Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003429

Physical Location & Seq

Genomic Coordinates Reverse (-)

26019788 .. 26021853

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACATGGTGCAACGACTCCGACGATGAGAGGGCCATTCAGATTATCGGTGCCCCTCCTCCTAATAACCCTAATAATCCAAATGAATTTCGAAACATAACTTGCCCCTCTTGTGGACATCACATAGAATTCCAAGACCAGGCAGGAATCCATGATTTGCCTGGACTACCAGCAGGAGTGAAGTTTGATCCAACTGACCAAGAAATTCTTCAACATTTAGATGCAAAGGTTTTGTCTGATACCCGAAGGCTGCATCCTCTCATTGATGAGTTCATACCAACGCTTGAAGGGGAGAATGGGATTTGCTACACTCACCCAGAAAAGCTACCAGGAGTGAACAAAGACGGACAAATCCGCCACTTCTTCCACCGTCCATCGAAGGCATACACGACTGGGACCAGAAAGCGAAGGAAGGTTCACACCGAAGAAGATGGAAGCGAAACCAGATGGCACAAAACCGGCAAGACAAGGCCGGTTCTTGTCGGCGGAGCAGTGAAGGGTTTCAAAAAGATCTTAGTCCTCTATACCAACTATGGGAGGCAAAGAAAACCAGAAAAGACCAATTGGGTCATGCACCAATACCACCTTGGCAACAATGAGGAGGAGAAAGATGGTGAGCTGGTGGTCTCAAAGGTCTTTTACCAAACACAGCCTAGGCAATGTGGATCAAGCAAGGACGTTCCAGCGATTGATCATCATCAAGGTGTGAATATAAGAGGTGGGCAAGGGCATGATGGTCTAATTAGTGCTGCTACTAATCCTTTTCCTCTAGCAAAGAAGGCAGGTCTTGTGGAGTACTATGATCCCGGAGGTCCTTTCATTAATTATGATCATCATCAACATAATCATAATCAAGGGGGCGATAATAGAGAAAGCCCACCTCAGCTAATCCCAAATTTAGTTGTCCAAGGTGACGGGTCTTCGTTTATTCGATTAACTTCAGATGCAAGCAAAGGGAAGCTTGAGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

325

Amino Acids

36.32

Weight (kDa)

7.33

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28500
fragaria_vesca	FvH4_3g08490 FvH4_3g08490 FvH4_3g08490 FvH4_6g26730 FvH4_6g26730
malus_domestica	MD05G1309700.v1.1 MD10G1288300.v1.1
prunus_persica	Prupe.4G053300_v2.0.a1
pyrus_communis	pycom05g28610 pycom10g24150
rosa_chinensis	RchiOBHm_Chr0c19g0500091 RchiOBHm_Chr5g0009331
rosa_laevigata	RLG00000018986 RLG00000031652
rosa_multiflora	Rmu_sc0009480.1_g000005 Rmu_sc0024560.1_g000002 Rmu_sc0040267.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066760 Rroxscaffold_1G00067460 Rroxscaffold_2G00115740 Rroxscaffold_2G00116200
rosa_rugosa	Rorug02G0277600 Rorug02G0277600 Rorug02G0277700 Rorug04G0441800
rosa_samantha	Rh2AG328400 Rh2BG338700 Rh2CG315600 Rh2DG355400 Rh5AG072600 Rh5BG068900 Rh5CG081500 Rh5DG069200
rosa_wichuraiana	Rw2G026640 Rw5G006780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	50
AciI	CCGC	2 cut(s)	355, 486
AclWI	GGATC	3 cut(s)	182, 673, 797
AcsI	RAATTY	4 cut(s)	86, 128, 204, 895
AcuI	CTGAAG	1 cut(s)	924
AfaI	GTAC	1 cut(s)	797
AfiI	CCNNNNNNNGG	3 cut(s)	113, 139, 534
AgsI	TTSAA	3 cut(s)	212, 287, 505
AjnI	CCWGG	3 cut(s)	138, 160, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	4 cut(s)	325, 619, 886, 961
AluI	AGCT	4 cut(s)	325, 619, 886, 961
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	3 cut(s)	182, 673, 797
AoxI	GGCC	2 cut(s)	33, 470
ApeKI	GCWGC	2 cut(s)	250, 749
ApoI	RAATTY	4 cut(s)	86, 128, 204, 895
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AseI	ATTAAT	1 cut(s)	822
Asp700I	GAANNNNTTC	2 cut(s)	207, 500
AspA2I	CCTAGG	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	33, 396, 812
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	3 cut(s)	305, 626, 923
AsuII	TTCGAA	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	396, 812
AvrII	CCTAGG	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	912
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	2 cut(s)	237, 736
BccI	CCATC	5 cut(s)	382, 425, 441, 605, 728
BciT130I	CCWGG	3 cut(s)	140, 162, 330
BclI	TGATCA	2 cut(s)	691, 829
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	2 cut(s)	654, 770
BfuAI	ACCTGC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	2 cut(s)	251, 750
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	2 cut(s)	252, 751
BmcAI	AGTACT	1 cut(s)	797
Bme1390I	CCNGG	4 cut(s)	140, 162, 330, 807
Bme18I	GGWCC	2 cut(s)	396, 812
BmgT120I	GGNCC	3 cut(s)	33, 396, 812
BmiI	GGNNCC	2 cut(s)	52, 397
BmrFI	CCNGG	4 cut(s)	140, 162, 330, 807
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	211, 262, 934
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	912
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu14I	TTCGAA	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	807
BsaBI	GATNNNNATC	2 cut(s)	696, 834
BsaI	GGTCTC	1 cut(s)	631
BsaJI	CCNNGG	3 cut(s)	586, 653, 907
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 139, 534
Bse118I	RCCGGY	2 cut(s)	458, 472
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	665
Bse8I	GATNNNNATC	2 cut(s)	696, 834
BseBI	CCWGG	3 cut(s)	140, 162, 330
BseDI	CCNNGG	3 cut(s)	586, 653, 907
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	2 cut(s)	696, 834
BseLI	CCNNNNNNNGG	3 cut(s)	113, 139, 534
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	896
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	3 cut(s)	48, 614, 617
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	237, 736
BshFI	GGCC	2 cut(s)	35, 472
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	459, 473, 807
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	113, 139, 534
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	35, 472
Bso31I	GGTCTC	1 cut(s)	631
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
BspACI	CCGC	2 cut(s)	355, 486
BspANI	GGCC	2 cut(s)	35, 472
BspCNI	CTCAG	1 cut(s)	895
BspLI	GGNNCC	2 cut(s)	52, 397
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	3 cut(s)	182, 673, 797
BspT104I	TTCGAA	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	631
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	2 cut(s)	458, 472
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	2 cut(s)	458, 472
BssECI	CCNNGG	3 cut(s)	586, 653, 907
BssMI	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
BssT1I	CCWWGG	3 cut(s)	586, 653, 907
Bst2UI	CCWGG	3 cut(s)	140, 162, 330
Bst4CI	ACNGT	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	949
BstDEI	CTNAG	2 cut(s)	514, 882
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	6 cut(s)	190, 513, 668, 694, 805, 832
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	779
BstNI	CCWGG	3 cut(s)	140, 162, 330
BstSCI	CCNGG	4 cut(s)	138, 160, 328, 805
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	237, 736
BstV2I	GAAGAC	1 cut(s)	912
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	35, 472
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	949
Cfr10I	RCCGGY	2 cut(s)	458, 472
Cfr13I	GGNCC	3 cut(s)	33, 396, 812
Csp6I	GTAC	1 cut(s)	796
CviAII	CATG	4 cut(s)	6, 152, 571, 731
CviJI	RGCY	9 cut(s)	35, 250, 325, 472, 619, 652, 876, 886, 961
CviKI_1	RGCY	9 cut(s)	35, 250, 325, 472, 619, 652, 876, 886, 961
CviQI	GTAC	1 cut(s)	796
DdeI	CTNAG	2 cut(s)	514, 882
DpnI	GATC	6 cut(s)	189, 512, 667, 693, 804, 831
DpnII	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
EciI	GGCGGA	2 cut(s)	344, 501
Eco130I	CCWWGG	3 cut(s)	586, 653, 907
Eco31I	GGTCTC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	396, 812
Eco57I	CTGAAG	1 cut(s)	924
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	3 cut(s)	138, 160, 328
EcoT14I	CCWWGG	3 cut(s)	586, 653, 907
ErhI	CCWWGG	3 cut(s)	586, 653, 907
FaeI	CATG	4 cut(s)	9, 155, 574, 734
FalI	AAGNNNNNCTT	3 cut(s)	192, 224, 945
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	5, 151, 570, 730
FbaI	TGATCA	2 cut(s)	691, 829
Fnu4HI	GCNGC	2 cut(s)	251, 750
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	251, 750
FspBI	CTAG	2 cut(s)	654, 770
GluI	GCNGC	2 cut(s)	251, 750
HaeIII	GGCC	2 cut(s)	35, 472
HapII	CCGG	3 cut(s)	459, 473, 807
Hin1II	CATG	4 cut(s)	9, 155, 574, 734
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	2 cut(s)	17, 147
HpaII	CCGG	3 cut(s)	459, 473, 807
HphI	GGTGA	3 cut(s)	305, 626, 923
Hpy166II	GTNNAC	3 cut(s)	116, 337, 418
Hpy188I	TCNGA	4 cut(s)	22, 42, 238, 943
Hpy8I	GTNNAC	3 cut(s)	116, 337, 418
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	7 cut(s)	240, 281, 373, 402, 406, 490, 772
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	5 cut(s)	12, 224, 253, 574, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	779
HpyF3I	CTNAG	2 cut(s)	514, 882
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	4 cut(s)	9, 155, 574, 734
Ksp22I	TGATCA	2 cut(s)	691, 829
Kzo9I	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	2 cut(s)	237, 736
LweI	GCATC	3 cut(s)	211, 262, 934
MaeI	CTAG	2 cut(s)	654, 770
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	1 cut(s)	911
MalI	GATC	6 cut(s)	189, 512, 667, 693, 804, 831
MboI	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
MboII	GAAGA	5 cut(s)	200, 355, 437, 440, 912
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	7 cut(s)	86, 128, 204, 562, 741, 823, 895
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	2 cut(s)	45, 215
MroXI	GAANNNNTTC	2 cut(s)	207, 500
MseI	TTAA	2 cut(s)	822, 935
MslI	CAYNNNNRTG	2 cut(s)	219, 702
MspI	CCGG	3 cut(s)	459, 473, 807
MspR9I	CCNGG	4 cut(s)	140, 162, 330, 807
MunI	CAATTG	1 cut(s)	562
MvaI	CCWGG	3 cut(s)	140, 162, 330
MwoI	GCNNNNNNNGC	1 cut(s)	779
NciI	CCSGG	1 cut(s)	807
NdeII	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
NlaIII	CATG	4 cut(s)	9, 155, 574, 734
NlaIV	GGNNCC	2 cut(s)	52, 397
NmuCI	GTSAC	1 cut(s)	911
NspV	TTCGAA	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	2 cut(s)	207, 500
PfeI	GAWTC	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	2 cut(s)	252, 751
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	812
PshBI	ATTAAT	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	3 cut(s)	138, 160, 328
PspGI	CCWGG	3 cut(s)	138, 160, 328
PspN4I	GGNNCC	2 cut(s)	52, 397
PspPI	GGNCC	3 cut(s)	33, 396, 812
PspPPI	RGGWCCY	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	510
RsaI	GTAC	1 cut(s)	797
RsaNI	GTAC	1 cut(s)	796
RseI	CAYNNNNRTG	2 cut(s)	219, 702
SaqAI	TTAA	2 cut(s)	822, 935
SatI	GCNGC	2 cut(s)	251, 750
Sau3AI	GATC	6 cut(s)	187, 510, 665, 691, 802, 829
Sau96I	GGNCC	3 cut(s)	33, 396, 812
ScaI	AGTACT	1 cut(s)	797
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	4 cut(s)	140, 162, 330, 807
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	3 cut(s)	211, 262, 934
SfuI	TTCGAA	1 cut(s)	91
SinI	GGWCC	2 cut(s)	396, 812
SmiMI	CAYNNNNRTG	2 cut(s)	219, 702
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	7 cut(s)	86, 128, 204, 562, 741, 823, 895
SsiI	CCGC	2 cut(s)	355, 486
SspMI	CTAG	2 cut(s)	654, 770
StyD4I	CCNGG	4 cut(s)	138, 160, 328, 805
StyI	CCWWGG	3 cut(s)	586, 653, 907
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	3 cut(s)	91, 377, 931
TasI	AATT	7 cut(s)	86, 128, 204, 562, 741, 823, 895
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	2 cut(s)	822, 935
Tru9I	TTAA	2 cut(s)	822, 935
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	2 cut(s)	250, 749
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	3 cut(s)	99, 262, 808
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	396, 812
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	4 cut(s)	86, 128, 204, 895
XcmI	CCANNNNNNNNNTGG	2 cut(s)	158, 584
XmaJI	CCTAGG	1 cut(s)	653
XmnI	GAANNNNTTC	2 cut(s)	207, 500
XspI	CTAG	2 cut(s)	654, 770
ZrmI	AGTACT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.