Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

2574049 .. 2576136

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACATGGTGCAATGACTCAGACGACGAGAGGGCCATTCAGATTATCACCCCTCCTCCTCCTCCTCCTCCTCCTTCTCATAACAATAACGAATTTCGGAACATAACATGCCCTTCTTGTGGCCACCACATAGAATTCCAAGACCAGGCAGGGATTCATGATTTGCCTGGACTACCAGCAGGGGTGAAATTTGATCCAACTGACCAAGAAATTCTTCAACACTTGGAGGCAAAAGTGCTGTCTGATACCAGAAAGCTTCATCCTCTCATTGATGAATTCATACCAACCCTTGAGGGGGAGAATGGGATTTGCTATACTCACCCAGAAAAGCTACCAGGAGTGAACAAAGATGGACAAATCCGGCACTTCTTTCACCGGCCCTCCAAGGCATACACAACCGGGACTCGAAAGCGAAGGAAGGTTCACACCGAAGAAGATGGAAGCGAGACGAGGTGGCACAAGACAGGGAAGACAAGGCCAGTCCTTCTTGGTGGAGCAGTTAAGGGTTTCAAGAAGATCCTGGTCCTCTACACCAACTACGGAAGGCAAAGGAAGCCTGAAAAGACCAATTGGGTGATGCACCAATACCACCTTGGCAACAACGAAGAAGAGAAAGATGGGGAGCTGGTGGTCTCAAAAGTCTTTTACCAAACACAGCCCAGGCAATGTGGTTCAAGCGTCAAAGATGTTCCAATGTTTGATCACCACAAAGGTGTGAATATAAGAAGTGGGCATGGGCATGATCCTCTTCCTATAGCAAAGAAGGCTGGCCTTGTGGAGTATTATAATCCTGGAGGAGGTTTTATTAATTATGATCACCATAATCTTCATAACCAGGGGGGACATAATAGAGAAAGCCCACCTCAACTAATCCCGAATTTAGTTGTCCAAGGTGACGGGTCTTCGTTTATTCGATTAACTGCAGATGCAAGCAAAGGAAAGCTTGAGAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

319

Amino Acids

35.87

Weight (kDa)

8.47

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AclWI	GGATC	3 cut(s)	188, 511, 737
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	6 cut(s)	92, 134, 188, 210, 275, 877
AfiI	CCNNNNNNNGG	5 cut(s)	119, 145, 294, 295, 797
AgsI	TTSAA	3 cut(s)	218, 511, 675
AjnI	CCWGG	7 cut(s)	144, 166, 334, 519, 659, 790, 834
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AleI	CACNNNNGTG	1 cut(s)	711
AluBI	AGCT	4 cut(s)	256, 331, 625, 943
AluI	AGCT	4 cut(s)	256, 331, 625, 943
Alw26I	GTCTC	2 cut(s)	440, 637
AlwI	GGATC	3 cut(s)	188, 511, 737
AoxI	GGCC	5 cut(s)	33, 121, 377, 476, 769
ApoI	RAATTY	6 cut(s)	92, 134, 188, 210, 275, 877
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	33, 378, 523
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	8 cut(s)	40, 196, 311, 365, 586, 695, 809, 905
AvaII	GGWCC	1 cut(s)	523
BalI	TGGCCA	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	476, 894
BccI	CCATC	3 cut(s)	344, 431, 611
BciT130I	CCWGG	7 cut(s)	146, 168, 336, 521, 661, 792, 836
BclI	TGATCA	2 cut(s)	700, 814
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	440, 637
BfmI	CTRYAG	2 cut(s)	753, 921
Bme1390I	CCNGG	8 cut(s)	146, 168, 336, 400, 521, 661, 792, 836
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	33, 378, 523
BmrFI	CCNGG	8 cut(s)	146, 168, 336, 400, 521, 661, 792, 836
BmsI	GCATC	2 cut(s)	567, 916
BpiI	GAAGAC	2 cut(s)	476, 894
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	637
BsaJI	CCNNGG	5 cut(s)	384, 592, 659, 835, 889
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 365, 395
Bsc4I	CCNNNNNNNGG	5 cut(s)	119, 145, 294, 295, 797
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	2 cut(s)	19, 671
BseBI	CCWGG	7 cut(s)	146, 168, 336, 521, 661, 792, 836
BseDI	CCNNGG	5 cut(s)	384, 592, 659, 835, 889
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	5 cut(s)	119, 145, 294, 295, 797
BseMI	GCAATG	2 cut(s)	19, 671
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	7 cut(s)	45, 48, 51, 54, 57, 60, 810
BshFI	GGCC	5 cut(s)	35, 123, 379, 478, 771
BsiSI	CCGG	3 cut(s)	361, 376, 399
BslFI	GGGAC	2 cut(s)	415, 855
BslI	CCNNNNNNNGG	5 cut(s)	119, 145, 294, 295, 797
BsmAI	GTCTC	2 cut(s)	440, 637
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	2 cut(s)	415, 855
BsnI	GGCC	5 cut(s)	35, 123, 379, 478, 771
Bso31I	GGTCTC	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	193, 516, 700, 742, 814
BspANI	GGCC	5 cut(s)	35, 123, 379, 478, 771
BspCNI	CTCAG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	925
BspPI	GGATC	3 cut(s)	188, 511, 737
BspTNI	GGTCTC	1 cut(s)	637
BsrDI	GCAATG	2 cut(s)	19, 671
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	5 cut(s)	384, 592, 659, 835, 889
BssMI	GATC	5 cut(s)	193, 516, 700, 742, 814
BssT1I	CCWWGG	3 cut(s)	384, 592, 889
Bst2UI	CCWGG	7 cut(s)	146, 168, 336, 521, 661, 792, 836
Bst6I	CTCTTC	2 cut(s)	603, 753
BstC8I	GCNNGC	2 cut(s)	769, 931
BstDEI	CTNAG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	795
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	5 cut(s)	196, 519, 703, 745, 817
BstMAI	GTCTC	2 cut(s)	440, 637
BstMBI	GATC	5 cut(s)	193, 516, 700, 742, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 764
BstNI	CCWGG	7 cut(s)	146, 168, 336, 521, 661, 792, 836
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	8 cut(s)	144, 166, 334, 398, 519, 659, 790, 834
BstSFI	CTRYAG	2 cut(s)	753, 921
BstV2I	GAAGAC	2 cut(s)	476, 894
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BsuRI	GGCC	5 cut(s)	35, 123, 379, 478, 771
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	769, 931
CciI	TCATGA	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	3 cut(s)	33, 378, 523
CseI	GACGC	1 cut(s)	667
CviAII	CATG	5 cut(s)	6, 108, 158, 734, 740
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	5 cut(s)	195, 518, 702, 744, 816
DpnII	GATC	5 cut(s)	193, 516, 700, 742, 814
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	603, 753
EarI	CTCTTC	2 cut(s)	603, 753
Eco130I	CCWWGG	3 cut(s)	384, 592, 889
Eco31I	GGTCTC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	795
EcoRI	GAATTC	2 cut(s)	134, 275
EcoRII	CCWGG	7 cut(s)	144, 166, 334, 519, 659, 790, 834
EcoT14I	CCWWGG	3 cut(s)	384, 592, 889
ErhI	CCWWGG	3 cut(s)	384, 592, 889
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	5 cut(s)	9, 111, 161, 737, 743
FalI	AAGNNNNNCTT	3 cut(s)	198, 230, 927
FaqI	GGGAC	2 cut(s)	415, 855
FatI	CATG	5 cut(s)	5, 107, 157, 733, 739
FbaI	TGATCA	2 cut(s)	700, 814
FokI	GGATG	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	5 cut(s)	35, 123, 379, 478, 771
HapII	CCGG	3 cut(s)	361, 376, 399
HgaI	GACGC	1 cut(s)	667
Hin1II	CATG	5 cut(s)	9, 111, 161, 737, 743
HindIII	AAGCTT	2 cut(s)	254, 941
HinfI	GANTC	3 cut(s)	17, 154, 403
HpaII	CCGG	3 cut(s)	361, 376, 399
HphI	GGTGA	8 cut(s)	40, 196, 311, 365, 586, 695, 809, 905
Hpy166II	GTNNAC	2 cut(s)	343, 424
Hpy188I	TCNGA	4 cut(s)	22, 42, 99, 244
Hpy188III	TCNNGA	3 cut(s)	158, 511, 874
Hpy8I	GTNNAC	2 cut(s)	343, 424
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	7 cut(s)	84, 123, 408, 412, 494, 537, 757
HpyCH4V	TGCA	4 cut(s)	12, 580, 923, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 764
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	5 cut(s)	9, 111, 161, 737, 743
Ksp22I	TGATCA	2 cut(s)	700, 814
Kzo9I	GATC	5 cut(s)	193, 516, 700, 742, 814
LmnI	GCTCC	2 cut(s)	494, 622
LweI	GCATC	2 cut(s)	567, 916
MaeIII	GTNAC	1 cut(s)	893
MalI	GATC	5 cut(s)	195, 518, 702, 744, 816
MboI	GATC	5 cut(s)	193, 516, 700, 742, 814
MfeI	CAATTG	1 cut(s)	568
MflI	RGATCY	1 cut(s)	516
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	8 cut(s)	92, 134, 188, 210, 275, 568, 808, 877
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	11, 397
MmeI	TCCRAC	1 cut(s)	221
Mox20I	TGGCCA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	3 cut(s)	501, 807, 917
MslI	CAYNNNNRTG	2 cut(s)	711, 738
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	3 cut(s)	361, 376, 399
MspR9I	CCNGG	8 cut(s)	146, 168, 336, 400, 521, 661, 792, 836
MunI	CAATTG	1 cut(s)	568
MvaI	CCWGG	7 cut(s)	146, 168, 336, 521, 661, 792, 836
MwoI	GCNNNNNNNGC	2 cut(s)	553, 764
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	5 cut(s)	193, 516, 700, 742, 814
NlaIII	CATG	5 cut(s)	9, 111, 161, 737, 743
NmuCI	GTSAC	1 cut(s)	893
NspI	RCATGY	1 cut(s)	111
OliI	CACNNNNGTG	1 cut(s)	711
PagI	TCATGA	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	154
PfoI	TCCNGGA	1 cut(s)	790
PleI	GAGTC	2 cut(s)	11, 397
PpsI	GAGTC	2 cut(s)	11, 397
PshBI	ATTAAT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	786
Psp6I	CCWGG	7 cut(s)	144, 166, 334, 519, 659, 790, 834
PspGI	CCWGG	7 cut(s)	144, 166, 334, 519, 659, 790, 834
PspPI	GGNCC	3 cut(s)	33, 378, 523
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	1 cut(s)	516
RseI	CAYNNNNRTG	2 cut(s)	711, 738
SaqAI	TTAA	3 cut(s)	501, 807, 917
Sau3AI	GATC	5 cut(s)	193, 516, 700, 742, 814
Sau96I	GGNCC	3 cut(s)	33, 378, 523
SchI	GAGTC	2 cut(s)	11, 397
ScrFI	CCNGG	8 cut(s)	146, 168, 336, 400, 521, 661, 792, 836
SfaNI	GCATC	2 cut(s)	567, 916
SfcI	CTRYAG	2 cut(s)	753, 921
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	711, 738
SmlI	CTYRAG	2 cut(s)	290, 944
SmoI	CTYRAG	2 cut(s)	290, 944
Sse9I	AATT	8 cut(s)	92, 134, 188, 210, 275, 568, 808, 877
StyD4I	CCNGG	8 cut(s)	144, 166, 334, 398, 519, 659, 790, 834
StyI	CCWWGG	3 cut(s)	384, 592, 889
TaqI	TCGA	2 cut(s)	406, 913
TasI	AATT	8 cut(s)	92, 134, 188, 210, 275, 568, 808, 877
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	501, 807, 917
Tru9I	TTAA	3 cut(s)	501, 807, 917
TseFI	GTSAC	1 cut(s)	893
Tsp45I	GTSAC	1 cut(s)	893
TspDTI	ATGAA	5 cut(s)	146, 248, 268, 288, 818
TspGWI	ACGGA	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	807
XagI	CCTNNNNNAGG	1 cut(s)	795
XapI	RAATTY	6 cut(s)	92, 134, 188, 210, 275, 877
XceI	RCATGY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.