pycom10g26960

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
28091547 .. 28093565
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
ATGGCGGTCTTCCGGTCCCTGAAAGCCCTAATCCAAAACCCTAAGAAATCATCCAGAGCCTTCCTCACCGCCACCGCTTCCTCCTCCTCCATCTCCGCCCCTCTTCACTACTCTCCTCTCTCCTACCCTCTCTCTTACCCCCTCTTCCGATTGCCGTCTCAGATTTCCAGGACCTTCCTCTCTCCGCTCTCCAATTGGATCGTTCCTTTTCACGGACCGCTCTTCCTCTCCTGCCCTCCATGGAAGCTCTCGCAGTCCTCCACTCCGCTCTACCTCGGCGGAAACGGCGTCGTCCTCAGAAAGATCGAAGCTTCATTGCACTTGAACCTGCTAAGGAGGAGACCGAGCTTCTCGCTCCCATTGGAGGTTGGGTCACTCTCGCCGGCTCCGACGGTGGTGGATCGCGGTGTCGGGTTGAAAGATGTCAGTGACGATTTCGTCAATTTGCCCAATATGATCTCCATGAGTCGGTTGATTTCGGGTCCTTTGCTTGGATGGATGATCACAAATGAATGGTACTCTTCTGCAATGGTGGGATTGGCAGTCTCTGGGGCAAGTGACTGGTTGGATGGATACATGGCTAGGAGGATGAAGATCAATTCTGTTGTTGGGTCCTATCTGGATCCCCTTGCTGATAAGGTTCTTATAGGATGCGTTGCTTTGGCCTTGGTGCATAAGGGTCTTCTTCACCCTGGACTGGTTGGACTCATTGTGTTCCGGGATGTTGGCCTTGTTGGTGGTGCAGTTTATCAAAGAGCTAGTAGCTTGGGGTGGAAGTGGAATAGTTGGTCCGACTTTTTCAACCTTGATGGAACCCGTCCCGAGAAGGTCGAACCGCTCTTTATTAGTAAGCTTAACACGGTCTTCCAGTTGATTTTAGTAGCGGCAGTTCTCCTTCAACCAGAGTTTGGAACGCAAGAAACTCAGTCGTACATTAAATACTTGAGTTGGTTAGTTGCATCAACAACAGTGGCTTCCACAGCAGCGTACGGGGCACAACACTTGGGGAGATCTGCATTGACCGCTCGGAAATCCTAA

Protein Analysis

346

Amino Acids

37.61

Weight (kDa)

9.83

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 148 - 319 4.3e-26 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012905)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 336
AccB7I CCANNNNNTGG 1 cut(s) 908
AccBSI CCGCTC 5 cut(s) 187, 220, 268, 838, 1025
AccII CGCG 1 cut(s) 405
AclWI GGATC 4 cut(s) 206, 408, 617, 630
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 3 cut(s) 518, 932, 989
AfiI CCNNNNNNNGG 6 cut(s) 212, 364, 468, 491, 697, 908
AgsI TTSAA 4 cut(s) 325, 418, 802, 899
AjnI CCWGG 2 cut(s) 167, 691
AluBI AGCT 6 cut(s) 247, 311, 348, 758, 765, 853
AluI AGCT 6 cut(s) 247, 311, 348, 758, 765, 853
Alw26I GTCTC 3 cut(s) 162, 334, 550
AlwI GGATC 4 cut(s) 206, 408, 617, 630
AlwNI CAGNNNCTG 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 2 cut(s) 663, 727
ApeKI GCWGC 1 cut(s) 983
AspS9I GGNCC 6 cut(s) 15, 171, 215, 482, 612, 789
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 2 cut(s) 58, 680
AvaI CYCGRG 1 cut(s) 821
AvaII GGWCC 6 cut(s) 15, 171, 215, 482, 612, 789
BaeGI GKGCMC 1 cut(s) 997
BamHI GGATCC 1 cut(s) 622
BbsI GAAGAC 2 cut(s) 674, 856
BbvI GCAGC 1 cut(s) 995
BccI CCATC 4 cut(s) 98, 489, 563, 803
BceAI ACGGC 2 cut(s) 139, 301
BciT130I CCWGG 2 cut(s) 169, 693
BciVI GTATCC 1 cut(s) 566
BclI TGATCA 1 cut(s) 501
BcnI CCSGG 1 cut(s) 719
BcoDI GTCTC 3 cut(s) 162, 334, 550
BfaI CTAG 2 cut(s) 582, 759
BfuAI ACCTGC 1 cut(s) 336
BfuI GTATCC 1 cut(s) 566
BglII AGATCT 1 cut(s) 1010
BisI GCNGC 2 cut(s) 885, 984
BlsI GCNGC 2 cut(s) 886, 985
Bme1390I CCNGG 3 cut(s) 169, 693, 719
Bme18I GGWCC 6 cut(s) 15, 171, 215, 482, 612, 789
BmeT110I CYCGRG 1 cut(s) 821
BmgT120I GGNCC 6 cut(s) 15, 171, 215, 482, 612, 789
BmiI GGNNCC 6 cut(s) 17, 387, 483, 613, 624, 814
BmrFI CCNGG 3 cut(s) 169, 693, 719
BmsI GCATC 2 cut(s) 641, 968
BpiI GAAGAC 2 cut(s) 674, 856
BplI GAGNNNNNCTC 2 cut(s) 48, 80
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 964
BpuMI CCSGG 1 cut(s) 719
BsaBI GATNNNNATC 1 cut(s) 593
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 4 cut(s) 239, 274, 666, 691
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 364, 468, 491, 697, 908
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 3 cut(s) 566, 702, 868
Bse3DI GCAATG 2 cut(s) 314, 534
Bse8I GATNNNNATC 1 cut(s) 593
BseBI CCWGG 2 cut(s) 169, 693
BseDI CCNNGG 4 cut(s) 239, 274, 666, 691
BseGI GGATG 7 cut(s) 50, 500, 504, 574, 594, 656, 727
BseJI GATNNNNATC 1 cut(s) 593
BseLI CCNNNNNNNGG 6 cut(s) 212, 364, 468, 491, 697, 908
BseMI GCAATG 2 cut(s) 314, 534
BseMII CTCAG 3 cut(s) 173, 310, 938
BseNI ACTGG 3 cut(s) 566, 702, 868
BseRI GAGGAG 4 cut(s) 73, 76, 105, 352
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 1 cut(s) 995
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 2 cut(s) 665, 729
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 3 cut(s) 13, 383, 718
BsiWI CGTACG 1 cut(s) 987
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 6 cut(s) 212, 364, 468, 491, 697, 908
BsmAI GTCTC 3 cut(s) 162, 334, 550
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 804
BsnI GGCC 2 cut(s) 665, 729
Bso31I GGTCTC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 997
Bsp143I GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
Bsp19I CCATGG 1 cut(s) 239
BspANI GGCC 2 cut(s) 665, 729
BspCNI CTCAG 3 cut(s) 172, 309, 937
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 6 cut(s) 17, 387, 483, 613, 624, 814
BspMI ACCTGC 1 cut(s) 336
BspPI GGATC 4 cut(s) 206, 408, 617, 630
BspQI GCTCTTC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 334
BsrBI CCGCTC 5 cut(s) 187, 220, 268, 838, 1025
BsrDI GCAATG 2 cut(s) 314, 534
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 3 cut(s) 566, 702, 868
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 4 cut(s) 239, 274, 666, 691
BssMI GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 239, 666
Bst2UI CCWGG 2 cut(s) 169, 693
Bst4CI ACNGT 3 cut(s) 394, 862, 970
Bst6I CTCTTC 4 cut(s) 108, 149, 227, 526
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 42, 159, 296, 332, 924
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 7 cut(s) 50, 500, 504, 574, 594, 656, 727
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 8 cut(s) 201, 306, 403, 459, 504, 597, 625, 1013
BstMAI GTCTC 3 cut(s) 162, 334, 550
BstMBI GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
BstMWI GCNNNNNNNGC 4 cut(s) 285, 980, 992, 1022
BstNI CCWGG 2 cut(s) 169, 693
BstSCI CCNGG 3 cut(s) 167, 691, 717
BstSLI GKGCMC 1 cut(s) 997
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 995
BstV2I GAAGAC 2 cut(s) 674, 856
BstX2I RGATCY 2 cut(s) 622, 1010
BstYI RGATCY 2 cut(s) 622, 1010
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 2 cut(s) 665, 729
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 7 cut(s) 50, 500, 504, 574, 594, 656, 727
BtsIMutI CAGTG 2 cut(s) 433, 975
BveI ACCTGC 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 6 cut(s) 15, 171, 215, 482, 612, 789
CpoI CGGWCCG 1 cut(s) 215
CseI GACGC 1 cut(s) 277
Csp6I GTAC 3 cut(s) 517, 931, 988
CspCI CAANNNNNGTGG 2 cut(s) 951, 986
CspI CGGWCCG 1 cut(s) 215
CviAII CATG 3 cut(s) 240, 463, 577
CviQI GTAC 3 cut(s) 517, 931, 988
DdeI CTNAG 5 cut(s) 42, 159, 296, 332, 924
DpnI GATC 8 cut(s) 200, 305, 402, 458, 503, 596, 624, 1012
DpnII GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1104I CTCTTC 4 cut(s) 108, 149, 227, 526
EarI CTCTTC 4 cut(s) 108, 149, 227, 526
EciI GGCGGA 2 cut(s) 85, 294
Eco130I CCWWGG 2 cut(s) 239, 666
Eco31I GGTCTC 1 cut(s) 334
Eco47I GGWCC 6 cut(s) 15, 171, 215, 482, 612, 789
Eco88I CYCGRG 1 cut(s) 821
EcoO109I RGGNCCY 3 cut(s) 171, 482, 612
EcoRII CCWGG 2 cut(s) 167, 691
EcoT14I CCWWGG 2 cut(s) 239, 666
ErhI CCWWGG 2 cut(s) 239, 666
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 3 cut(s) 243, 466, 580
FaiI YATR 6 cut(s) 241, 455, 464, 578, 647, 675
FaqI GGGAC 1 cut(s) 804
FatI CATG 3 cut(s) 239, 462, 576
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 2 cut(s) 885, 984
FokI GGATG 7 cut(s) 37, 507, 511, 581, 601, 663, 734
Fsp4HI GCNGC 2 cut(s) 885, 984
FspBI CTAG 2 cut(s) 582, 759
GluI GCNGC 2 cut(s) 885, 984
HaeIII GGCC 2 cut(s) 665, 729
HapII CCGG 3 cut(s) 13, 383, 718
HgaI GACGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 3 cut(s) 243, 466, 580
HindIII AAGCTT 2 cut(s) 309, 851
HinfI GANTC 2 cut(s) 466, 705
HpaII CCGG 3 cut(s) 13, 383, 718
HphI GGTGA 2 cut(s) 58, 680
Hpy188I TCNGA 6 cut(s) 149, 162, 299, 390, 793, 1029
Hpy188III TCNNGA 3 cut(s) 54, 620, 821
Hpy99I CGWCG 2 cut(s) 293, 394
HpyAV CCTTC 4 cut(s) 70, 184, 820, 905
HpyCH4III ACNGT 3 cut(s) 394, 862, 970
HpyCH4V TGCA 6 cut(s) 319, 527, 673, 743, 959, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 980, 992, 1022
HpyF3I CTNAG 5 cut(s) 42, 159, 296, 332, 924
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 3 cut(s) 243, 466, 580
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 2 cut(s) 360, 391
Lsp1109I GCAGC 1 cut(s) 995
LweI GCATC 2 cut(s) 641, 968
MaeI CTAG 2 cut(s) 582, 759
MaeIII GTNAC 3 cut(s) 372, 428, 557
MalI GATC 8 cut(s) 200, 305, 402, 458, 503, 596, 624, 1012
MbiI CCGCTC 5 cut(s) 187, 220, 268, 838, 1025
MboI GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
MboII GAAGA 8 cut(s) 95, 136, 214, 513, 604, 674, 677, 856
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 2 cut(s) 622, 1010
MhlI GDGCHC 1 cut(s) 997
MluCI AATT 3 cut(s) 193, 442, 598
MlyI GAGTC 2 cut(s) 475, 699
MmeI TCCRAC 4 cut(s) 413, 546, 682, 816
MroNI GCCGGC 1 cut(s) 382
MseI TTAA 2 cut(s) 855, 936
MspI CCGG 3 cut(s) 13, 383, 718
MspR9I CCNGG 3 cut(s) 169, 693, 719
MunI CAATTG 1 cut(s) 193
MvaI CCWGG 2 cut(s) 169, 693
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 285, 980, 992, 1022
NaeI GCCGGC 1 cut(s) 384
NciI CCSGG 1 cut(s) 719
NcoI CCATGG 1 cut(s) 239
NdeII GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 3 cut(s) 243, 466, 580
NlaIV GGNNCC 6 cut(s) 17, 387, 483, 613, 624, 814
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 3 cut(s) 372, 428, 557
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 384
Pfl23II CGTACG 1 cut(s) 987
PflMI CCANNNNNTGG 1 cut(s) 908
PfoI TCCNGGA 2 cut(s) 167, 717
PkrI GCNGC 2 cut(s) 886, 985
PleI GAGTC 2 cut(s) 474, 699
PpsI GAGTC 2 cut(s) 474, 699
PpuMI RGGWCCY 3 cut(s) 171, 482, 612
Psp5II RGGWCCY 3 cut(s) 171, 482, 612
Psp6I CCWGG 2 cut(s) 167, 691
PspGI CCWGG 2 cut(s) 167, 691
PspLI CGTACG 1 cut(s) 987
PspN4I GGNNCC 6 cut(s) 17, 387, 483, 613, 624, 814
PspPI GGNCC 6 cut(s) 15, 171, 215, 482, 612, 789
PspPPI RGGWCCY 3 cut(s) 171, 482, 612
PsrI GAACNNNNNNTAC 2 cut(s) 873, 905
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 2 cut(s) 622, 1010
RsaI GTAC 3 cut(s) 518, 932, 989
RsaNI GTAC 3 cut(s) 517, 931, 988
Rsr2I CGGWCCG 1 cut(s) 215
RsrII CGGWCCG 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 855, 936
SatI GCNGC 2 cut(s) 885, 984
Sau3AI GATC 8 cut(s) 198, 303, 400, 456, 501, 594, 622, 1010
Sau96I GGNCC 6 cut(s) 15, 171, 215, 482, 612, 789
SchI GAGTC 2 cut(s) 475, 699
ScrFI CCNGG 3 cut(s) 169, 693, 719
SduI GDGCHC 1 cut(s) 997
SfaNI GCATC 2 cut(s) 641, 968
SinI GGWCC 6 cut(s) 15, 171, 215, 482, 612, 789
SmlI CTYRAG 1 cut(s) 943
SmoI CTYRAG 1 cut(s) 943
Sse9I AATT 3 cut(s) 193, 442, 598
SspMI CTAG 2 cut(s) 582, 759
StyD4I CCNGG 3 cut(s) 167, 691, 717
StyI CCWWGG 2 cut(s) 239, 666
TaaI ACNGT 3 cut(s) 394, 862, 970
TaqI TCGA 2 cut(s) 306, 831
TaqII GACCGA 1 cut(s) 358
TasI AATT 3 cut(s) 193, 442, 598
TauI GCSGC 1 cut(s) 887
Tru1I TTAA 2 cut(s) 855, 936
Tru9I TTAA 2 cut(s) 855, 936
TscAI CASTG 2 cut(s) 433, 975
TseFI GTSAC 3 cut(s) 372, 428, 557
TseI GCWGC 1 cut(s) 983
Tsp45I GTSAC 3 cut(s) 372, 428, 557
TspDTI ATGAA 3 cut(s) 303, 525, 605
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 2 cut(s) 433, 975
Van91I CCANNNNNTGG 1 cut(s) 908
VpaK11BI GGWCC 6 cut(s) 15, 171, 215, 482, 612, 789
XspI CTAG 2 cut(s) 582, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.