Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040267.1

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Forward (+)

13685 .. 16665

Gene Structure 2981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040267.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgactcactgcaatgatcttggtcaggaagaccaaacaatcattgccaaagatggcctaaccaccagaacatgtccttcatgtggttatcagatcaaataccaacaacaggccggaattcaaaacttgcccgggctgccagcgggagtgaagtttgatcctacggatcaagaggtgcttcaacatttggaggggaaggtctggagtagtactgatattgctgcaggcaataagctccaccatcatcctctgatagatcagttcatccctacaattgaaggggagaatggaatttgctacactcatccacataagttgccaggagttagcaaagatgggctggtacgccacttcttccatcgaccttccaaagcttacacaacaggatctaggaaaaggagaaaggtgcacactgatagggatagcagcggcgagggaggcgagacgcggtggcacaagacaggcaagaccagaccagtatttgttggtggcaaagtgaaagggtacaaaaagatacttgtgctctacacaaactatgggaagcaaagaaagcctgagaaaaccaactgggtaatgcaccagtaccaccttggcaataatgaagaagagaaagatggagagcttgtggtctccaaggtgttctaccaaacacaacctagacaatgtgggaactcaggtatgaaggacttgattaataataactctgccaaattgatgaagggacaaagtgggcacaatgaggcacttgttcagtattgtaataatgctaattccttcatatcctttgatcaaaatggccaagatagatcgagcactgttggtggcggtctagtaggtgtggagctttctgcagagcttcgtgactttgtaattatccattactgtaatggaagcaagccatcatatttgacacatacgtttctgcatgtgattgatggtattccgattggtgtattgatcaagttaactattatggacttggtttggtcttacaggtttgaaacaagatcaattacaacatttgctggagaaaagttctccagagatggtgttcaagtaaaaacaggtccccaggttgtaaaagtagctgttgcagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

366

Amino Acids

40.79

Weight (kDa)

9.13

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	448
AciI	CCGC	4 cut(s)	143, 429, 448, 825
AclWI	GGATC	3 cut(s)	152, 174, 394
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	117, 291
AfaI	GTAC	4 cut(s)	211, 345, 506, 584
AfiI	CCNNNNNNNGG	2 cut(s)	83, 109
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	122, 182, 278, 1001, 1055
AjnI	CCWGG	2 cut(s)	319, 1071
AluBI	AGCT	6 cut(s)	235, 374, 622, 844, 856, 1088
AluI	AGCT	6 cut(s)	235, 374, 622, 844, 856, 1088
Alw21I	GWGCWC	3 cut(s)	411, 525, 815
Alw26I	GTCTC	2 cut(s)	437, 634
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	152, 174, 394
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	3 cut(s)	55, 111, 796
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	136, 221, 426
ApoI	RAATTY	2 cut(s)	117, 291
AseI	ATTAAT	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	1067
AsuC2I	CCSGG	2 cut(s)	132, 133
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	1067
BaeGI	GKGCMC	2 cut(s)	411, 735
BalI	TGGCCA	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	3 cut(s)	411, 525, 815
BbvI	GCAGC	3 cut(s)	123, 208, 438
BccI	CCATC	8 cut(s)	47, 249, 329, 366, 608, 907, 929, 1040
BciT130I	CCWGG	2 cut(s)	321, 1073
BclI	TGATCA	2 cut(s)	787, 957
BcnI	CCSGG	2 cut(s)	132, 133
BcoDI	GTCTC	2 cut(s)	437, 634
BfaI	CTAG	3 cut(s)	390, 657, 830
BfmI	CTRYAG	2 cut(s)	222, 849
BisI	GCNGC	4 cut(s)	137, 222, 427, 430
BlsI	GCNGC	4 cut(s)	138, 223, 428, 431
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	4 cut(s)	132, 133, 321, 1073
Bme18I	GGWCC	1 cut(s)	1067
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	1067
BmiI	GGNNCC	1 cut(s)	1069
BmrFI	CCNGG	4 cut(s)	132, 133, 321, 1073
BmrI	ACTGGG	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	3 cut(s)	223, 1024, 1047
BpuMI	CCSGG	2 cut(s)	132, 133
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	4 cut(s)	131, 589, 633, 1071
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 109
Bse1I	ACTGG	3 cut(s)	476, 572, 580
Bse3DI	GCAATG	2 cut(s)	19, 42
BseBI	CCWGG	2 cut(s)	321, 1073
BseDI	CCNNGG	4 cut(s)	131, 589, 633, 1071
BseGI	GGATG	3 cut(s)	244, 264, 304
BseLI	CCNNNNNNNGG	2 cut(s)	83, 109
BseMI	GCAATG	2 cut(s)	19, 42
BseMII	CTCAG	2 cut(s)	546, 687
BseNI	ACTGG	3 cut(s)	476, 572, 580
BseSI	GKGCMC	2 cut(s)	411, 735
BseXI	GCAGC	3 cut(s)	123, 208, 438
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	57, 113, 798
BsiHKAI	GWGCWC	3 cut(s)	411, 525, 815
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	114, 132
BslFI	GGGAC	2 cut(s)	735, 1053
BslI	CCNNNNNNNGG	2 cut(s)	83, 109
BsmAI	GTCTC	2 cut(s)	437, 634
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	2 cut(s)	735, 1053
BsnI	GGCC	3 cut(s)	57, 113, 798
Bso31I	GGTCTC	1 cut(s)	634
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	4 cut(s)	411, 525, 735, 815
BspACI	CCGC	4 cut(s)	143, 429, 448, 825
BspANI	GGCC	3 cut(s)	57, 113, 798
BspCNI	CTCAG	2 cut(s)	547, 686
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	1069
BspMAI	CTGCAG	2 cut(s)	226, 853
BspPI	GGATC	3 cut(s)	152, 174, 394
BspTNI	GGTCTC	1 cut(s)	634
BsrDI	GCAATG	2 cut(s)	19, 42
BsrI	ACTGG	3 cut(s)	476, 572, 580
BssECI	CCNNGG	4 cut(s)	131, 589, 633, 1071
BssT1I	CCWWGG	2 cut(s)	589, 633
Bst2UI	CCWGG	2 cut(s)	321, 1073
Bst4CI	ACNGT	2 cut(s)	817, 884
Bst6I	CTCTTC	1 cut(s)	600
BstC8I	GCNNGC	3 cut(s)	141, 226, 896
BstDEI	CTNAG	2 cut(s)	555, 673
BstF5I	GGATG	3 cut(s)	244, 264, 304
BstFNI	CGCG	1 cut(s)	448
BstMAI	GTCTC	2 cut(s)	437, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
BstNI	CCWGG	2 cut(s)	321, 1073
BstNSI	RCATGY	2 cut(s)	75, 929
BstSCI	CCNGG	4 cut(s)	130, 131, 319, 1071
BstSFI	CTRYAG	2 cut(s)	222, 849
BstSLI	GKGCMC	2 cut(s)	411, 735
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	3 cut(s)	123, 208, 438
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	57, 113, 798
BtsCI	GGATG	3 cut(s)	244, 264, 304
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	3 cut(s)	7, 411, 813
Cac8I	GCNNGC	3 cut(s)	141, 226, 896
Cfr13I	GGNCC	1 cut(s)	1067
Cfr9I	CCCGGG	1 cut(s)	131
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	4 cut(s)	210, 344, 505, 583
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	3 cut(s)	72, 81, 926
CviQI	GTAC	4 cut(s)	210, 344, 505, 583
DdeI	CTNAG	2 cut(s)	555, 673
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	2 cut(s)	589, 633
Eco31I	GGTCTC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	1067
Eco88I	CYCGRG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	319, 1071
EcoT14I	CCWWGG	2 cut(s)	589, 633
ErhI	CCWWGG	2 cut(s)	589, 633
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	3 cut(s)	75, 84, 929
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	2 cut(s)	735, 1053
FatI	CATG	3 cut(s)	71, 80, 925
FauI	CCCGC	1 cut(s)	136
FbaI	TGATCA	2 cut(s)	787, 957
Fnu4HI	GCNGC	4 cut(s)	137, 222, 427, 430
FokI	GGATG	3 cut(s)	231, 251, 291
Fsp4HI	GCNGC	4 cut(s)	137, 222, 427, 430
FspBI	CTAG	3 cut(s)	390, 657, 830
GluI	GCNGC	4 cut(s)	137, 222, 427, 430
GsuI	CTGGAG	3 cut(s)	223, 1024, 1047
HaeIII	GGCC	3 cut(s)	57, 113, 798
HapII	CCGG	2 cut(s)	114, 132
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	75, 84, 929
HincII	GTYRAC	1 cut(s)	966
HindII	GTYRAC	1 cut(s)	966
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	966
HpaII	CCGG	2 cut(s)	114, 132
Hpy166II	GTNNAC	2 cut(s)	409, 966
Hpy188I	TCNGA	3 cut(s)	93, 252, 945
Hpy188III	TCNNGA	5 cut(s)	26, 170, 202, 860, 1041
Hpy8I	GTNNAC	2 cut(s)	409, 966
HpyAV	CCTTC	7 cut(s)	87, 190, 272, 375, 676, 712, 784
HpyCH4III	ACNGT	2 cut(s)	817, 884
HpyCH4IV	ACGT	1 cut(s)	917
HpyCH4V	TGCA	7 cut(s)	12, 224, 409, 577, 851, 925, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
HpyF3I	CTNAG	2 cut(s)	555, 673
HpySE526I	ACGT	1 cut(s)	917
Hsp92II	CATG	3 cut(s)	75, 84, 929
Ksp22I	TGATCA	2 cut(s)	787, 957
KspAI	GTTAAC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	240, 841
Lsp1109I	GCAGC	3 cut(s)	123, 208, 438
MaeI	CTAG	3 cut(s)	390, 657, 830
MaeII	ACGT	1 cut(s)	917
MaeIII	GTNAC	1 cut(s)	860
MboII	GAAGA	4 cut(s)	41, 346, 614, 617
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	4 cut(s)	411, 525, 735, 815
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	7 cut(s)	117, 273, 291, 710, 769, 870, 1011
MluNI	TGGCCA	1 cut(s)	798
MnlI	CCTC	6 cut(s)	166, 184, 258, 427, 431, 733
Mox20I	TGGCCA	1 cut(s)	798
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	2 cut(s)	693, 965
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	2 cut(s)	143, 429
MspI	CCGG	2 cut(s)	114, 132
MspR9I	CCNGG	4 cut(s)	132, 133, 321, 1073
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	321, 1073
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	136, 438, 550
NciI	CCSGG	2 cut(s)	132, 133
NlaIII	CATG	3 cut(s)	75, 84, 929
NlaIV	GGNNCC	1 cut(s)	1069
NmuCI	GTSAC	1 cut(s)	860
NspI	RCATGY	2 cut(s)	75, 929
PciI	ACATGT	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	138, 223, 428, 431
PpuMI	RGGWCCY	1 cut(s)	1067
PscI	ACATGT	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	1067
Psp6I	CCWGG	2 cut(s)	319, 1071
PspGI	CCWGG	2 cut(s)	319, 1071
PspN4I	GGNNCC	1 cut(s)	1069
PspPI	GGNCC	1 cut(s)	1067
PspPPI	RGGWCCY	1 cut(s)	1067
PstI	CTGCAG	2 cut(s)	226, 853
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	4 cut(s)	211, 345, 506, 584
RsaNI	GTAC	4 cut(s)	210, 344, 505, 583
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	693, 965
SatI	GCNGC	4 cut(s)	137, 222, 427, 430
Sau96I	GGNCC	1 cut(s)	1067
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	4 cut(s)	132, 133, 321, 1073
SduI	GDGCHC	4 cut(s)	411, 525, 735, 815
SfcI	CTRYAG	2 cut(s)	222, 849
SinI	GGWCC	1 cut(s)	1067
SmaI	CCCGGG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	12
SrfI	GCCCGGGC	1 cut(s)	133
Sse9I	AATT	7 cut(s)	117, 273, 291, 710, 769, 870, 1011
SsiI	CCGC	4 cut(s)	143, 429, 448, 825
SspMI	CTAG	3 cut(s)	390, 657, 830
StyD4I	CCNGG	4 cut(s)	130, 131, 319, 1071
StyI	CCWWGG	2 cut(s)	589, 633
TaaI	ACNGT	2 cut(s)	817, 884
TaiI	ACGT	1 cut(s)	920
TaqI	TCGA	2 cut(s)	361, 809
TasI	AATT	7 cut(s)	117, 273, 291, 710, 769, 870, 1011
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	432
Tru1I	TTAA	2 cut(s)	693, 965
Tru9I	TTAA	2 cut(s)	693, 965
TscAI	CASTG	3 cut(s)	14, 418, 820
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	3 cut(s)	136, 221, 426
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	6 cut(s)	69, 253, 615, 695, 731, 766
TspGWI	ACGGA	1 cut(s)	179
TspMI	CCCGGG	1 cut(s)	131
TspRI	CASTG	3 cut(s)	14, 418, 820
VneI	GTGCAC	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	1067
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	2 cut(s)	117, 291
XceI	RCATGY	2 cut(s)	75, 929
XcmI	CCANNNNNNNNNTGG	2 cut(s)	587, 884
XmaI	CCCGGG	1 cut(s)	131
XspI	CTAG	3 cut(s)	390, 657, 830
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.