Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Reverse (-)

88763562 .. 88765872

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACATGGCACTCAGATGACGATGATGAAGAAGAGAGGGCAATTCAGTCAGTTGCTCCCTCTTCTGCAACTAATTATCCTCAATCTAAGAATAATAACAACAATAATGAAATATCATGCCCATCTTGTGGCCACCCTATAGATATTCAAGACCAGGCTGGAATTCATGATTTGCCGGGACTACCAGCAGGGGTGAAATTTGATCCGACGGACCAAGAAATTCTTCAACATTTGGAGGCAAAAGTGCTCACTGATACCGGAAAGCTTCATCCACTCATTGATGAATTCATACCAACGCTTGAAGGAGAGAATGGAATTTGCTCTACCCACCCAGAAAAGCTACCAGGAGTGAACAAAGAAGGACAGATCCGCCACTTCTTTCACCGACCCTCAAAGGCCTACACCACCGGAACTAGGAAGAGAAGGAAGGTTCACACCGAAGAAGATGGAAGCGAGACGAGATGGCACAAAACAGGCAAGACAAGGCCGGTCCTCACCAACGGAGCAGTCAAGGGTTTCAAAAAGATCTTAGTCCTCTATACCAACTACGGCAGGCAAAGGAAGCCCGAGAAGACGAATTGGGTGATGCACCAGTACCACCTTGGTAACAATGAAGAAGAAAAGGATGGGGAGCTAGTGCTATCTAAGGTCTTTTACCAAACGCAACCTAGGCAATGTGGTATGGGCACTCCAGGCATCAGAGATGGTGGTCCTCCATTGTTGAATCCATTTGATAGTCATCATCATAAAGGTCATGTGAATATTCGAAGTGGGCAAGATGGTAATTCTCTTCCTCTTCCTCTTCCTCTTCCTCTAAAGAAAGCTGGTGTTGTGGAATATTACAATCATAACCAACCTGGTCCTTTCATGAACTATGATCATCCACATCTGATTCAAGGAGGCCAGAATAGGGATATTCCAGCTCAACTAATTCCTAACATGGTTCTACAAGGTGACGGGTCATCGTTGTTTCGATATAACACTGCAGATACAAGCAAAGGAAAGCTAATTGAGAGGAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

341

Amino Acids

38.24

Weight (kDa)

7.04

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	62 - 201	2.7e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	2 cut(s)	197, 361
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	5 cut(s)	162, 197, 219, 284, 315
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	3 cut(s)	128, 414, 910
AgsI	TTSAA	6 cut(s)	149, 227, 302, 520, 724, 896
AjnI	CCWGG	4 cut(s)	153, 343, 691, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	6 cut(s)	265, 340, 634, 824, 923, 1006
AluI	AGCT	6 cut(s)	265, 340, 634, 824, 923, 1006
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	197, 361
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	4 cut(s)	130, 396, 485, 901
ApoI	RAATTY	5 cut(s)	162, 197, 219, 284, 315
Asp700I	GAANNNNTTC	1 cut(s)	222
AspA2I	CCTAGG	1 cut(s)	668
AspS9I	GGNCC	4 cut(s)	211, 490, 710, 860
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	5 cut(s)	205, 374, 487, 595, 965
AsuII	TTCGAA	1 cut(s)	766
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	4 cut(s)	211, 490, 710, 860
AvrII	CCTAGG	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	689
BalI	TGGCCA	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	249
BccI	CCATC	6 cut(s)	130, 440, 456, 620, 698, 773
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	4 cut(s)	155, 345, 693, 858
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	3 cut(s)	414, 635, 669
BfmI	CTRYAG	2 cut(s)	138, 984
BglII	AGATCT	1 cut(s)	525
BlnI	CCTAGG	1 cut(s)	668
Bme1390I	CCNGG	5 cut(s)	155, 177, 345, 693, 858
Bme18I	GGWCC	4 cut(s)	211, 490, 710, 860
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	4 cut(s)	211, 490, 710, 860
BmrFI	CCNGG	5 cut(s)	155, 177, 345, 693, 858
BmsI	GCATC	2 cut(s)	576, 705
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	601, 668
BsaWI	WCCGGW	2 cut(s)	257, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 414, 910
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	1 cut(s)	680
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	4 cut(s)	155, 345, 693, 858
BseDI	CCNNGG	2 cut(s)	601, 668
BseGI	GGATG	3 cut(s)	268, 631, 880
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	3 cut(s)	128, 414, 910
BseMI	GCAATG	1 cut(s)	680
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	592
BseSI	GKGCMC	1 cut(s)	689
BshFI	GGCC	4 cut(s)	132, 398, 487, 903
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	4 cut(s)	176, 258, 408, 488
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	128, 414, 910
BsmAI	GTCTC	1 cut(s)	449
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	4 cut(s)	132, 398, 487, 903
BsoBI	CYCGRG	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	766
Bsp1286I	GDGCHC	2 cut(s)	249, 689
Bsp143I	GATC	4 cut(s)	202, 366, 525, 877
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	4 cut(s)	132, 398, 487, 903
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	2 cut(s)	166, 867
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	2 cut(s)	197, 361
BspT104I	TTCGAA	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	680
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	601, 668
BssMI	GATC	4 cut(s)	202, 366, 525, 877
BssT1I	CCWWGG	2 cut(s)	601, 668
Bst2UI	CCWGG	4 cut(s)	155, 345, 693, 858
Bst6I	CTCTTC	7 cut(s)	27, 67, 413, 795, 801, 807, 813
BstBI	TTCGAA	1 cut(s)	766
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	4 cut(s)	13, 87, 529, 645
BstF5I	GGATG	3 cut(s)	268, 631, 880
BstKTI	GATC	4 cut(s)	205, 369, 528, 880
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	4 cut(s)	202, 366, 525, 877
BstMWI	GCNNNNNNNGC	3 cut(s)	562, 670, 693
BstNI	CCWGG	4 cut(s)	155, 345, 693, 858
BstSCI	CCNGG	5 cut(s)	153, 175, 343, 691, 856
BstSFI	CTRYAG	2 cut(s)	138, 984
BstSLI	GKGCMC	1 cut(s)	689
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	2 cut(s)	366, 525
BstYI	RGATCY	2 cut(s)	366, 525
BsuRI	GGCC	4 cut(s)	132, 398, 487, 903
BtsCI	GGATG	3 cut(s)	268, 631, 880
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	2 cut(s)	249, 981
Cac8I	GCNNGC	1 cut(s)	554
CciI	TCATGA	2 cut(s)	166, 867
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	4 cut(s)	211, 490, 710, 860
CsiI	ACCWGGT	1 cut(s)	856
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	6 cut(s)	6, 117, 167, 755, 868, 940
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	4 cut(s)	13, 87, 529, 645
DpnI	GATC	4 cut(s)	204, 368, 527, 879
DpnII	GATC	4 cut(s)	202, 366, 525, 877
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	7 cut(s)	27, 67, 413, 795, 801, 807, 813
EarI	CTCTTC	7 cut(s)	27, 67, 413, 795, 801, 807, 813
EciI	GGCGGA	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	601, 668
Eco147I	AGGCCT	1 cut(s)	398
Eco47I	GGWCC	4 cut(s)	211, 490, 710, 860
Eco88I	CYCGRG	1 cut(s)	566
EcoRI	GAATTC	2 cut(s)	162, 284
EcoRII	CCWGG	4 cut(s)	153, 343, 691, 856
EcoT14I	CCWWGG	2 cut(s)	601, 668
ErhI	CCWWGG	2 cut(s)	601, 668
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	6 cut(s)	9, 120, 170, 758, 871, 943
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	6 cut(s)	5, 116, 166, 754, 867, 939
FbaI	TGATCA	1 cut(s)	877
FokI	GGATG	3 cut(s)	255, 638, 867
FspBI	CTAG	3 cut(s)	414, 635, 669
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	4 cut(s)	132, 398, 487, 903
HapII	CCGG	4 cut(s)	176, 258, 408, 488
Hin1II	CATG	6 cut(s)	9, 120, 170, 758, 871, 943
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	724, 892
HpaII	CCGG	4 cut(s)	176, 258, 408, 488
HphI	GGTGA	5 cut(s)	205, 374, 487, 595, 965
Hpy166II	GTNNAC	2 cut(s)	352, 433
Hpy188I	TCNGA	4 cut(s)	16, 207, 701, 891
Hpy188III	TCNNGA	3 cut(s)	149, 167, 868
Hpy8I	GTNNAC	2 cut(s)	352, 433
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	296, 353, 417, 421
HpyCH4V	TGCA	3 cut(s)	68, 589, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	562, 670, 693
HpyF3I	CTNAG	4 cut(s)	13, 87, 529, 645
Hsp92II	CATG	6 cut(s)	9, 120, 170, 758, 871, 943
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	4 cut(s)	202, 366, 525, 877
LmnI	GCTCC	3 cut(s)	61, 503, 631
LweI	GCATC	2 cut(s)	576, 705
MabI	ACCWGGT	1 cut(s)	856
MaeI	CTAG	3 cut(s)	414, 635, 669
MaeIII	GTNAC	2 cut(s)	605, 953
MalI	GATC	4 cut(s)	204, 368, 527, 879
MboI	GATC	4 cut(s)	202, 366, 525, 877
MflI	RGATCY	2 cut(s)	366, 525
MhlI	GDGCHC	2 cut(s)	249, 689
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	230
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	4 cut(s)	176, 258, 408, 488
MspR9I	CCNGG	5 cut(s)	155, 177, 345, 693, 858
MvaI	CCWGG	4 cut(s)	155, 345, 693, 858
MwoI	GCNNNNNNNGC	3 cut(s)	562, 670, 693
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	4 cut(s)	202, 366, 525, 877
NlaIII	CATG	6 cut(s)	9, 120, 170, 758, 871, 943
NmuCI	GTSAC	1 cut(s)	953
NspV	TTCGAA	1 cut(s)	766
PagI	TCATGA	2 cut(s)	166, 867
PceI	AGGCCT	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	724, 892
PflMI	CCANNNNNTGG	1 cut(s)	128
Psp6I	CCWGG	4 cut(s)	153, 343, 691, 856
PspGI	CCWGG	4 cut(s)	153, 343, 691, 856
PspPI	GGNCC	4 cut(s)	211, 490, 710, 860
PstI	CTGCAG	1 cut(s)	988
PsuI	RGATCY	2 cut(s)	366, 525
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	202, 366, 525, 877
Sau96I	GGNCC	4 cut(s)	211, 490, 710, 860
ScrFI	CCNGG	5 cut(s)	155, 177, 345, 693, 858
SduI	GDGCHC	2 cut(s)	249, 689
SexAI	ACCWGGT	1 cut(s)	856
SfaNI	GCATC	2 cut(s)	576, 705
SfcI	CTRYAG	2 cut(s)	138, 984
SfuI	TTCGAA	1 cut(s)	766
SinI	GGWCC	4 cut(s)	211, 490, 710, 860
SmiMI	CAYNNNNRTG	1 cut(s)	15
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	1 cut(s)	370
SspI	AATATT	2 cut(s)	763, 839
SspMI	CTAG	3 cut(s)	414, 635, 669
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	5 cut(s)	153, 175, 343, 691, 856
StyI	CCWWGG	2 cut(s)	601, 668
TaqI	TCGA	2 cut(s)	766, 973
TfiI	GAWTC	2 cut(s)	724, 892
TscAI	CASTG	2 cut(s)	256, 988
TseFI	GTSAC	1 cut(s)	953
Tsp45I	GTSAC	1 cut(s)	953
TspDTI	ATGAA	9 cut(s)	42, 123, 155, 257, 277, 297, 627, 856, 884
TspGWI	ACGGA	2 cut(s)	224, 516
TspRI	CASTG	2 cut(s)	256, 988
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	4 cut(s)	211, 490, 710, 860
XapI	RAATTY	5 cut(s)	162, 197, 219, 284, 315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmaJI	CCTAGG	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	3 cut(s)	414, 635, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.