Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Reverse (-)

4961600 .. 4964318

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGACATGGCACTCAGATGAGGAAGAGGAAGAAGAGAGGGCAGCAGTTCAGTCAATAACTCCCTCCTCTGCAACATATCCTCAGCAATCTAAGAATAATAAGAACAATGAAATATCATCATGCCCGTCTTGTGGCCACCCTATAGATTTTCAAGACCAGGCTGGAATTCATGATTTGCCGGGACTACCAGCAGGGGTGAAATTTGATCCGACGGACCAGGAGATTCTTCAACATTTGGAGGCAAAAGTGCTCACTGATACCAGAAAGCTTCATCCACTCATTGATGAATTCATACCAACGCTTGATGGAGAGAATGGAATCTGCTCTACCCACCCAGAAAAGCTACCAGGAGTTAACAAAGAAGGACAGATCCGCCACTTTTTTCACCGACCCTCAAAGGCCTATACCACCGGAACCAGGAAGCGAAGGAAGGTTCACACCGAAGAAGATGGAAGCGAGACAAGATGGCACAAAACGGGCAAGACAAGGCCAGTCCTAGCCAATGGAGCAGTCAAGGGTTTCAAAAAGATCTTGGTCCTCTACACCAACTACGGCAGGCAAAGGAAGCCCGAGAAGACGAATTGGGTGATGCACCAGTACCACCTTGGCAACAATGAAGAAGAAAAAGATGGGGAGCTAGTGCTATCTAAGGTCTTTTACCAAACACAACCTAGGCAATGTGGTACTGGCACTCCAAGTATCAGAGATGGTGGTCCTCCATTGTTGAATCCATTTGATAGCCATCATTATAAAGGTCAAGTGAATATTCGTAGTGGCCAAGATGGGATTCCTCTTCCTCTTCCTCCAAAGAAGGCTGGTGTTATGGAGTATTACAATCATAATCATCCTGGTCCTTTTATGAACTATGAGCATCCTCATCTAATTCAAGGAGGCCAGAATAGGGAAATCCCAGCTCAACTAATTCCTAACATGGTTCTTCAAGGTGACGGGTCTTCGTTGTTTCGATACAATGCTGCAGATACAAGCAAAGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

333

Amino Acids

37.33

Weight (kDa)

7.02

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	63 - 202	1e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	2 cut(s)	200, 364
AcoI	YGGCCR	2 cut(s)	133, 775
AcsI	RAATTY	3 cut(s)	165, 200, 287
AfaI	GTAC	2 cut(s)	599, 685
AfiI	CCNNNNNNNGG	3 cut(s)	131, 417, 901
AgsI	TTSAA	6 cut(s)	152, 230, 523, 727, 887, 941
AjnI	CCWGG	5 cut(s)	156, 216, 346, 416, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	4 cut(s)	268, 343, 637, 914
AluI	AGCT	4 cut(s)	268, 343, 637, 914
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	200, 364
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	5 cut(s)	133, 399, 488, 775, 892
ApeKI	GCWGC	2 cut(s)	41, 974
ApoI	RAATTY	3 cut(s)	165, 200, 287
AspA2I	CCTAGG	1 cut(s)	671
AspS9I	GGNCC	4 cut(s)	214, 535, 713, 851
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	4 cut(s)	208, 377, 598, 956
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	4 cut(s)	214, 535, 713, 851
AvrII	CCTAGG	1 cut(s)	671
BalI	TGGCCA	2 cut(s)	135, 777
BbsI	GAAGAC	2 cut(s)	581, 945
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	53, 961
BccI	CCATC	7 cut(s)	299, 443, 459, 623, 701, 750, 776
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	5 cut(s)	158, 218, 348, 418, 849
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	3 cut(s)	497, 638, 672
BfmI	CTRYAG	2 cut(s)	141, 975
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	2 cut(s)	42, 975
BlnI	CCTAGG	1 cut(s)	671
BlsI	GCNGC	2 cut(s)	43, 976
Bme1390I	CCNGG	6 cut(s)	158, 180, 218, 348, 418, 849
Bme18I	GGWCC	4 cut(s)	214, 535, 713, 851
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	4 cut(s)	214, 535, 713, 851
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	6 cut(s)	158, 180, 218, 348, 418, 849
BmsI	GCATC	2 cut(s)	579, 880
BpiI	GAAGAC	2 cut(s)	581, 945
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	604, 671
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 417, 901
Bse1I	ACTGG	3 cut(s)	491, 595, 691
Bse3DI	GCAATG	1 cut(s)	683
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	5 cut(s)	158, 218, 348, 418, 849
BseDI	CCNNGG	2 cut(s)	604, 671
BseGI	GGATG	3 cut(s)	271, 844, 871
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	131, 417, 901
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	27, 95
BseNI	ACTGG	3 cut(s)	491, 595, 691
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	53, 961
BseYI	CCCAGC	1 cut(s)	910
BshFI	GGCC	5 cut(s)	135, 401, 490, 777, 894
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	179, 411
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	131, 417, 901
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	5 cut(s)	135, 401, 490, 777, 894
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	205, 369, 528
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	5 cut(s)	135, 401, 490, 777, 894
BspCNI	CTCAG	2 cut(s)	26, 94
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	2 cut(s)	200, 364
BsrDI	GCAATG	1 cut(s)	683
BsrI	ACTGG	3 cut(s)	491, 595, 691
BssECI	CCNNGG	2 cut(s)	604, 671
BssMI	GATC	3 cut(s)	205, 369, 528
BssT1I	CCWWGG	2 cut(s)	604, 671
Bst2UI	CCWGG	5 cut(s)	158, 218, 348, 418, 849
Bst6I	CTCTTC	4 cut(s)	18, 27, 798, 804
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	4 cut(s)	13, 81, 90, 648
BstF5I	GGATG	3 cut(s)	271, 844, 871
BstKTI	GATC	3 cut(s)	208, 372, 531
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	3 cut(s)	205, 369, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 565
BstNI	CCWGG	5 cut(s)	158, 218, 348, 418, 849
BstSCI	CCNGG	6 cut(s)	156, 178, 216, 346, 416, 847
BstSFI	CTRYAG	2 cut(s)	141, 975
BstV1I	GCAGC	2 cut(s)	53, 961
BstV2I	GAAGAC	2 cut(s)	581, 945
BstX2I	RGATCY	2 cut(s)	369, 528
BstYI	RGATCY	2 cut(s)	369, 528
BsuRI	GGCC	5 cut(s)	135, 401, 490, 777, 894
BtsCI	GGATG	3 cut(s)	271, 844, 871
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	557
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	4 cut(s)	214, 535, 713, 851
Csp6I	GTAC	2 cut(s)	598, 684
CviAII	CATG	4 cut(s)	6, 120, 170, 931
CviQI	GTAC	2 cut(s)	598, 684
DdeI	CTNAG	4 cut(s)	13, 81, 90, 648
DpnI	GATC	3 cut(s)	207, 371, 530
DpnII	GATC	3 cut(s)	205, 369, 528
EaeI	YGGCCR	2 cut(s)	133, 775
Eam1104I	CTCTTC	4 cut(s)	18, 27, 798, 804
EarI	CTCTTC	4 cut(s)	18, 27, 798, 804
EciI	GGCGGA	1 cut(s)	362
Eco130I	CCWWGG	2 cut(s)	604, 671
Eco147I	AGGCCT	1 cut(s)	401
Eco47I	GGWCC	4 cut(s)	214, 535, 713, 851
Eco88I	CYCGRG	1 cut(s)	569
EcoRI	GAATTC	2 cut(s)	165, 287
EcoRII	CCWGG	5 cut(s)	156, 216, 346, 416, 847
EcoT14I	CCWWGG	2 cut(s)	604, 671
ErhI	CCWWGG	2 cut(s)	604, 671
FaeI	CATG	4 cut(s)	9, 123, 173, 934
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	4 cut(s)	5, 119, 169, 930
Fnu4HI	GCNGC	2 cut(s)	42, 975
FokI	GGATG	3 cut(s)	258, 831, 858
Fsp4HI	GCNGC	2 cut(s)	42, 975
FspBI	CTAG	3 cut(s)	497, 638, 672
GluI	GCNGC	2 cut(s)	42, 975
GsaI	CCCAGC	1 cut(s)	914
HaeIII	GGCC	5 cut(s)	135, 401, 490, 777, 894
HapII	CCGG	2 cut(s)	179, 411
Hin1II	CATG	4 cut(s)	9, 123, 173, 934
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	223, 318, 727, 787
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	179, 411
HphI	GGTGA	4 cut(s)	208, 377, 598, 956
Hpy166II	GTNNAC	2 cut(s)	355, 436
Hpy188I	TCNGA	3 cut(s)	16, 210, 704
Hpy188III	TCNNGA	2 cut(s)	152, 170
Hpy8I	GTNNAC	2 cut(s)	355, 436
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	4 cut(s)	356, 420, 424, 805
HpyCH4V	TGCA	3 cut(s)	71, 592, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 565
HpyF3I	CTNAG	4 cut(s)	13, 81, 90, 648
Hsp92II	CATG	4 cut(s)	9, 123, 173, 934
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	205, 369, 528
LmnI	GCTCC	2 cut(s)	506, 634
Lsp1109I	GCAGC	2 cut(s)	53, 961
LweI	GCATC	2 cut(s)	579, 880
MaeI	CTAG	3 cut(s)	497, 638, 672
MaeIII	GTNAC	1 cut(s)	944
MalI	GATC	3 cut(s)	207, 371, 530
MboI	GATC	3 cut(s)	205, 369, 528
MflI	RGATCY	2 cut(s)	369, 528
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	2 cut(s)	135, 777
MluCI	AATT	6 cut(s)	165, 200, 287, 580, 882, 921
MluNI	TGGCCA	2 cut(s)	135, 777
MmeI	TCCRAC	1 cut(s)	233
Mox20I	TGGCCA	2 cut(s)	135, 777
MscI	TGGCCA	2 cut(s)	135, 777
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	2 cut(s)	135, 777
MspI	CCGG	2 cut(s)	179, 411
MspR9I	CCNGG	6 cut(s)	158, 180, 218, 348, 418, 849
MvaI	CCWGG	5 cut(s)	158, 218, 348, 418, 849
MwoI	GCNNNNNNNGC	2 cut(s)	506, 565
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	205, 369, 528
NlaIII	CATG	4 cut(s)	9, 123, 173, 934
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	944
PagI	TCATGA	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	401
PfeI	GAWTC	4 cut(s)	223, 318, 727, 787
PkrI	GCNGC	2 cut(s)	43, 976
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	5 cut(s)	156, 216, 346, 416, 847
PspFI	CCCAGC	1 cut(s)	910
PspGI	CCWGG	5 cut(s)	156, 216, 346, 416, 847
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	4 cut(s)	214, 535, 713, 851
PstI	CTGCAG	1 cut(s)	979
PsuI	RGATCY	2 cut(s)	369, 528
RsaI	GTAC	2 cut(s)	599, 685
RsaNI	GTAC	2 cut(s)	598, 684
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	42, 975
Sau3AI	GATC	3 cut(s)	205, 369, 528
Sau96I	GGNCC	4 cut(s)	214, 535, 713, 851
ScrFI	CCNGG	6 cut(s)	158, 180, 218, 348, 418, 849
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	579, 880
SfcI	CTRYAG	2 cut(s)	141, 975
SinI	GGWCC	4 cut(s)	214, 535, 713, 851
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	6 cut(s)	165, 200, 287, 580, 882, 921
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	3 cut(s)	497, 638, 672
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	6 cut(s)	156, 178, 216, 346, 416, 847
StyI	CCWWGG	2 cut(s)	604, 671
TaqI	TCGA	1 cut(s)	964
TasI	AATT	6 cut(s)	165, 200, 287, 580, 882, 921
TfiI	GAWTC	4 cut(s)	223, 318, 727, 787
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	2 cut(s)	41, 974
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	7 cut(s)	123, 158, 260, 280, 300, 630, 875
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	4 cut(s)	214, 535, 713, 851
XapI	RAATTY	3 cut(s)	165, 200, 287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmaJI	CCTAGG	1 cut(s)	671
XspI	CTAG	3 cut(s)	497, 638, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.