Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

41349670 .. 41351559

Gene Structure 1890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACTCACTGCAATGATCTTGGTCAGGAAGACCAAACAATCATTGCCAAAGATGGCCTAACCACCAGAACATGTCCTTCATGTGGTTATCAGATCAAATACCAACAACAGGCCGGAATTCAAAACTTGCCCGGGCTGCCAGCGGGAGTGAAGTTTGATCCTACGGATCAAGAGGTGCTTCAACATTTGGAGGGGAAGGTCTGGAGTAGTACTGATATTGCTGCAGGCAATAAGCTCCACCATCATCCTCTGATAGATCAGTTCATCCCTACAATTGAAGGGGAGAATGGAATTTGCTACACTCATCCACATAAGTTGCCAGGAGTTAGCAAAGATGGGCTGGTACGCCACTTCTTCCATCGACCTTCCAAAGCTTACACAACAGGATCTAGGAAAAGGAGAAAGGTGCACACTGATAGGGATAGCAGCGGCGAGGGGGGCGAGACGCGGTGGCACAAGACAGGCAAGACCAGACCAGTATTTGTTGGTGGCAAAGTGAAAGGGTACAAAAAGATACTTGTGCTCTACACAAACTATGGGAAGCAAAGAAAGCCTGAGAAAACCAACTGGGTAATGCACCAGTACCACCTTGGCAATAATGAAGAAGAGAAAGATGGAGAGCTTGTGGTCTCTAAGGTGTTCTACCAAACACAACCTAGACAATGTGGGAACTCAGGTATGAAGGACTTGATTAATAATAACTCTACCAAATTGATGAAGGGACAAAGTGGGCACAATGAGGCACTTGTTCAGTATTGTAATAATGCTAATTCCTTCATATCCTTTGATCAAAATGGCCAAGATAGATCGAGCAGTAATCCTCAAATAATTCCTCATCATTTTCCTCTTCATGATGGGTCGTTTGTTTCTTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

292

Amino Acids

32.83

Weight (kDa)

9.16

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	47 - 197	3e-23	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	448
AciI	CCGC	3 cut(s)	143, 429, 448
AclWI	GGATC	3 cut(s)	152, 174, 394
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	117, 291
AfaI	GTAC	4 cut(s)	211, 345, 506, 584
AfiI	CCNNNNNNNGG	2 cut(s)	83, 109
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	4 cut(s)	122, 182, 278, 874
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	235, 374, 622
AluI	AGCT	3 cut(s)	235, 374, 622
Alw21I	GWGCWC	2 cut(s)	411, 525
Alw26I	GTCTC	2 cut(s)	437, 634
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	152, 174, 394
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	3 cut(s)	55, 111, 796
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	136, 221, 426
ApoI	RAATTY	2 cut(s)	117, 291
AseI	ATTAAT	1 cut(s)	693
AsuC2I	CCSGG	2 cut(s)	132, 133
AvaI	CYCGRG	1 cut(s)	131
BaeGI	GKGCMC	2 cut(s)	411, 735
BalI	TGGCCA	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	2 cut(s)	411, 525
BbvI	GCAGC	3 cut(s)	123, 208, 438
BccI	CCATC	6 cut(s)	47, 249, 329, 366, 608, 848
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	787
BcnI	CCSGG	2 cut(s)	132, 133
BcoDI	GTCTC	2 cut(s)	437, 634
BfaI	CTAG	2 cut(s)	390, 657
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	4 cut(s)	137, 222, 427, 430
BlsI	GCNGC	4 cut(s)	138, 223, 428, 431
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	132, 133, 321
BmeT110I	CYCGRG	1 cut(s)	131
BmrFI	CCNGG	3 cut(s)	132, 133, 321
BmrI	ACTGGG	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	223
BpuMI	CCSGG	2 cut(s)	132, 133
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	131, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 109
Bse1I	ACTGG	3 cut(s)	476, 572, 580
Bse3DI	GCAATG	2 cut(s)	19, 42
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	131, 589
BseGI	GGATG	3 cut(s)	244, 264, 304
BseLI	CCNNNNNNNGG	2 cut(s)	83, 109
BseMI	GCAATG	2 cut(s)	19, 42
BseMII	CTCAG	2 cut(s)	546, 687
BseNI	ACTGG	3 cut(s)	476, 572, 580
BseSI	GKGCMC	2 cut(s)	411, 735
BseXI	GCAGC	3 cut(s)	123, 208, 438
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	57, 113, 798
BsiHKAI	GWGCWC	2 cut(s)	411, 525
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	114, 132
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	2 cut(s)	83, 109
BsmAI	GTCTC	2 cut(s)	437, 634
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	57, 113, 798
Bso31I	GGTCTC	1 cut(s)	634
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	411, 525, 735
Bsp143I	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
BspACI	CCGC	3 cut(s)	143, 429, 448
BspANI	GGCC	3 cut(s)	57, 113, 798
BspCNI	CTCAG	2 cut(s)	547, 686
BspFNI	CGCG	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	850
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	3 cut(s)	152, 174, 394
BspTNI	GGTCTC	1 cut(s)	634
BsrDI	GCAATG	2 cut(s)	19, 42
BsrI	ACTGG	3 cut(s)	476, 572, 580
BssECI	CCNNGG	2 cut(s)	131, 589
BssMI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	600, 852
BstC8I	GCNNGC	2 cut(s)	141, 226
BstDEI	CTNAG	3 cut(s)	555, 633, 673
BstF5I	GGATG	3 cut(s)	244, 264, 304
BstFNI	CGCG	1 cut(s)	448
BstKTI	GATC	8 cut(s)	19, 96, 160, 169, 259, 389, 790, 809
BstMAI	GTCTC	2 cut(s)	437, 634
BstMBI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	3 cut(s)	130, 131, 319
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	411, 735
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	3 cut(s)	123, 208, 438
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	57, 113, 798
BtsCI	GGATG	3 cut(s)	244, 264, 304
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	7, 411
Cac8I	GCNNGC	2 cut(s)	141, 226
CciI	TCATGA	1 cut(s)	850
Cfr9I	CCCGGG	1 cut(s)	131
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	4 cut(s)	210, 344, 505, 583
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	3 cut(s)	72, 81, 851
CviJI	RGCY	9 cut(s)	57, 113, 136, 235, 340, 374, 553, 622, 798
CviKI_1	RGCY	9 cut(s)	57, 113, 136, 235, 340, 374, 553, 622, 798
CviQI	GTAC	4 cut(s)	210, 344, 505, 583
DdeI	CTNAG	3 cut(s)	555, 633, 673
DpnI	GATC	8 cut(s)	18, 95, 159, 168, 258, 388, 789, 808
DpnII	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	600, 852
EarI	CTCTTC	2 cut(s)	600, 852
Eco130I	CCWWGG	1 cut(s)	589
Eco31I	GGTCTC	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	3 cut(s)	75, 84, 854
FaiI	YATR	7 cut(s)	73, 82, 312, 537, 680, 779, 852
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	3 cut(s)	71, 80, 850
FauI	CCCGC	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	4 cut(s)	137, 222, 427, 430
FokI	GGATG	3 cut(s)	231, 251, 291
Fsp4HI	GCNGC	4 cut(s)	137, 222, 427, 430
FspBI	CTAG	2 cut(s)	390, 657
GluI	GCNGC	4 cut(s)	137, 222, 427, 430
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	3 cut(s)	57, 113, 798
HapII	CCGG	2 cut(s)	114, 132
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	75, 84, 854
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	114, 132
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	93, 252
Hpy188III	TCNNGA	4 cut(s)	26, 170, 202, 851
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	7 cut(s)	87, 190, 272, 375, 676, 712, 784
HpyCH4V	TGCA	4 cut(s)	12, 224, 409, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
HpyF3I	CTNAG	3 cut(s)	555, 633, 673
Hsp92II	CATG	3 cut(s)	75, 84, 854
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	3 cut(s)	123, 208, 438
MaeI	CTAG	2 cut(s)	390, 657
MalI	GATC	8 cut(s)	18, 95, 159, 168, 258, 388, 789, 808
MboI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
MboII	GAAGA	5 cut(s)	41, 346, 614, 617, 839
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	3 cut(s)	411, 525, 735
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	6 cut(s)	117, 273, 291, 710, 769, 828
MluNI	TGGCCA	1 cut(s)	798
MnlI	CCTC	8 cut(s)	166, 184, 258, 427, 733, 831, 843, 855
Mox20I	TGGCCA	1 cut(s)	798
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	1 cut(s)	693
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	2 cut(s)	143, 429
MspI	CCGG	2 cut(s)	114, 132
MspR9I	CCNGG	3 cut(s)	132, 133, 321
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
NciI	CCSGG	2 cut(s)	132, 133
NdeII	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
NlaIII	CATG	3 cut(s)	75, 84, 854
NspI	RCATGY	1 cut(s)	75
PagI	TCATGA	1 cut(s)	850
PciI	ACATGT	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	138, 223, 428, 431
PscI	ACATGT	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	4 cut(s)	211, 345, 506, 584
RsaNI	GTAC	4 cut(s)	210, 344, 505, 583
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	4 cut(s)	137, 222, 427, 430
Sau3AI	GATC	8 cut(s)	16, 93, 157, 166, 256, 386, 787, 806
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	132, 133, 321
SduI	GDGCHC	3 cut(s)	411, 525, 735
SfcI	CTRYAG	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	12
SrfI	GCCCGGGC	1 cut(s)	133
Sse9I	AATT	6 cut(s)	117, 273, 291, 710, 769, 828
SsiI	CCGC	3 cut(s)	143, 429, 448
SspMI	CTAG	2 cut(s)	390, 657
StyD4I	CCNGG	3 cut(s)	130, 131, 319
StyI	CCWWGG	1 cut(s)	589
TaqI	TCGA	2 cut(s)	361, 809
TasI	AATT	6 cut(s)	117, 273, 291, 710, 769, 828
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	2 cut(s)	14, 418
TseI	GCWGC	3 cut(s)	136, 221, 426
TspDTI	ATGAA	7 cut(s)	69, 253, 615, 695, 731, 766, 839
TspGWI	ACGGA	1 cut(s)	179
TspMI	CCCGGG	1 cut(s)	131
TspRI	CASTG	2 cut(s)	14, 418
VneI	GTGCAC	1 cut(s)	407
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	2 cut(s)	117, 291
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XmaI	CCCGGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	390, 657
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.