Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Reverse (-)

29935719 .. 29939100

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0277700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGACCACCCACCACAGAAAACCCATAAAACCCAGCTTCGCCTCGCTCTCCAAACCATGTTCCTGCCTATCCAAACCCTCCTCCAAATTCCTCTTCATCTCCATGGCCTCCTTCGTCTTCCTCTCCCTCCTAACCCTCACTCTCTTCCTCTCCCTGTCCTCCGCCGCCCGCCACCGCCACCCTTCCGCCACCGCCGCCGCCGCCACTCAGATCCAACTCGCCTGCAAAGCCACCCGCTTCCCCGACACGTGTCAGTCCTCCCTCGCCCAGCTCCCTGACCTTCCTCCGAACCCGACCCCAATCGAGACCATCGGACTAGCCATCCGGGTCTCCTCCGATGGGCTCAAGTCGGCCCAGAAAATGGTGACCGACATTCGAGAAGCGTCCAAGGGGAACCAGAACCGCACCCTCGCCGCCAATAACTGCCTCGAGGTTCTGCACAACTCCGAGTACCGCATTTCGCGGGCGACGGAGGAGCTCTCACGTGGGCGGACCAAGAGCGCACGCGCCGCCTTCAGCGCCGCCCTGCTCTACCAGTACGACTGCTGGTCGGGGCTCAAGTACGCCAACGACACCCAGATGGTCAACAAAACGATGTCGTTTCTCGACGGGCTGCAGAGCAGGTCCAGCAACGCCCTCAGCATGATGTTCTCCTACGACCACTACGGCGACGACACCAGCCTGTGGGCCCCGCCGAAGACCGAGCGTGACGGGTTCTGGGAGCGGGGGTCGGGTTCGGGTTCGGGTTTCTCGGGCGGCGTGCCGAAGAATCTGAAGGCGGACGCGACGGTGTGTGAGGAGGGGTGTGAGTGCCGGACGGTGCAGGAGGCGGTGGACAAGGCGCCGGAGAATTTGGAGGCGGGGAAGAGGTTCGTGATTCAGATAAAGACGGGGGTGTACGAGGAGACGGTGAGGGTGGCCTTAGAGAAGCGGAACCTGGTGTTCTTGGGCGACGGGATGGGCAAGACGGTAATTACCGGTTCGTTGAATGCGGGCCAGCCCGGAATCTCCACCTACAATACGGCCACCGTCGGAGTTCTTGGTGATGGGTTCATGGCCAGTGGTCTCACAATTGCAAACACAGCAGGCCCTGATGCCCACCAGGCAGTGGCTTTCCGATCAGACAGCGATCTATCCGTGATCGAGAACTGTGAGTTCTTAGGAAATCAGGACACTCTATATGCACATGGCAACCGTCAGCTATACAAATCGTGCAAAATCCAAGGCAATGTGGATTTCATCTTTGGAAACTCAGCTGCCATTTTCCAGGACTGCAACATCCTCGTTGCTCCCCGACAACTCAAACCCGAGAAGGGCGAAAACAATGCCATCACAGCCCATGGCAGGACAGACCCTGCACAGTCAACCGGTTTCGTTTTTCAAAATTGCTTGATCAACGGAACCGAAGAGTACATGAAATTGTATTACAGCAAACCCCAAGTGCACAAAAACTACTTGGGGAGGCCGTGGAAGGAGTATTCAAGGACGGTTTTCTTAAATTGCAATATGGAAGCTCTGGTTACCGCGCAGGGGTGGCTGCCTTGGAGTGGGGATTTTGCTTTGAAGACACTTTTCTATGGGGAGTACGGGAATACAGGAACAGGTTCGAATTTGACCCAGAGAGTGACCTGGAGCAGCAAGATTCCGACCGAGCATGTTAGTACATATTCAGTGCAGAATTTTATTCAGGGAGATGAGTGGATGGAGACCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

571

Amino Acids

62.53

Weight (kDa)

8.1

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	70 - 215	3.6e-22	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	262 - 565	7.3e-117	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	3 cut(s)	361, 684, 1108
AccBSI	CCGCTC	1 cut(s)	724
AccII	CGCG	4 cut(s)	463, 507, 785, 1526
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	2 cut(s)	1023, 1056
AcsI	RAATTY	4 cut(s)	86, 850, 1609, 1678
AcuI	CTGAAG	2 cut(s)	499, 794
AcvI	CACGTG	2 cut(s)	249, 485
AcyI	GRCGYC	1 cut(s)	842
AfaI	GTAC	7 cut(s)	452, 539, 563, 899, 1412, 1586, 1663
AfiI	CCNNNNNNNGG	8 cut(s)	339, 361, 684, 1108, 1313, 1344, 1530, 1547
AflIII	ACRYGT	2 cut(s)	246, 248
AgeI	ACCGGT	2 cut(s)	977, 1367
AgsI	TTSAA	4 cut(s)	988, 1382, 1482, 1564
AhdI	GACNNNNNGTC	1 cut(s)	547
AjnI	CCWGG	4 cut(s)	936, 1101, 1266, 1628
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	6 cut(s)	36, 271, 478, 1201, 1256, 1514
AluI	AGCT	6 cut(s)	36, 271, 478, 1201, 1256, 1514
Alw21I	GWGCWC	2 cut(s)	480, 1446
Alw26I	GTCTC	5 cut(s)	299, 334, 899, 1070, 1700
Alw44I	GTGCAC	1 cut(s)	1442
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	2 cut(s)	1091, 1355
Ama87I	CYCGRG	3 cut(s)	428, 751, 1307
AoxI	GGCC	9 cut(s)	105, 351, 687, 918, 994, 1023, 1056, 1087, 1463
ApaI	GGGCCC	1 cut(s)	691
ApaLI	GTGCAC	1 cut(s)	1442
ApeKI	GCWGC	4 cut(s)	613, 1256, 1537, 1635
ApoI	RAATTY	4 cut(s)	86, 850, 1609, 1678
AsiGI	ACCGGT	2 cut(s)	977, 1367
Asp700I	GAANNNNTTC	2 cut(s)	869, 1603
AspLEI	GCGC	5 cut(s)	503, 509, 521, 844, 1528
AspS9I	GGNCC	7 cut(s)	352, 492, 624, 687, 688, 994, 1088
AsuC2I	CCSGG	2 cut(s)	326, 1002
AsuHPI	GGTGA	3 cut(s)	376, 922, 1055
AsuII	TTCGAA	1 cut(s)	1607
AvaI	CYCGRG	3 cut(s)	428, 751, 1307
AvaII	GGWCC	2 cut(s)	492, 624
BaeGI	GKGCMC	2 cut(s)	691, 1446
BalI	TGGCCA	1 cut(s)	1058
BanI	GGYRCC	1 cut(s)	841
BanII	GRGCYC	4 cut(s)	345, 480, 558, 691
BbrPI	CACGTG	2 cut(s)	249, 485
BbsI	GAAGAC	3 cut(s)	109, 704, 1571
Bbv12I	GWGCWC	2 cut(s)	480, 1446
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	4 cut(s)	600, 1243, 1524, 1647
BccI	CCATC	8 cut(s)	317, 329, 332, 574, 952, 1040, 1337, 1696
BceAI	ACGGC	3 cut(s)	682, 1038, 1450
BcgI	CGANNNNNNTGC	4 cut(s)	1264, 1298, 1307, 1341
BciT130I	CCWGG	4 cut(s)	938, 1103, 1268, 1630
BclI	TGATCA	1 cut(s)	1392
BcnI	CCSGG	2 cut(s)	326, 1002
BcoDI	GTCTC	5 cut(s)	299, 334, 899, 1070, 1700
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	614
BfoI	RGCGCY	2 cut(s)	522, 845
BfuAI	ACCTGC	1 cut(s)	612
BglI	GCCNNNNNGGC	1 cut(s)	1103
Bme1390I	CCNGG	6 cut(s)	326, 938, 1002, 1103, 1268, 1630
Bme18I	GGWCC	2 cut(s)	492, 624
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmeT110I	CYCGRG	3 cut(s)	428, 751, 1307
BmgT120I	GGNCC	7 cut(s)	352, 492, 624, 687, 688, 994, 1088
BmiI	GGNNCC	6 cut(s)	395, 689, 690, 843, 935, 1402
BmrFI	CCNGG	6 cut(s)	326, 938, 1002, 1103, 1268, 1630
BmsI	GCATC	1 cut(s)	1084
BoxI	GACNNNNGTC	1 cut(s)	249
BpiI	GAAGAC	3 cut(s)	109, 704, 1571
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	1 cut(s)	1651
Bpu10I	CCTNAGC	1 cut(s)	638
Bpu14I	TTCGAA	1 cut(s)	1607
BpuEI	CTTGAG	2 cut(s)	329, 542
BpuMI	CCSGG	2 cut(s)	326, 1002
BsaAI	YACGTR	2 cut(s)	249, 485
BsaHI	GRCGYC	1 cut(s)	842
BsaI	GGTCTC	4 cut(s)	299, 334, 1070, 1700
BsaJI	CCNNGG	6 cut(s)	102, 387, 1222, 1339, 1466, 1541
BsaWI	WCCGGW	2 cut(s)	977, 1367
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	8 cut(s)	339, 361, 684, 1108, 1313, 1344, 1530, 1547
Bse118I	RCCGGY	2 cut(s)	977, 1367
Bse1I	ACTGG	2 cut(s)	535, 1059
Bse3DI	GCAATG	1 cut(s)	1234
BseBI	CCWGG	4 cut(s)	938, 1103, 1268, 1630
BseDI	CCNNGG	6 cut(s)	102, 387, 1222, 1339, 1466, 1541
BseGI	GGATG	4 cut(s)	321, 963, 1278, 1707
BseLI	CCNNNNNNNGG	8 cut(s)	339, 361, 684, 1108, 1313, 1344, 1530, 1547
BseMI	GCAATG	1 cut(s)	1234
BseMII	CTCAG	3 cut(s)	221, 652, 1266
BseNI	ACTGG	2 cut(s)	535, 1059
BseRI	GAGGAG	5 cut(s)	70, 322, 488, 812, 917
BseSI	GKGCMC	2 cut(s)	691, 1446
BseXI	GCAGC	4 cut(s)	600, 1243, 1524, 1647
BseYI	CCCAGC	2 cut(s)	32, 267
BsgI	GTGCAG	4 cut(s)	422, 842, 1341, 1694
Bsh1236I	CGCG	4 cut(s)	463, 507, 785, 1526
Bsh1285I	CGRYCG	1 cut(s)	1650
BshFI	GGCC	9 cut(s)	107, 353, 689, 920, 996, 1025, 1058, 1089, 1465
BshNI	GGYRCC	1 cut(s)	841
BshTI	ACCGGT	2 cut(s)	977, 1367
BsiEI	CGRYCG	1 cut(s)	1650
BsiHKAI	GWGCWC	2 cut(s)	480, 1446
BsiHKCI	CYCGRG	3 cut(s)	428, 751, 1307
BsiSI	CCGG	6 cut(s)	325, 814, 845, 978, 1002, 1368
BslI	CCNNNNNNNGG	8 cut(s)	339, 361, 684, 1108, 1313, 1344, 1530, 1547
BsmAI	GTCTC	5 cut(s)	299, 334, 899, 1070, 1700
BsmBI	CGTCTC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	9 cut(s)	107, 353, 689, 920, 996, 1025, 1058, 1089, 1465
Bso31I	GGTCTC	4 cut(s)	299, 334, 1070, 1700
BsoBI	CYCGRG	3 cut(s)	428, 751, 1307
Bsp119I	TTCGAA	1 cut(s)	1607
Bsp120I	GGGCCC	1 cut(s)	687
Bsp1286I	GDGCHC	5 cut(s)	345, 480, 558, 691, 1446
Bsp143I	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
Bsp19I	CCATGG	2 cut(s)	102, 1339
BspANI	GGCC	9 cut(s)	107, 353, 689, 920, 996, 1025, 1058, 1089, 1465
BspCNI	CTCAG	3 cut(s)	220, 651, 1265
BspFNI	CGCG	4 cut(s)	463, 507, 785, 1526
BspLI	GGNNCC	6 cut(s)	395, 689, 690, 843, 935, 1402
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	612
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	1607
BspT107I	GGYRCC	1 cut(s)	841
BspTNI	GGTCTC	4 cut(s)	299, 334, 1070, 1700
BsrBI	CCGCTC	1 cut(s)	724
BsrDI	GCAATG	1 cut(s)	1234
BsrFI	RCCGGY	2 cut(s)	977, 1367
BsrI	ACTGG	2 cut(s)	535, 1059
BssAI	RCCGGY	2 cut(s)	977, 1367
BssECI	CCNNGG	6 cut(s)	102, 387, 1222, 1339, 1466, 1541
BssMI	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
BssNI	GRCGYC	1 cut(s)	842
BssT1I	CCWWGG	5 cut(s)	102, 387, 1222, 1339, 1541
Bst2UI	CCWGG	4 cut(s)	938, 1103, 1268, 1630
Bst4CI	ACNGT	9 cut(s)	790, 820, 910, 970, 1030, 1151, 1196, 1362, 1489
Bst6I	CTCTTC	4 cut(s)	98, 149, 860, 1401
BstACI	GRCGYC	1 cut(s)	842
BstBAI	YACGTR	2 cut(s)	249, 485
BstBI	TTCGAA	1 cut(s)	1607
BstC8I	GCNNGC	8 cut(s)	169, 223, 465, 505, 761, 994, 998, 1087
BstDEI	CTNAG	5 cut(s)	207, 638, 922, 1159, 1252
BstDSI	CCRYGG	3 cut(s)	102, 1339, 1466
BstEII	GGTNACC	2 cut(s)	364, 1519
BstF5I	GGATG	4 cut(s)	321, 963, 1278, 1707
BstFNI	CGCG	4 cut(s)	463, 507, 785, 1526
BstH2I	RGCGCY	2 cut(s)	522, 845
BstHHI	GCGC	5 cut(s)	503, 509, 521, 844, 1528
BstKTI	GATC	5 cut(s)	213, 1121, 1132, 1143, 1395
BstMAI	GTCTC	5 cut(s)	299, 334, 899, 1070, 1700
BstMBI	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
BstMCI	CGRYCG	1 cut(s)	1650
BstNI	CCWGG	4 cut(s)	938, 1103, 1268, 1630
BstNSI	RCATGY	1 cut(s)	1658
BstPAI	GACNNNNGTC	1 cut(s)	249
BstPI	GGTNACC	2 cut(s)	364, 1519
BstSCI	CCNGG	6 cut(s)	324, 936, 1000, 1101, 1266, 1628
BstSFI	CTRYAG	1 cut(s)	614
BstSLI	GKGCMC	2 cut(s)	691, 1446
BstUI	CGCG	4 cut(s)	463, 507, 785, 1526
BstV1I	GCAGC	4 cut(s)	600, 1243, 1524, 1647
BstV2I	GAAGAC	3 cut(s)	109, 704, 1571
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	9 cut(s)	107, 353, 689, 920, 996, 1025, 1058, 1089, 1465
BtgI	CCRYGG	3 cut(s)	102, 1339, 1466
BtsCI	GGATG	4 cut(s)	321, 963, 1278, 1707
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	3 cut(s)	1066, 1113, 1677
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	8 cut(s)	169, 223, 465, 505, 761, 994, 998, 1087
CaiI	CAGNNNCTG	2 cut(s)	1091, 1355
CfoI	GCGC	5 cut(s)	503, 509, 521, 844, 1528
Cfr10I	RCCGGY	2 cut(s)	977, 1367
Cfr13I	GGNCC	7 cut(s)	352, 492, 624, 687, 688, 994, 1088
CseI	GACGC	2 cut(s)	372, 791
CsiI	ACCWGGT	1 cut(s)	936
Csp6I	GTAC	7 cut(s)	451, 538, 562, 898, 1411, 1585, 1662
CspAI	ACCGGT	2 cut(s)	977, 1367
CviAII	CATG	8 cut(s)	57, 103, 643, 1054, 1187, 1340, 1414, 1655
CviQI	GTAC	7 cut(s)	451, 538, 562, 898, 1411, 1585, 1662
DdeI	CTNAG	5 cut(s)	207, 638, 922, 1159, 1252
DinI	GGCGCC	1 cut(s)	843
DpnI	GATC	5 cut(s)	212, 1120, 1131, 1142, 1394
DpnII	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
DriI	GACNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	2 cut(s)	1023, 1056
Eam1104I	CTCTTC	4 cut(s)	98, 149, 860, 1401
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	4 cut(s)	98, 149, 860, 1401
EciI	GGCGGA	4 cut(s)	151, 175, 505, 794
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	5 cut(s)	102, 387, 1222, 1339, 1541
Eco24I	GRGCYC	4 cut(s)	345, 480, 558, 691
Eco31I	GGTCTC	4 cut(s)	299, 334, 1070, 1700
Eco47I	GGWCC	2 cut(s)	492, 624
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	499, 794
Eco72I	CACGTG	2 cut(s)	249, 485
Eco88I	CYCGRG	3 cut(s)	428, 751, 1307
Eco91I	GGTNACC	2 cut(s)	364, 1519
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	2 cut(s)	688, 1088
EcoO65I	GGTNACC	2 cut(s)	364, 1519
EcoRII	CCWGG	4 cut(s)	936, 1101, 1266, 1628
EcoT14I	CCWWGG	5 cut(s)	102, 387, 1222, 1339, 1541
EcoT38I	GRGCYC	4 cut(s)	345, 480, 558, 691
EgeI	GGCGCC	1 cut(s)	843
EheI	GGCGCC	1 cut(s)	843
ErhI	CCWWGG	5 cut(s)	102, 387, 1222, 1339, 1541
Esp3I	CGTCTC	1 cut(s)	899
FaeI	CATG	8 cut(s)	60, 106, 646, 1057, 1190, 1343, 1417, 1658
FatI	CATG	8 cut(s)	56, 102, 642, 1053, 1186, 1339, 1413, 1654
FauI	CCCGC	7 cut(s)	176, 242, 456, 699, 717, 853, 985
FbaI	TGATCA	1 cut(s)	1392
FokI	GGATG	3 cut(s)	308, 970, 1265
FriOI	GRGCYC	4 cut(s)	345, 480, 558, 691
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	5 cut(s)	502, 508, 520, 843, 1527
GsaI	CCCAGC	2 cut(s)	36, 271
GsuI	CTGGAG	1 cut(s)	1651
HaeII	RGCGCY	2 cut(s)	522, 845
HaeIII	GGCC	9 cut(s)	107, 353, 689, 920, 996, 1025, 1058, 1089, 1465
HapII	CCGG	6 cut(s)	325, 814, 845, 978, 1002, 1368
HgaI	GACGC	2 cut(s)	372, 791
HhaI	GCGC	5 cut(s)	503, 509, 521, 844, 1528
Hin1I	GRCGYC	1 cut(s)	842
Hin1II	CATG	8 cut(s)	60, 106, 646, 1057, 1190, 1343, 1417, 1658
Hin6I	GCGC	5 cut(s)	501, 507, 519, 842, 1526
HinP1I	GCGC	5 cut(s)	501, 507, 519, 842, 1526
HincII	GTYRAC	2 cut(s)	586, 1365
HindII	GTYRAC	2 cut(s)	586, 1365
HinfI	GANTC	4 cut(s)	769, 877, 1005, 1642
HpaII	CCGG	6 cut(s)	325, 814, 845, 978, 1002, 1368
HphI	GGTGA	3 cut(s)	376, 922, 1055
Hpy166II	GTNNAC	5 cut(s)	586, 835, 898, 1365, 1444
Hpy188III	TCNNGA	6 cut(s)	304, 377, 605, 874, 1144, 1169
Hpy8I	GTNNAC	5 cut(s)	586, 835, 898, 1365, 1444
Hpy99I	CGWCG	6 cut(s)	472, 611, 674, 790, 956, 1034
HpyAV	CCTTC	7 cut(s)	121, 192, 290, 523, 769, 1306, 1465
HpyCH4III	ACNGT	9 cut(s)	790, 820, 910, 970, 1030, 1151, 1196, 1362, 1489
HpyCH4IV	ACGT	2 cut(s)	248, 484
HpyF3I	CTNAG	5 cut(s)	207, 638, 922, 1159, 1252
HpySE526I	ACGT	2 cut(s)	248, 484
Hsp92I	GRCGYC	1 cut(s)	842
Hsp92II	CATG	8 cut(s)	60, 106, 646, 1057, 1190, 1343, 1417, 1658
HspAI	GCGC	5 cut(s)	501, 507, 519, 842, 1526
KasI	GGCGCC	1 cut(s)	841
Ksp22I	TGATCA	1 cut(s)	1392
Kzo9I	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
LmnI	GCTCC	5 cut(s)	276, 475, 721, 1294, 1632
Lsp1109I	GCAGC	4 cut(s)	600, 1243, 1524, 1647
LweI	GCATC	1 cut(s)	1084
MabI	ACCWGGT	1 cut(s)	936
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	248, 484
MaeIII	GTNAC	4 cut(s)	364, 707, 1519, 1624
MalI	GATC	5 cut(s)	212, 1120, 1131, 1142, 1394
MbiI	CCGCTC	1 cut(s)	724
MboI	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
MboII	GAAGA	8 cut(s)	85, 109, 136, 709, 778, 877, 1418, 1576
MfeI	CAATTG	1 cut(s)	1071
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	5 cut(s)	345, 480, 558, 691, 1446
MlsI	TGGCCA	1 cut(s)	1058
MluCI	AATT	9 cut(s)	86, 850, 972, 1071, 1384, 1418, 1498, 1609, 1678
MluNI	TGGCCA	1 cut(s)	1058
Mly113I	GGCGCC	1 cut(s)	842
MmeI	TCCRAC	3 cut(s)	238, 1012, 1670
Mox20I	TGGCCA	1 cut(s)	1058
MroXI	GAANNNNTTC	2 cut(s)	869, 1603
MscI	TGGCCA	1 cut(s)	1058
MseI	TTAA	1 cut(s)	1496
MslI	CAYNNNNRTG	2 cut(s)	101, 578
Msp20I	TGGCCA	1 cut(s)	1058
MspA1I	CMGCKG	1 cut(s)	1256
MspI	CCGG	6 cut(s)	325, 814, 845, 978, 1002, 1368
MspR9I	CCNGG	6 cut(s)	326, 938, 1002, 1103, 1268, 1630
MunI	CAATTG	1 cut(s)	1071
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	4 cut(s)	938, 1103, 1268, 1630
MvnI	CGCG	4 cut(s)	463, 507, 785, 1526
NarI	GGCGCC	1 cut(s)	842
NciI	CCSGG	2 cut(s)	326, 1002
NcoI	CCATGG	2 cut(s)	102, 1339
NdeII	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
NlaIII	CATG	8 cut(s)	60, 106, 646, 1057, 1190, 1343, 1417, 1658
NlaIV	GGNNCC	6 cut(s)	395, 689, 690, 843, 935, 1402
NmuCI	GTSAC	3 cut(s)	364, 707, 1624
NspI	RCATGY	1 cut(s)	1658
NspV	TTCGAA	1 cut(s)	1607
PaeR7I	CTCGAG	1 cut(s)	428
PctI	GAATGC	1 cut(s)	994
PdmI	GAANNNNTTC	2 cut(s)	869, 1603
PfeI	GAWTC	4 cut(s)	769, 877, 1005, 1642
PflMI	CCANNNNNTGG	3 cut(s)	361, 684, 1108
PfoI	TCCNGGA	1 cut(s)	1266
PinAI	ACCGGT	2 cut(s)	977, 1367
PluTI	GGCGCC	1 cut(s)	845
PmaCI	CACGTG	2 cut(s)	249, 485
PmlI	CACGTG	2 cut(s)	249, 485
Ppu21I	YACGTR	2 cut(s)	249, 485
PshAI	GACNNNNGTC	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	4 cut(s)	936, 1101, 1266, 1628
PspCI	CACGTG	2 cut(s)	249, 485
PspEI	GGTNACC	2 cut(s)	364, 1519
PspFI	CCCAGC	2 cut(s)	32, 267
PspGI	CCWGG	4 cut(s)	936, 1101, 1266, 1628
PspN4I	GGNNCC	6 cut(s)	395, 689, 690, 843, 935, 1402
PspOMI	GGGCCC	1 cut(s)	687
PspPI	GGNCC	7 cut(s)	352, 492, 624, 687, 688, 994, 1088
PspXI	VCTCGAGB	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	2 cut(s)	1091, 1355
PsuI	RGATCY	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	1256
RsaI	GTAC	7 cut(s)	452, 539, 563, 899, 1412, 1586, 1663
RsaNI	GTAC	7 cut(s)	451, 538, 562, 898, 1411, 1585, 1662
RseI	CAYNNNNRTG	2 cut(s)	101, 578
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	1496
Sau3AI	GATC	5 cut(s)	210, 1118, 1129, 1140, 1392
Sau96I	GGNCC	7 cut(s)	352, 492, 624, 687, 688, 994, 1088
ScrFI	CCNGG	6 cut(s)	326, 938, 1002, 1103, 1268, 1630
SduI	GDGCHC	5 cut(s)	345, 480, 558, 691, 1446
SexAI	ACCWGGT	1 cut(s)	936
SfaNI	GCATC	1 cut(s)	1084
SfcI	CTRYAG	1 cut(s)	614
SfoI	GGCGCC	1 cut(s)	843
Sfr274I	CTCGAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	1607
SinI	GGWCC	2 cut(s)	492, 624
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	101, 578
SmlI	CTYRAG	3 cut(s)	344, 428, 557
SmoI	CTYRAG	3 cut(s)	344, 428, 557
Sse9I	AATT	9 cut(s)	86, 850, 972, 1071, 1384, 1418, 1498, 1609, 1678
SspDI	GGCGCC	1 cut(s)	841
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	6 cut(s)	324, 936, 1000, 1101, 1266, 1628
StyI	CCWWGG	5 cut(s)	102, 387, 1222, 1339, 1541
TaaI	ACNGT	9 cut(s)	790, 820, 910, 970, 1030, 1151, 1196, 1362, 1489
TaiI	ACGT	2 cut(s)	251, 487
TaqI	TCGA	6 cut(s)	303, 376, 429, 606, 1143, 1607
TaqII	GACCGA	3 cut(s)	383, 716, 1664
TasI	AATT	9 cut(s)	86, 850, 972, 1071, 1384, 1418, 1498, 1609, 1678
TatI	WGTACW	2 cut(s)	1410, 1661
TauI	GCSGC	8 cut(s)	167, 197, 200, 203, 416, 512, 524, 759
TfiI	GAWTC	4 cut(s)	769, 877, 1005, 1642
Tru1I	TTAA	1 cut(s)	1496
Tru9I	TTAA	1 cut(s)	1496
TscAI	CASTG	3 cut(s)	1066, 1113, 1677
TseFI	GTSAC	3 cut(s)	364, 707, 1624
TseI	GCWGC	4 cut(s)	613, 1256, 1537, 1635
Tsp45I	GTSAC	3 cut(s)	364, 707, 1624
TspDTI	ATGAA	4 cut(s)	85, 1042, 1228, 1430
TspGWI	ACGGA	3 cut(s)	485, 1126, 1413
TspRI	CASTG	3 cut(s)	1066, 1113, 1677
Van91I	CCANNNNNTGG	3 cut(s)	361, 684, 1108
VneI	GTGCAC	1 cut(s)	1442
VpaK11BI	GGWCC	2 cut(s)	492, 624
XapI	RAATTY	4 cut(s)	86, 850, 1609, 1678
XceI	RCATGY	1 cut(s)	1658
XhoI	CTCGAG	1 cut(s)	428
XmnI	GAANNNNTTC	2 cut(s)	869, 1603
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.