Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Reverse (-)

43147419 .. 43148964

Gene Structure 1546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACTCACTGCAATGATCTTGGTCAGGAAGACCAAACAATCATTGCCAAAGATGGCCTAACCACCAGAACATGTCCTTCATGTGGTTATCAGATCAAATACCAACAACAGGCCGGAATTCAAAACTTGCCCGGGCTGCCAGCCGGAGTGAAGTTTGATCCTACGGATCAAGAGGTGCTTCAACATTTGGAGGGGAAGGTCTGGAGTAGTACTGATATTGCTGCAGGCAATAAGCTCCACCATCATCCTCTGATAGATCAGTTCATCCCTACAATTGAAGGGGAGAATGGAATTTGCTACACTCATCCACATAAGTTGCCAGGAGTTAGCAAAGATGGGCTGGTACGCCACTTCTTCCATCGACCTTCCAAGGCTTACACAACAGGATCTAGGAAAAGGAGAAAGGTGCACACTGATAGGGATAGCAGCGGCGAGGGGGCGAGACGCGGTGGCACAAGACAGGCAAGACCAGACCAGTATTTGTTGGTGGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

165

Amino Acids

18.35

Weight (kDa)

9.1

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	47 - 136	2.7e-09	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AciI	CCGC	2 cut(s)	429, 447
AclWI	GGATC	3 cut(s)	152, 174, 394
AcsI	RAATTY	2 cut(s)	117, 291
AfaI	GTAC	2 cut(s)	211, 345
AfiI	CCNNNNNNNGG	2 cut(s)	83, 109
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	122, 182, 278
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	436
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	152, 174, 394
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	55, 111
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	136, 221, 426
ApoI	RAATTY	2 cut(s)	117, 291
AsuC2I	CCSGG	2 cut(s)	132, 133
AvaI	CYCGRG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	123, 208, 438
BccI	CCATC	4 cut(s)	47, 249, 329, 366
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	2 cut(s)	132, 133
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	4 cut(s)	137, 222, 427, 430
BlsI	GCNGC	4 cut(s)	138, 223, 428, 431
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	132, 133, 321
BmeT110I	CYCGRG	1 cut(s)	131
BmrFI	CCNGG	3 cut(s)	132, 133, 321
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	223
BpuMI	CCSGG	2 cut(s)	132, 133
BsaJI	CCNNGG	2 cut(s)	131, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 109
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	2 cut(s)	19, 42
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	131, 369
BseGI	GGATG	3 cut(s)	244, 264, 304
BseLI	CCNNNNNNNGG	2 cut(s)	83, 109
BseMI	GCAATG	2 cut(s)	19, 42
BseNI	ACTGG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	123, 208, 438
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	57, 113
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	114, 132, 144
BslI	CCNNNNNNNGG	2 cut(s)	83, 109
BsmAI	GTCTC	1 cut(s)	436
BsmBI	CGTCTC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	57, 113
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
BspACI	CCGC	2 cut(s)	429, 447
BspANI	GGCC	2 cut(s)	57, 113
BspFNI	CGCG	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	3 cut(s)	152, 174, 394
BsrDI	GCAATG	2 cut(s)	19, 42
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	131, 369
BssMI	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	141, 226
BstF5I	GGATG	3 cut(s)	244, 264, 304
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	6 cut(s)	19, 96, 160, 169, 259, 389
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	3 cut(s)	130, 131, 319
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	123, 208, 438
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	57, 113
BtsCI	GGATG	3 cut(s)	244, 264, 304
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	2 cut(s)	7, 411
Cac8I	GCNNGC	2 cut(s)	141, 226
Cfr9I	CCCGGG	1 cut(s)	131
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	210, 344
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	2 cut(s)	72, 81
CviJI	RGCY	7 cut(s)	57, 113, 136, 143, 235, 340, 374
CviKI_1	RGCY	7 cut(s)	57, 113, 136, 143, 235, 340, 374
CviQI	GTAC	2 cut(s)	210, 344
DpnI	GATC	6 cut(s)	18, 95, 159, 168, 258, 388
DpnII	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
Eco130I	CCWWGG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	2 cut(s)	75, 84
FaiI	YATR	3 cut(s)	73, 82, 312
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	2 cut(s)	71, 80
Fnu4HI	GCNGC	4 cut(s)	137, 222, 427, 430
FokI	GGATG	3 cut(s)	231, 251, 291
Fsp4HI	GCNGC	4 cut(s)	137, 222, 427, 430
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	4 cut(s)	137, 222, 427, 430
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	57, 113
HapII	CCGG	3 cut(s)	114, 132, 144
HgaI	GACGC	1 cut(s)	453
Hin1II	CATG	2 cut(s)	75, 84
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	114, 132, 144
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	93, 252
Hpy188III	TCNNGA	3 cut(s)	26, 170, 202
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	4 cut(s)	87, 190, 272, 375
HpyCH4V	TGCA	3 cut(s)	12, 224, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	75, 84
Kzo9I	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	3 cut(s)	123, 208, 438
MaeI	CTAG	1 cut(s)	390
MalI	GATC	6 cut(s)	18, 95, 159, 168, 258, 388
MboI	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
MboII	GAAGA	2 cut(s)	41, 346
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	117, 273, 291
MnlI	CCTC	4 cut(s)	166, 184, 258, 427
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	429
MspI	CCGG	3 cut(s)	114, 132, 144
MspR9I	CCNGG	3 cut(s)	132, 133, 321
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	2 cut(s)	132, 133
NdeII	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
NlaIII	CATG	2 cut(s)	75, 84
NspI	RCATGY	1 cut(s)	75
PciI	ACATGT	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	138, 223, 428, 431
PscI	ACATGT	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	2 cut(s)	211, 345
RsaNI	GTAC	2 cut(s)	210, 344
RseI	CAYNNNNRTG	1 cut(s)	12
SatI	GCNGC	4 cut(s)	137, 222, 427, 430
Sau3AI	GATC	6 cut(s)	16, 93, 157, 166, 256, 386
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	132, 133, 321
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	5 cut(s)	177, 201, 237, 367, 408
SfcI	CTRYAG	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	12
SrfI	GCCCGGGC	1 cut(s)	133
Sse9I	AATT	3 cut(s)	117, 273, 291
SsiI	CCGC	2 cut(s)	429, 447
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	130, 131, 319
StyI	CCWWGG	1 cut(s)	369
TaqI	TCGA	1 cut(s)	361
TasI	AATT	3 cut(s)	117, 273, 291
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	432
TscAI	CASTG	2 cut(s)	14, 418
TseI	GCWGC	3 cut(s)	136, 221, 426
TspDTI	ATGAA	2 cut(s)	69, 253
TspGWI	ACGGA	1 cut(s)	179
TspMI	CCCGGG	1 cut(s)	131
TspRI	CASTG	2 cut(s)	14, 418
VneI	GTGCAC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	117, 291
XceI	RCATGY	1 cut(s)	75
XmaI	CCCGGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.