI	RGGWCCY	1 cut(s)	818
PsuI	RGATCY	1 cut(s)	510
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	941
SatI	GCNGC	3 cut(s)	251, 753, 756
Sau3AI	GATC	5 cut(s)	187, 510, 665, 694, 835
Sau96I	GGNCC	2 cut(s)	396, 818
ScaI	AGTACT	1 cut(s)	803
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	140, 162, 330, 813
SfaNI	GCATC	3 cut(s)	262, 681, 940
Sfr274I	CTCGAG	1 cut(s)	968
SinI	GGWCC	2 cut(s)	396, 818
SlaI	CTCGAG	1 cut(s)	968
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
Sse9I	AATT	9 cut(s)	86, 128, 147, 204, 269, 562, 744, 829, 901
SsiI	CCGC	2 cut(s)	355, 486
SspMI	CTAG	3 cut(s)	515, 654, 776
StyD4I	CCNGG	4 cut(s)	138, 160, 328, 811
StyI	CCWWGG	3 cut(s)	586, 653, 913
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	5 cut(s)	186, 377, 693, 937, 969
TasI	AATT	9 cut(s)	86, 128, 147, 204, 269, 562, 744, 829, 901
TatI	WGTACW	1 cut(s)	801
Tru1I	TTAA	1 cut(s)	941
Tru9I	TTAA	1 cut(s)	941
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	917
TseI	GCWGC	3 cut(s)	250, 752, 755
Tsp45I	GTSAC	1 cut(s)	917
TspDTI	ATGAA	6 cut(s)	99, 140, 262, 282, 814, 842
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	396, 818
XapI	RAATTY	6 cut(s)	86, 128, 147, 204, 269, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XhoI	CTCGAG	1 cut(s)	968
XmaJI	CCTAGG	1 cut(s)	653
XmnI	GAANNNNTTC	2 cut(s)	207, 500
XspI	CTAG	3 cut(s)	515, 654, 776
ZrmI	AGTACT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.