Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007375

Physical Location & Seq

Genomic Coordinates Forward (+)

26015507 .. 26017112

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGAGAAGATGCTTTAAGGGCAGAATTCGCTGATACTCTGGCTGATAAGGAGGAGGAAATAAAGGATAAGACGGCAAAGATTGAACATGCAGAACAGTGCTTGACAACTCTAAGGTTAGAATTGAAGGCTGCCCAATCAAAAGTAGATAGTTATGATGCTGAAATATCATCCATGAAGCTTGAAATAAAGGAGTTCAGTAAAAAATTAGAAGCTGCAAATGCAAAGGCCCACTCATTTGAGAGAGAGAAGAAGATACTGGAGCAGGAGAAGATATATCTGGAGCAGAAGTACGAATCTGATATAAAAAGATTTGACGAAGTGCAAGAAAGGTGCAAAATTGCTGAAAAGGAAGCAACAAGAGCAACTGATATTGCTGATAGAGCACGGGCTCAAGCAGATACTGCTCAGAAGGAAAAGAGTGAGATGCAGAGATTGGCAATGGAAAGATTGGCCCAAATTGAGAGGGCTGAGAGGCTTATTGAAAGTTTGCAAAGGGAAAAAAGAGACTTGGATAATGAACTAGACAGAATTCGTGTATCAGAGATGGAAGCTCATTCGAAAGTTACCCTACTGGAGGGAAGAGTTGAAGAACGAGAGAAGGAGATAGAATTGCTTTTGAAATCAAATAACGAGCAGAGAACTAGTACTGTTCAGGTTCTTCAAGGCCTTCTGGAAAGTGAGCGCGCAGCACATGCAGATGCAAACAATAGAGCAGACCACCTCTCTCATCAGCTACAACTTGCACAATCACAACTTGATTCACTCCAGCAAGAATTGACTTCTGTTCGGCTGAATGAAACAGCATTGGATAGCAAGCTAAAGACTGCTTCCCGTGGGAAACGCTCAAGGGTAGACGACTATGAAATGGGCATGGACTCTGTTCAAGACGTGGAGATGAGTGATCGGATTTTAAGAGTGAATAAGAGGTCTAGAAGTAATACCAGTCCGCACACACAAAAAGAAGATGGTGGTTCAGTATTCAAGGGAGATGATGATACCCGCAGTCAGCAAACCAATTCGGAGGACTATAAAAAGTTCACCGTCGCAAAAATTAAGCAAGAACTCACAAAACATAATTTTGGTGCCGAAGTGCTGGAGTTGAGAAGCAATGCTAGCAAAAAAGAATGGCTTGATCTGTACGAGAAATGCATCCTCCAGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0012505 GO:0015629 GO:0017076 GO:0019001 GO:0019221 GO:0023052 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034097 GO:0034340 GO:0034341 GO:0034504 GO:0034612 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0060333 GO:0060337 GO:0065007 GO:0070013 GO:0070555 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071347 GO:0071356 GO:0071357 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

390

Amino Acids

44.96

Weight (kDa)

5.59

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46070
fragaria_vesca	FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471 FvH4_3g08471
malus_domestica	MD05G1309600.v1.1 MD10G1288200.v1.1
prunus_persica	Prupe.4G053400_v2.0.a1
pyrus_communis	pycom05g28600 pycom10g24130 pycom10g24140
rosa_chinensis	RchiOBHm_Chr5g0009341
rosa_laevigata	RLG00000031653
rosa_multiflora	Rmu_sc0002711.1_g000023 Rmu_sc0009480.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066750 Rroxscaffold_1G00067450
rosa_rugosa	Rorug04G0441800
rosa_samantha	Rh5AG072700 Rh5BG069000 Rh5CG081600 Rh5DG069300
rosa_wichuraiana	Rw5G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1085
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	1 cut(s)	687
AciI	CCGC	2 cut(s)	950, 1003
AcsI	RAATTY	2 cut(s)	26, 531
AfaI	GTAC	3 cut(s)	293, 649, 1142
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	9 cut(s)	86, 127, 185, 485, 590, 622, 665, 887, 985
AhlI	ACTAGT	1 cut(s)	644
AjiI	CACGTC	1 cut(s)	892
AluBI	AGCT	5 cut(s)	181, 215, 554, 736, 820
AluI	AGCT	5 cut(s)	181, 215, 554, 736, 820
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	3 cut(s)	228, 453, 667
ApeKI	GCWGC	3 cut(s)	131, 215, 689
ApoI	RAATTY	2 cut(s)	26, 531
AspLEI	GCGC	2 cut(s)	687, 689
AspS9I	GGNCC	2 cut(s)	229, 454
AsuHPI	GGTGA	1 cut(s)	1033
AsuII	TTCGAA	1 cut(s)	560
AsuNHI	GCTAGC	1 cut(s)	1115
BanI	GGYRCC	1 cut(s)	1085
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	118, 202, 701
BccI	CCATC	2 cut(s)	541, 962
BceAI	ACGGC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	501
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	4 cut(s)	524, 645, 933, 1116
BisI	GCNGC	3 cut(s)	132, 216, 690
BlsI	GCNGC	3 cut(s)	133, 217, 691
BmcAI	AGTACT	1 cut(s)	649
BmgBI	CACGTC	1 cut(s)	892
BmgT120I	GGNCC	2 cut(s)	229, 454
BmiI	GGNNCC	1 cut(s)	1087
BmsI	GCATC	4 cut(s)	148, 417, 691, 1161
BmtI	GCTAGC	1 cut(s)	1119
BpmI	CTGGAG	6 cut(s)	281, 302, 596, 752, 1118, 1142
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	378, 832
BsaJI	CCNNGG	1 cut(s)	835
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	3 cut(s)	264, 579, 945
Bse3DI	GCAATG	2 cut(s)	447, 1117
BseDI	CCNNGG	1 cut(s)	835
BseGI	GGATG	2 cut(s)	170, 1152
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMI	GCAATG	2 cut(s)	447, 1117
BseMII	CTCAG	2 cut(s)	422, 462
BseNI	ACTGG	3 cut(s)	264, 579, 945
BsePI	GCGCGC	1 cut(s)	685
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	118, 202, 701
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	3 cut(s)	230, 455, 669
BshNI	GGYRCC	1 cut(s)	1085
BsiHKAI	GWGCWC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	1 cut(s)	501
BsnI	GGCC	3 cut(s)	230, 455, 669
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	388, 394
Bsp143I	GATC	2 cut(s)	904, 1135
BspACI	CCGC	2 cut(s)	950, 1003
BspANI	GGCC	3 cut(s)	230, 455, 669
BspCNI	CTCAG	2 cut(s)	421, 463
BspFNI	CGCG	1 cut(s)	687
BspLI	GGNNCC	1 cut(s)	1087
BspOI	GCTAGC	1 cut(s)	1119
BspT104I	TTCGAA	1 cut(s)	560
BspT107I	GGYRCC	1 cut(s)	1085
BsrDI	GCAATG	2 cut(s)	447, 1117
BsrI	ACTGG	3 cut(s)	264, 579, 945
BssECI	CCNNGG	1 cut(s)	835
BssHII	GCGCGC	1 cut(s)	685
BssMI	GATC	2 cut(s)	904, 1135
Bst4CI	ACNGT	3 cut(s)	99, 652, 1045
Bst6I	CTCTTC	1 cut(s)	577
BstAPI	GCANNNNNTGC	2 cut(s)	404, 695
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	687, 818, 1117
BstDEI	CTNAG	3 cut(s)	113, 408, 471
BstDSI	CCRYGG	1 cut(s)	835
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	170, 1152
BstFNI	CGCG	1 cut(s)	687
BstHHI	GCGC	2 cut(s)	687, 689
BstKTI	GATC	2 cut(s)	907, 1138
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	2 cut(s)	904, 1135
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 29, 221, 362, 383, 404, 695, 1116
BstNSI	RCATGY	2 cut(s)	92, 698
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	3 cut(s)	118, 202, 701
BsuRI	GGCC	3 cut(s)	230, 455, 669
BtgI	CCRYGG	1 cut(s)	835
BtrI	CACGTC	1 cut(s)	892
BtsCI	GGATG	2 cut(s)	170, 1152
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	687, 818, 1117
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	2 cut(s)	687, 689
Cfr13I	GGNCC	2 cut(s)	229, 454
Csp6I	GTAC	3 cut(s)	292, 648, 1141
CviAII	CATG	4 cut(s)	89, 175, 695, 874
CviQI	GTAC	3 cut(s)	292, 648, 1141
DdeI	CTNAG	3 cut(s)	113, 408, 471
DpnI	GATC	2 cut(s)	906, 1137
DpnII	GATC	2 cut(s)	904, 1135
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoRI	GAATTC	2 cut(s)	26, 531
EcoT22I	ATGCAT	1 cut(s)	1154
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	4 cut(s)	92, 178, 698, 877
FalI	AAGNNNNNCTT	2 cut(s)	1116, 1148
FatI	CATG	4 cut(s)	88, 174, 694, 873
FauI	CCCGC	1 cut(s)	1010
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	3 cut(s)	132, 216, 690
FokI	GGATG	2 cut(s)	157, 1139
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	3 cut(s)	132, 216, 690
FspBI	CTAG	4 cut(s)	524, 645, 933, 1116
GlaI	GCGC	2 cut(s)	686, 688
GluI	GCNGC	3 cut(s)	132, 216, 690
GsuI	CTGGAG	6 cut(s)	281, 302, 596, 752, 1118, 1142
HaeIII	GGCC	3 cut(s)	230, 455, 669
HhaI	GCGC	2 cut(s)	687, 689
Hin1II	CATG	4 cut(s)	92, 178, 698, 877
Hin6I	GCGC	2 cut(s)	685, 687
HinP1I	GCGC	2 cut(s)	685, 687
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	296, 761, 878
HphI	GGTGA	1 cut(s)	1033
Hpy166II	GTNNAC	2 cut(s)	856, 1041
Hpy188I	TCNGA	5 cut(s)	301, 411, 544, 909, 1024
Hpy188III	TCNNGA	5 cut(s)	281, 674, 887, 933, 1159
Hpy8I	GTNNAC	2 cut(s)	856, 1041
Hpy99I	CGWCG	1 cut(s)	1049
HpyAV	CCTTC	4 cut(s)	121, 406, 595, 680
HpyCH4III	ACNGT	3 cut(s)	99, 652, 1045
HpyCH4IV	ACGT	1 cut(s)	891
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 29, 221, 362, 383, 404, 695, 1116
HpyF3I	CTNAG	3 cut(s)	113, 408, 471
HpySE526I	ACGT	1 cut(s)	891
Hsp92II	CATG	4 cut(s)	92, 178, 698, 877
HspAI	GCGC	2 cut(s)	685, 687
Kzo9I	GATC	2 cut(s)	904, 1135
LmnI	GCTCC	2 cut(s)	262, 283
Lsp1109I	GCAGC	3 cut(s)	118, 202, 701
LweI	GCATC	4 cut(s)	148, 417, 691, 1161
MaeI	CTAG	4 cut(s)	524, 645, 933, 1116
MaeII	ACGT	1 cut(s)	891
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	2 cut(s)	906, 1137
MboI	GATC	2 cut(s)	904, 1135
MboII	GAAGA	8 cut(s)	20, 262, 265, 283, 594, 602, 653, 977
MhlI	GDGCHC	2 cut(s)	388, 394
MlyI	GAGTC	1 cut(s)	872
MnlI	CCTC	9 cut(s)	46, 49, 459, 468, 571, 734, 921, 1018, 1166
Mph1103I	ATGCAT	1 cut(s)	1154
MseI	TTAA	3 cut(s)	17, 914, 1056
MslI	CAYNNNNRTG	1 cut(s)	699
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	8 cut(s)	20, 29, 221, 362, 383, 404, 695, 1116
NdeII	GATC	2 cut(s)	904, 1135
NheI	GCTAGC	1 cut(s)	1115
NlaIII	CATG	4 cut(s)	92, 178, 698, 877
NlaIV	GGNNCC	1 cut(s)	1087
NsiI	ATGCAT	1 cut(s)	1154
NspI	RCATGY	2 cut(s)	92, 698
NspV	TTCGAA	1 cut(s)	560
PauI	GCGCGC	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	669
PfeI	GAWTC	2 cut(s)	296, 761
PkrI	GCNGC	3 cut(s)	133, 217, 691
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
PspN4I	GGNNCC	1 cut(s)	1087
PspPI	GGNCC	2 cut(s)	229, 454
PstNI	CAGNNNCTG	1 cut(s)	404
PteI	GCGCGC	1 cut(s)	685
RsaI	GTAC	3 cut(s)	293, 649, 1142
RsaNI	GTAC	3 cut(s)	292, 648, 1141
RseI	CAYNNNNRTG	1 cut(s)	699
SaqAI	TTAA	3 cut(s)	17, 914, 1056
SatI	GCNGC	3 cut(s)	132, 216, 690
Sau3AI	GATC	2 cut(s)	904, 1135
Sau96I	GGNCC	2 cut(s)	229, 454
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	1 cut(s)	872
SduI	GDGCHC	2 cut(s)	388, 394
SfaNI	GCATC	4 cut(s)	148, 417, 691, 1161
SfuI	TTCGAA	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	2 cut(s)	393, 847
SmoI	CTYRAG	2 cut(s)	393, 847
SpeI	ACTAGT	1 cut(s)	644
SseBI	AGGCCT	1 cut(s)	669
SsiI	CCGC	2 cut(s)	950, 1003
SspMI	CTAG	4 cut(s)	524, 645, 933, 1116
StuI	AGGCCT	1 cut(s)	669
TaaI	ACNGT	3 cut(s)	99, 652, 1045
TaiI	ACGT	1 cut(s)	894
TaqI	TCGA	1 cut(s)	560
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	296, 761
Tru1I	TTAA	3 cut(s)	17, 914, 1056
Tru9I	TTAA	3 cut(s)	17, 914, 1056
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	3 cut(s)	131, 215, 689
TspDTI	ATGAA	4 cut(s)	191, 534, 813, 879
TspRI	CASTG	1 cut(s)	104
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	2 cut(s)	26, 531
XbaI	TCTAGA	1 cut(s)	932
XceI	RCATGY	2 cut(s)	92, 698
XmiI	GTMKAC	1 cut(s)	855
XspI	CTAG	4 cut(s)	524, 645, 933, 1116
ZrmI	AGTACT	1 cut(s)	649
Zsp2I	ATGCAT	1 cut(s)	1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.