Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

40043776 .. 40045946

Gene Structure 2171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAATTTGCTACACTCATCCACATAAGTTGCCAGGTACATCCTCAATGGCCGGGTTTCATTGATTTTTCATGTCATATACATGATATATATGAATGGAATGATCTTATATACGTACTTTGTCACAATATTGGTATTATAAATGAACATGCAGGAGTTAGCAAAGATGGGCTGGTACGCCACTTCTTCCATCGACCTTCCAAGGCTTACACAACAGGATCTAGGAAAAGGAGAAAGGTGCACACTGATAGGGATAGCAGCGGCGAGGGGGGCGAGACGCGGTGGCACAAGACAGGCAAGACCAGACCAGTATTTGTTGGTGGCAAAGTGAAAGGGTACAAAAAGATACTTGTGCTCTACACAAACTATGGGAAGCAAAGAAAGCCTGAGAAAACCAACTGGGTAATGCACCAGTACCACCTTGGCAATAATGAAGAAGAGAAAGATGGAGAGCTTGTGGTCTCCAAGGTGTTCTACCAAACACAACCTAGACAATGTGGGAACTCAGGTATGAAGGACTTGATTAATAATAACTCTGCCAAATTGATGAAGGGACAAAGTGGGCACAATGAGGCACTTGTTCAGTATTGTAATAATGCTAATTCCTTCATATCCTTTGATCAAAATGGCCAAGATAGATCGAGCAGTAATCCTCAAATAATTCCTCATCATTTTCCTCTTCATGATGGGTCGTTTGTTTCTTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

236

Amino Acids

27.02

Weight (kDa)

9.21

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	57 - 141	2.8e-14	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccII	CGCG	1 cut(s)	280
AciI	CCGC	2 cut(s)	261, 280
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	2 cut(s)	50, 628
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	5 cut(s)	39, 117, 177, 338, 416
AgsI	TTSAA	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw21I	GWGCWC	2 cut(s)	243, 357
Alw26I	GTCTC	2 cut(s)	269, 466
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	2 cut(s)	50, 628
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	54
BaeGI	GKGCMC	2 cut(s)	243, 567
BalI	TGGCCA	1 cut(s)	630
Bbv12I	GWGCWC	2 cut(s)	243, 357
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	4 cut(s)	161, 198, 440, 680
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	269, 466
BfaI	CTAG	2 cut(s)	222, 489
BisI	GCNGC	2 cut(s)	259, 262
BlsI	GCNGC	2 cut(s)	260, 263
Bme1390I	CCNGG	2 cut(s)	35, 54
BmrFI	CCNGG	2 cut(s)	35, 54
BmrI	ACTGGG	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	201, 421, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bse1I	ACTGG	3 cut(s)	308, 404, 412
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	201, 421, 465
BseGI	GGATG	2 cut(s)	18, 40
BseMII	CTCAG	2 cut(s)	378, 519
BseNI	ACTGG	3 cut(s)	308, 404, 412
BseSI	GKGCMC	2 cut(s)	243, 567
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	52, 630
BsiHKAI	GWGCWC	2 cut(s)	243, 357
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	567
BsmAI	GTCTC	2 cut(s)	269, 466
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	2 cut(s)	52, 630
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	3 cut(s)	243, 357, 567
Bsp143I	GATC	4 cut(s)	103, 218, 619, 638
BspACI	CCGC	2 cut(s)	261, 280
BspANI	GGCC	2 cut(s)	52, 630
BspCNI	CTCAG	2 cut(s)	379, 518
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	682
BspPI	GGATC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	466
BsrI	ACTGG	3 cut(s)	308, 404, 412
BssECI	CCNNGG	3 cut(s)	201, 421, 465
BssMI	GATC	4 cut(s)	103, 218, 619, 638
BssT1I	CCWWGG	3 cut(s)	201, 421, 465
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	432, 684
BstBAI	YACGTR	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	387, 505
BstF5I	GGATG	2 cut(s)	18, 40
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	4 cut(s)	106, 221, 622, 641
BstMAI	GTCTC	2 cut(s)	269, 466
BstMBI	GATC	4 cut(s)	103, 218, 619, 638
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 382
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	33, 52
BstSLI	GKGCMC	2 cut(s)	243, 567
BstSNI	TACGTA	1 cut(s)	115
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	52, 630
BtsCI	GGATG	2 cut(s)	18, 40
BtsIMutI	CAGTG	1 cut(s)	243
CciI	TCATGA	1 cut(s)	682
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	5 cut(s)	38, 116, 176, 337, 415
CspCI	CAANNNNNGTGG	2 cut(s)	11, 46
CviAII	CATG	4 cut(s)	72, 83, 149, 683
CviJI	RGCY	6 cut(s)	52, 172, 206, 385, 454, 630
CviKI_1	RGCY	6 cut(s)	52, 172, 206, 385, 454, 630
CviQI	GTAC	5 cut(s)	38, 116, 176, 337, 415
DdeI	CTNAG	2 cut(s)	387, 505
DpnI	GATC	4 cut(s)	105, 220, 621, 640
DpnII	GATC	4 cut(s)	103, 218, 619, 638
EaeI	YGGCCR	2 cut(s)	50, 628
Eam1104I	CTCTTC	2 cut(s)	432, 684
EarI	CTCTTC	2 cut(s)	432, 684
Eco105I	TACGTA	1 cut(s)	115
Eco130I	CCWWGG	3 cut(s)	201, 421, 465
Eco31I	GGTCTC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	3 cut(s)	201, 421, 465
ErhI	CCWWGG	3 cut(s)	201, 421, 465
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	75, 86, 152, 686
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	4 cut(s)	71, 82, 148, 682
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	2 cut(s)	259, 262
FokI	GGATG	2 cut(s)	5, 27
Fsp4HI	GCNGC	2 cut(s)	259, 262
FspBI	CTAG	2 cut(s)	222, 489
GluI	GCNGC	2 cut(s)	259, 262
HaeIII	GGCC	2 cut(s)	52, 630
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	286
Hin1II	CATG	4 cut(s)	75, 86, 152, 686
HpaII	CCGG	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	207, 508, 544, 616
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	152, 241, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 382
HpyF3I	CTNAG	2 cut(s)	387, 505
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	75, 86, 152, 686
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	103, 218, 619, 638
Lsp1109I	GCAGC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	222, 489
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	4 cut(s)	105, 220, 621, 640
MboI	GATC	4 cut(s)	103, 218, 619, 638
MboII	GAAGA	4 cut(s)	178, 446, 449, 671
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	3 cut(s)	243, 357, 567
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	4 cut(s)	5, 542, 601, 660
MluNI	TGGCCA	1 cut(s)	630
MnlI	CCTC	6 cut(s)	54, 259, 565, 663, 675, 687
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	35, 54
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	270, 382
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	4 cut(s)	103, 218, 619, 638
NlaIII	CATG	4 cut(s)	75, 86, 152, 686
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	152
PagI	TCATGA	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	260, 263
Ppu21I	YACGTR	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	525
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	5 cut(s)	39, 117, 177, 338, 416
RsaNI	GTAC	5 cut(s)	38, 116, 176, 337, 415
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	259, 262
Sau3AI	GATC	4 cut(s)	103, 218, 619, 638
ScrFI	CCNGG	2 cut(s)	35, 54
SduI	GDGCHC	3 cut(s)	243, 357, 567
SetI	ASST	9 cut(s)	39, 117, 199, 240, 423, 456, 471, 490, 511
SmiMI	CAYNNNNRTG	1 cut(s)	81
SnaBI	TACGTA	1 cut(s)	115
Sse9I	AATT	4 cut(s)	5, 542, 601, 660
SsiI	CCGC	2 cut(s)	261, 280
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	2 cut(s)	222, 489
StyD4I	CCNGG	2 cut(s)	33, 52
StyI	CCWWGG	3 cut(s)	201, 421, 465
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	193, 641
TasI	AATT	4 cut(s)	5, 542, 601, 660
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	9 cut(s)	49, 60, 108, 159, 447, 527, 563, 598, 671
TspRI	CASTG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XspI	CTAG	2 cut(s)	222, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.