Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

6010418 .. 6012986

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG069200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACATGGCACTCAGATGACGATGAGGAAGAAGAGAGGGCAATTCAGTCAGTTGCTCCCTCTTCTGCAACTTATCCTCAATCTAAGAATAATAAGACCAATGAAATATCATGCCCATCTTGTGGCCACCCTATAGATATTCAAGACCAGGCTGGAATTCATGATTTGCCGGGACTACCAGCAGGGGTGAAATTTGATCCGACTGACCAAGAAATTCTTCAACATTTGGAGGCAAAAGTGCTCACTGATACCAGAAAGCTTCATCCACTCATTGATGAATTCATACCAACGCTTGAAGGAGAGAATGGAATTTGCTCTACCCACCCAGAAAAGCTACCAGGAGTGAACAAAGAAGGACAGATCCGCCACTTCTTTCACCGACCCTCAAAGGCCTACACCACCGGAACTAGGAAGCGCAGGAAGGTTCACACCGAAGAAGATGGAAGCGAGACGAGATGGCACAAAACAGGCAAGACAAGGCCGGTCCTCGCCAACGGAGCAGTCAAGGGTTTCAAAAAGATCTTAGTCCTCTACACCAACTACGGCAGGCAAAGGAAGCCCGAGAAGACGAATTGGGTGATGCACCAGTACCACCTTGGTAACAATGAAGAAGAAAAAGATGGAGAGCTAGTGCTATCTAAGGTCTTTTACCAAACGCAACCTAGGCAGTGTGGTATGGGCACTCCAGGCATCAGAGATGGTGGTCCTCCATTGTTGAATCCATTTGATAGTCATCATCATAAAGGTCATGTGAATATTCGAAGTGGGCAAGATGGTAATTCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCAAAGAAAGCTGGTGTTGTGGAATATTACAATCATAACCAACCGGGTCCTTTCATGAACTATGATCATCCACATCTGATTCAAGGAGGCCAGAATAGGGATATTCCAGCTCAACTAATTCCTAACATGGTTCTTCAAGGTGACGGGTCATCGTTGTTTCGATATAATACTGCAGATACAAGCAAAGGAAAGCTAATTGAGAGGAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

341

Amino Acids

38.29

Weight (kDa)

7.79

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	60 - 199	2.8e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	2 cut(s)	191, 355
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	5 cut(s)	156, 191, 213, 278, 309
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	3 cut(s)	122, 408, 910
AgsI	TTSAA	7 cut(s)	143, 221, 296, 514, 718, 896, 950
AjnI	CCWGG	3 cut(s)	147, 337, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	6 cut(s)	259, 334, 628, 824, 923, 1006
AluI	AGCT	6 cut(s)	259, 334, 628, 824, 923, 1006
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	191, 355
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	4 cut(s)	124, 390, 479, 901
ApoI	RAATTY	5 cut(s)	156, 191, 213, 278, 309
Asp700I	GAANNNNTTC	1 cut(s)	216
AspA2I	CCTAGG	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	3 cut(s)	484, 704, 860
AsuC2I	CCSGG	2 cut(s)	171, 858
AsuHPI	GGTGA	4 cut(s)	199, 368, 589, 965
AsuII	TTCGAA	1 cut(s)	760
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	3 cut(s)	484, 704, 860
AvrII	CCTAGG	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	243
BccI	CCATC	6 cut(s)	124, 434, 450, 614, 692, 767
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	3 cut(s)	149, 339, 687
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	2 cut(s)	171, 858
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	3 cut(s)	408, 629, 663
BfmI	CTRYAG	2 cut(s)	132, 984
BglII	AGATCT	1 cut(s)	519
BlnI	CCTAGG	1 cut(s)	662
Bme1390I	CCNGG	5 cut(s)	149, 171, 339, 687, 858
Bme18I	GGWCC	3 cut(s)	484, 704, 860
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	3 cut(s)	484, 704, 860
BmiI	GGNNCC	1 cut(s)	861
BmrFI	CCNGG	5 cut(s)	149, 171, 339, 687, 858
BmsI	GCATC	2 cut(s)	570, 699
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	760
BpuMI	CCSGG	2 cut(s)	171, 858
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	595, 662
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 408, 910
Bse118I	RCCGGY	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	586
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	3 cut(s)	149, 339, 687
BseDI	CCNNGG	2 cut(s)	595, 662
BseGI	GGATG	2 cut(s)	262, 880
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	3 cut(s)	122, 408, 910
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	586
BseSI	GKGCMC	1 cut(s)	683
BshFI	GGCC	4 cut(s)	126, 392, 481, 903
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	4 cut(s)	170, 402, 482, 857
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	122, 408, 910
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	4 cut(s)	126, 392, 481, 903
BsoBI	CYCGRG	1 cut(s)	560
Bsp119I	TTCGAA	1 cut(s)	760
Bsp1286I	GDGCHC	2 cut(s)	243, 683
Bsp143I	GATC	4 cut(s)	196, 360, 519, 877
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	4 cut(s)	126, 392, 481, 903
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	2 cut(s)	160, 867
BspLI	GGNNCC	1 cut(s)	861
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	2 cut(s)	191, 355
BspT104I	TTCGAA	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	595, 662
BssMI	GATC	4 cut(s)	196, 360, 519, 877
BssT1I	CCWWGG	2 cut(s)	595, 662
Bst2UI	CCWGG	3 cut(s)	149, 339, 687
Bst6I	CTCTTC	7 cut(s)	27, 67, 789, 795, 801, 807, 813
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	13, 84, 523, 639
BstF5I	GGATG	2 cut(s)	262, 880
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	4 cut(s)	199, 363, 522, 880
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	4 cut(s)	196, 360, 519, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	497, 556, 664, 687
BstNI	CCWGG	3 cut(s)	149, 339, 687
BstSCI	CCNGG	5 cut(s)	147, 169, 337, 685, 856
BstSFI	CTRYAG	2 cut(s)	132, 984
BstSLI	GKGCMC	1 cut(s)	683
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	2 cut(s)	360, 519
BstYI	RGATCY	2 cut(s)	360, 519
BsuRI	GGCC	4 cut(s)	126, 392, 481, 903
BtsCI	GGATG	2 cut(s)	262, 880
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	2 cut(s)	243, 674
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	2 cut(s)	160, 867
CfoI	GCGC	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	481
Cfr13I	GGNCC	3 cut(s)	484, 704, 860
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	6 cut(s)	6, 111, 161, 749, 868, 940
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	4 cut(s)	13, 84, 523, 639
DpnI	GATC	4 cut(s)	198, 362, 521, 879
DpnII	GATC	4 cut(s)	196, 360, 519, 877
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	7 cut(s)	27, 67, 789, 795, 801, 807, 813
EarI	CTCTTC	7 cut(s)	27, 67, 789, 795, 801, 807, 813
EciI	GGCGGA	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	595, 662
Eco147I	AGGCCT	1 cut(s)	392
Eco47I	GGWCC	3 cut(s)	484, 704, 860
Eco88I	CYCGRG	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRI	GAATTC	2 cut(s)	156, 278
EcoRII	CCWGG	3 cut(s)	147, 337, 685
EcoT14I	CCWWGG	2 cut(s)	595, 662
ErhI	CCWWGG	2 cut(s)	595, 662
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	6 cut(s)	9, 114, 164, 752, 871, 943
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	6 cut(s)	5, 110, 160, 748, 867, 939
FbaI	TGATCA	1 cut(s)	877
FokI	GGATG	2 cut(s)	249, 867
FspBI	CTAG	3 cut(s)	408, 629, 663
GlaI	GCGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	4 cut(s)	126, 392, 481, 903
HapII	CCGG	4 cut(s)	170, 402, 482, 857
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	6 cut(s)	9, 114, 164, 752, 871, 943
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	2 cut(s)	718, 892
HpaII	CCGG	4 cut(s)	170, 402, 482, 857
HphI	GGTGA	4 cut(s)	199, 368, 589, 965
Hpy166II	GTNNAC	2 cut(s)	346, 427
Hpy188I	TCNGA	4 cut(s)	16, 201, 695, 891
Hpy188III	TCNNGA	3 cut(s)	143, 161, 868
Hpy8I	GTNNAC	2 cut(s)	346, 427
HpyAV	CCTTC	3 cut(s)	290, 347, 415
HpyCH4V	TGCA	3 cut(s)	68, 583, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	497, 556, 664, 687
HpyF3I	CTNAG	4 cut(s)	13, 84, 523, 639
Hsp92II	CATG	6 cut(s)	9, 114, 164, 752, 871, 943
HspAI	GCGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	4 cut(s)	196, 360, 519, 877
LmnI	GCTCC	2 cut(s)	61, 497
LweI	GCATC	2 cut(s)	570, 699
MaeI	CTAG	3 cut(s)	408, 629, 663
MaeIII	GTNAC	2 cut(s)	599, 953
MalI	GATC	4 cut(s)	198, 362, 521, 879
MboI	GATC	4 cut(s)	196, 360, 519, 877
MflI	RGATCY	2 cut(s)	360, 519
MhlI	GDGCHC	2 cut(s)	243, 683
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	224
Mox20I	TGGCCA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	4 cut(s)	170, 402, 482, 857
MspR9I	CCNGG	5 cut(s)	149, 171, 339, 687, 858
MvaI	CCWGG	3 cut(s)	149, 339, 687
MwoI	GCNNNNNNNGC	4 cut(s)	497, 556, 664, 687
NciI	CCSGG	2 cut(s)	171, 858
NdeII	GATC	4 cut(s)	196, 360, 519, 877
NlaIII	CATG	6 cut(s)	9, 114, 164, 752, 871, 943
NlaIV	GGNNCC	1 cut(s)	861
NmuCI	GTSAC	1 cut(s)	953
NspV	TTCGAA	1 cut(s)	760
PagI	TCATGA	2 cut(s)	160, 867
PceI	AGGCCT	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	718, 892
PflMI	CCANNNNNTGG	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	860
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	3 cut(s)	147, 337, 685
PspGI	CCWGG	3 cut(s)	147, 337, 685
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	3 cut(s)	484, 704, 860
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	988
PsuI	RGATCY	2 cut(s)	360, 519
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	196, 360, 519, 877
Sau96I	GGNCC	3 cut(s)	484, 704, 860
ScrFI	CCNGG	5 cut(s)	149, 171, 339, 687, 858
SduI	GDGCHC	2 cut(s)	243, 683
SfaNI	GCATC	2 cut(s)	570, 699
SfcI	CTRYAG	2 cut(s)	132, 984
SfuI	TTCGAA	1 cut(s)	760
SinI	GGWCC	3 cut(s)	484, 704, 860
SmiMI	CAYNNNNRTG	1 cut(s)	15
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	1 cut(s)	364
SspI	AATATT	2 cut(s)	757, 839
SspMI	CTAG	3 cut(s)	408, 629, 663
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	5 cut(s)	147, 169, 337, 685, 856
StyI	CCWWGG	2 cut(s)	595, 662
TaqI	TCGA	2 cut(s)	760, 973
TfiI	GAWTC	2 cut(s)	718, 892
TscAI	CASTG	2 cut(s)	250, 674
TseFI	GTSAC	1 cut(s)	953
Tsp45I	GTSAC	1 cut(s)	953
TspDTI	ATGAA	8 cut(s)	117, 149, 251, 271, 291, 621, 856, 884
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	250, 674
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	3 cut(s)	484, 704, 860
XapI	RAATTY	5 cut(s)	156, 191, 213, 278, 309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmaJI	CCTAGG	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	3 cut(s)	408, 629, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.